3Q20A

Crystal structure of rbcx c103a mutant from thermosynechococcus elongatus
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
114
structure length
114
Chain Sequence
MDVKHIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVREHLAEMVADYLPEMLRAGIQQANLQQRAQQLERMTQVSE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-33)AH3 (53-63)TIV1 (48-51)AH2 (35-48)AH4 (65-83)EMPTYAH5 (85-112)Updating...
connected with : NaN
molecule tags Chaperone
source organism Thermosynechococcus elongatus
publication title Structure of the RuBisCO chaperone RbcX from the thermophilic cyanobacterium Thermosynechococcus elongatus
pubmed doi rcsb
molecule keywords RbcX protein
total genus 49
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3q20A00
2PEIA 2PEMA 5BS2A 4GR2A 4GR6A 2Z46A 2Z45A 2PY8A 2PEKA 2PENA 2PEQA 2PEOA 2Z44A 3Q20A 2PEJA 3RG6C 3HYBA 5BS1A
chains in the Genus database with same CATH superfamily
3CCVP 1A8OA 2N5IA 1Q86Q 3G4SP 4U0CA 4UHPB 1VQKP 2MVVA 2N6YA 1ACPA 2KG8A 3RG2A 2KGEA 1EMVA 3VRLC 3M1MA 1VQ9P 3CXCO 2PEJA 3CC4P 2XT1A 2K0XA 2OARA 3U43A 2N5HA 3RG6C 1VKUA 1M6NA 1HQBA 1K30A 5HGOA 4GR2A 3GZMA 2VLQA 1KQSO 4U0BA 3G21A 3G1GA 2OTJP 2WPTA 3EJEA 2Z45A 1DNYA 2EIAA 3MGEA 5KP8B 2K93A 5BS2A 1BAJA 3DS5A 3I56P 1YIJP 1K9MQ 3DPHA 2GZIA 2MF4A 2L22A 2KG9A 4XFXA 2PENA 4DG9A 3B4QA 2MR7A 4PH1A 1M1KQ 5CZDB 1GPJA 2XXMA 2EHTA 5HVCA 1YJ9P 1VQLP 2FQ0A 4GR6A 2VLNA 2CWOA 1VQPP 2GDXA 2L0QA 3H4EA 2JQ4A 2LL8A 3HZQA 2K2QA 3G6EP 2K92A 4F37A 5F2OA 2MVUA 2LTEA 3GZLA 5KP7B 2L4BA 2AVAA 1YJWP 2PNGA 2NO8A 1UNKA 2GZEA 1MZ8A 3OW2O 1IUQA 1VQ4P 1VQOP 3CCLP 2AFEA 2JO0A 3CCJP 2VSQA 1M74A 1DV5A 3DS2A 3DS0A 1GXGA 1KLPA 2KORA 3DS1A 1UJZA 3GJNA 1X3OA 2JU1A 1EOQA 2CGQA 4BPFA 2K5XA 1F80D 3GKLC 4H2YC 4QKOA 2BHVA 2Z44A 4U0FA 1AYIA 2KWLA 2PEOA 1Q7YQ 2K94A 3H47A 2Z46A 2KGCA 2QNWA 4CA3A 1VQ5P 1AF8A 2BUOA 3CCSP 1K73Q 1A43A 2E1MA 2GZJA 2X2BA 1YI2P 2FADA 2EG5A 2KOQA 3CCQP 2P9XA 2XZ0D 5KP6B 4COCA 1N8RQ 1NQ4A 1W2BO 2JAZA 2AF8A 2LMLA 1KD1Q 1Q81Q 2M5RA 1GXHA 2GDWA 3Q20A 3DTJA 2OTLP 4PXHB 1VQMP 2LF4A 3G0VA 1E6JP 1T8KA 2GYKA 2FVAA 3H0DA 3DS4A 1RO2A 5I4TG 4QNBA 2MD9A 4COPA 4H2WC 3G71P 3CCMP 2PEKA 4H2XC 2JGPA 5F2KA 1S72P 1IMQA 2FACA 2KOPA 3DS3A 4IPYA 3CCEP 2VLOA 5HGNA 4NEOA 1D1DA 4PWVB 1L0IA 2FQ2A 2EHSA 2PEQA 4U0AA 3EJDA 4XFZA 2MR8A 2LIUA 2AFDA 3CCRP 2N50A 2CNRA 2N6ZA 1VHNA 3CC2P 1M6EX 2DNWA 4HKGA 1EIAA 3B5IA 4PH0A 2EFJA 2LIWA 2FQ1A 3CPWO 2XZ1C 2KOSA 1YJNP 1QVFO 3CCUP 1FR2A 2FAEA 5EW5E 2KW2A 3I55P 1YITP 4BPGA 2GDYA 1IMPA 2M8PA 5HV8A 2ROQA 3WBHA 2M8NA 1QVGO 1YHQP 1Q82Q 2GZFA 2N98A 1QRJA 4MRTC 3NY7B 2GZGA 1VQ6P 2M8LA 1K8AQ 2KR5A 2JB0A 1HY8A 2FVEA 3G26A 4XRQA 2DGYA 2JU2A 3CMAP 1ZMBA 1NJIQ 1M90Q 3E2DA 1VQNP 1OR5A 2L9FA 4WYMA 2VLPA 2KG6A 1RNIA 1VQ7P 2KODA 2MY5A 5JPAA 2CQ8A 3CMEP 2JYGA 2PEIA 3G29A 1BXIA 3EJBA 3P05A 4M0IA 1L0HA 3G28A 4IZ6A 3NTEA 5HGLA 1VQ8P 2KGDA 2XV6A 2ERHA 3LRYA 2LKIA 5F2NA 2JYLA 4BPHA 5HGMA 1Z6MA 4XFYA 3CC7P 5EJDA 2L6EA 2ONTA 4R0MA 3CE7A 2KGAA 1RO0A 3LMOA 2LPKA 2CG5B 7CEIA 2QEXP 2QA4P 3CD6P 2K0DX 2PEMA 2PY8A 2FHSC 2K0YA 1JJ2O 2LOLA 1AUMA 5BS1A 4U0EA 2KOOA 1E0HA 1KC8Q 3G1IA 1CEIA 2FVFA 4U0DA 4XROA 1ZNVA 2JBGA 5DCKA 3HYBA
chains in the Genus database with same CATH topology
1E6JP 3H0DA 3H4EA 3CCVP 1QVGO 1YHQP 3HZQA 1Q82Q 3G6EP 3DS4A 1A8OA 1RO2A 1QRJA 1Q86Q 3G4SP 4U0CA 5F2OA 5I4TG 4QNBA 1VQKP 4COPA 3CCMP 3G71P 1VQ6P 3VRLC 2PEKA 3M1MA 1VQ9P 2M8LA 3CXCO 1K8AQ 1YJWP 2PEJA 5F2KA 3CC4P 2XT1A 3G26A 4XRQA 1S72P 2DGYA 3CMAP 2OARA 1ZMBA 1NJIQ 3RG6C 1M90Q 3E2DA 1M6NA 3DS3A 3OW2O 4IPYA 1VQNP 1IUQA 1K30A 1VQOP 1VQ4P 3CCEP 3CCLP 4WYMA 2JO0A 5HGOA 1RNIA 4GR2A 3CCJP 1M74A 1KQSO 1VQ7P 5HGNA 2KODA 4U0BA 3DS2A 5JPAA 1D1DA 3CMEP 2JYGA 2PEIA 3G21A 3G29A 3DS0A 3G1GA 3P05A 4M0IA 3G28A 2PEQA 3NTEA 4U0AA 5HGLA 1VQ8P 2OTJP 2XV6A 4XFZA 3DS1A 3LRYA 5F2NA 2JYLA 2Z45A 5HGMA 1EOQA 2EIAA 3MGEA 4XFYA 3CCRP 5BS2A 1BAJA 3DS5A 2L6EA 2ONTA 3CC7P 2BHVA 2Z44A 4U0FA 1RO0A 3CC2P 1M6EX 3I56P 1YIJP 1K9MQ 3DPHA 1EIAA 2PEOA 2QEXP 1Q7YQ 2QA4P 3H47A 2Z46A 3CD6P 3B5IA 4XFXA 2PENA 4PH0A 1VQ5P 2BUOA 3CCSP 1K73Q 1A43A 2E1MA 2PEMA 4PH1A 2EFJA 1YI2P 2EG5A 2PY8A 3CPWO 1M1KQ 3CCQP 1YJNP 1QVFO 1JJ2O 2P9XA 2XXMA 3CCUP 4COCA 1AUMA 1N8RQ 1VQLP 1YJ9P 1W2BO 5BS1A 4GR6A 1KD1Q 4U0EA 1Q81Q 1KC8Q 3I55P 2CWOA 3G1IA 1YITP 3Q20A 3DTJA 1VQPP 4U0DA 2M8PA 4XROA 2OTLP 1VQMP 2LF4A 3WBHA 5DCKA 2M8NA 3HYBA 3G0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEI A;  2PEM A;  5BS2 A;  4GR2 A;  4GR6 A;  2Z46 A;  2Z45 A;  2PY8 A;  2PEK A;  2PEN A;  2PEQ A;  2PEO A;  2Z44 A;  3Q20 A;  2PEJ A;  3RG6 C;  3HYB A;  5BS1 A; 
#chains in the Genus database with same CATH topology
 3CCV P;  1A8O A;  2N5I A;  1Q86 Q;  3G4S P;  4U0C A;  4UHP B;  1VQK P;  2MVV A;  2N6Y A;  1ACP A;  2KG8 A;  3RG2 A;  2KGE A;  1EMV A;  3VRL C;  3M1M A;  1VQ9 P;  3CXC O;  2PEJ A;  3CC4 P;  2XT1 A;  2K0X A;  2OAR A;  3U43 A;  2N5H A;  3RG6 C;  1VKU A;  1M6N A;  1HQB A;  1K30 A;  5HGO A;  4GR2 A;  3GZM A;  2VLQ A;  1KQS O;  4U0B A;  3G21 A;  3G1G A;  2OTJ P;  2WPT A;  3EJE A;  2Z45 A;  1DNY A;  2EIA A;  3MGE A;  5KP8 B;  2K93 A;  5BS2 A;  1BAJ A;  3DS5 A;  3I56 P;  1YIJ P;  1K9M Q;  3DPH A;  2GZI A;  2MF4 A;  2L22 A;  2KG9 A;  4XFX A;  2PEN A;  4DG9 A;  3B4Q A;  2MR7 A;  4PH1 A;  1M1K Q;  5CZD B;  1GPJ A;  2XXM A;  2EHT A;  5HVC A;  1YJ9 P;  1VQL P;  2FQ0 A;  4GR6 A;  2VLN A;  2CWO A;  1VQP P;  2GDX A;  2L0Q A;  3H4E A;  2JQ4 A;  2LL8 A;  3HZQ A;  2K2Q A;  3G6E P;  2K92 A;  4F37 A;  5F2O A;  2MVU A;  2LTE A;  3GZL A;  5KP7 B;  2L4B A;  2AVA A;  1YJW P;  2PNG A;  2NO8 A;  1UNK A;  2GZE A;  1MZ8 A;  3OW2 O;  1IUQ A;  1VQ4 P;  1VQO P;  3CCL P;  2AFE A;  2JO0 A;  3CCJ P;  2VSQ A;  1M74 A;  1DV5 A;  3DS2 A;  3DS0 A;  1GXG A;  1KLP A;  2KOR A;  3DS1 A;  1UJZ A;  3GJN A;  1X3O A;  2JU1 A;  1EOQ A;  2CGQ A;  4BPF A;  2K5X A;  1F80 D;  3GKL C;  4H2Y C;  4QKO A;  2BHV A;  2Z44 A;  4U0F A;  1AYI A;  2KWL A;  2PEO A;  1Q7Y Q;  2K94 A;  3H47 A;  2Z46 A;  2KGC A;  2QNW A;  4CA3 A;  1VQ5 P;  1AF8 A;  2BUO A;  3CCS P;  1K73 Q;  1A43 A;  2E1M A;  2GZJ A;  2X2B A;  1YI2 P;  2FAD A;  2EG5 A;  2KOQ A;  3CCQ P;  2P9X A;  2XZ0 D;  5KP6 B;  4COC A;  1N8R Q;  1NQ4 A;  1W2B O;  2JAZ A;  2AF8 A;  2LML A;  1KD1 Q;  1Q81 Q;  2M5R A;  1GXH A;  2GDW A;  3Q20 A;  3DTJ A;  2OTL P;  4PXH B;  1VQM P;  2LF4 A;  3G0V A;  1E6J P;  1T8K A;  2GYK A;  2FVA A;  3H0D A;  3DS4 A;  1RO2 A;  5I4T G;  4QNB A;  2MD9 A;  4COP A;  4H2W C;  3G71 P;  3CCM P;  2PEK A;  4H2X C;  2JGP A;  5F2K A;  1S72 P;  1IMQ A;  2FAC A;  2KOP A;  3DS3 A;  4IPY A;  3CCE P;  2VLO A;  5HGN A;  4NEO A;  1D1D A;  4PWV B;  1L0I A;  2FQ2 A;  2EHS A;  2PEQ A;  4U0A A;  3EJD A;  4XFZ A;  2MR8 A;  2LIU A;  2AFD A;  3CCR P;  2N50 A;  2CNR A;  2N6Z A;  1VHN A;  3CC2 P;  1M6E X;  2DNW A;  4HKG A;  1EIA A;  3B5I A;  4PH0 A;  2EFJ A;  2LIW A;  2FQ1 A;  3CPW O;  2XZ1 C;  2KOS A;  1YJN P;  1QVF O;  3CCU P;  1FR2 A;  2FAE A;  5EW5 E;  2KW2 A;  3I55 P;  1YIT P;  4BPG A;  2GDY A;  1IMP A;  2M8P A;  5HV8 A;  2ROQ A;  3WBH A;  2M8N A;  1QVG O;  1YHQ P;  1Q82 Q;  2GZF A;  2N98 A;  1QRJ A;  4MRT C;  3NY7 B;  2GZG A;  1VQ6 P;  2M8L A;  1K8A Q;  2KR5 A;  2JB0 A;  1HY8 A;  2FVE A;  3G26 A;  4XRQ A;  2DGY A;  2JU2 A;  3CMA P;  1ZMB A;  1NJI Q;  1M90 Q;  3E2D A;  1VQN P;  1OR5 A;  2L9F A;  4WYM A;  2VLP A;  2KG6 A;  1RNI A;  1VQ7 P;  2KOD A;  2MY5 A;  5JPA A;  2CQ8 A;  3CME P;  2JYG A;  2PEI A;  3G29 A;  1BXI A;  3EJB A;  3P05 A;  4M0I A;  1L0H A;  3G28 A;  4IZ6 A;  3NTE A;  5HGL A;  1VQ8 P;  2KGD A;  2XV6 A;  2ERH A;  3LRY A;  2LKI A;  5F2N A;  2JYL A;  4BPH A;  5HGM A;  1Z6M A;  4XFY A;  3CC7 P;  5EJD A;  2L6E A;  2ONT A;  4R0M A;  3CE7 A;  2KGA A;  1RO0 A;  3LMO A;  2LPK A;  2CG5 B;  7CEI A;  2QEX P;  2QA4 P;  3CD6 P;  2K0D X;  2PEM A;  2PY8 A;  2FHS C;  2K0Y A;  1JJ2 O;  2LOL A;  1AUM A;  5BS1 A;  4U0E A;  2KOO A;  1E0H A;  1KC8 Q;  3G1I A;  1CEI A;  2FVF A;  4U0D A;  4XRO A;  1ZNV A;  2JBG A;  5DCK A;  3HYB A; 
#chains in the Genus database with same CATH homology
 1E6J P;  3H0D A;  3H4E A;  3CCV P;  1QVG O;  1YHQ P;  3HZQ A;  1Q82 Q;  3G6E P;  3DS4 A;  1A8O A;  1RO2 A;  1QRJ A;  1Q86 Q;  3G4S P;  4U0C A;  5F2O A;  5I4T G;  4QNB A;  1VQK P;  4COP A;  3CCM P;  3G71 P;  1VQ6 P;  3VRL C;  2PEK A;  3M1M A;  1VQ9 P;  2M8L A;  3CXC O;  1K8A Q;  1YJW P;  2PEJ A;  5F2K A;  3CC4 P;  2XT1 A;  3G26 A;  4XRQ A;  1S72 P;  2DGY A;  3CMA P;  2OAR A;  1ZMB A;  1NJI Q;  3RG6 C;  1M90 Q;  3E2D A;  1M6N A;  3DS3 A;  3OW2 O;  4IPY A;  1VQN P;  1IUQ A;  1K30 A;  1VQO P;  1VQ4 P;  3CCE P;  3CCL P;  4WYM A;  2JO0 A;  5HGO A;  1RNI A;  4GR2 A;  3CCJ P;  1M74 A;  1KQS O;  1VQ7 P;  5HGN A;  2KOD A;  4U0B A;  3DS2 A;  5JPA A;  1D1D A;  3CME P;  2JYG A;  2PEI A;  3G21 A;  3G29 A;  3DS0 A;  3G1G A;  3P05 A;  4M0I A;  3G28 A;  2PEQ A;  3NTE A;  4U0A A;  5HGL A;  1VQ8 P;  2OTJ P;  2XV6 A;  4XFZ A;  3DS1 A;  3LRY A;  5F2N A;  2JYL A;  2Z45 A;  5HGM A;  1EOQ A;  2EIA A;  3MGE A;  4XFY A;  3CCR P;  5BS2 A;  1BAJ A;  3DS5 A;  2L6E A;  2ONT A;  3CC7 P;  2BHV A;  2Z44 A;  4U0F A;  1RO0 A;  3CC2 P;  1M6E X;  3I56 P;  1YIJ P;  1K9M Q;  3DPH A;  1EIA A;  2PEO A;  2QEX P;  1Q7Y Q;  2QA4 P;  3H47 A;  2Z46 A;  3CD6 P;  3B5I A;  4XFX A;  2PEN A;  4PH0 A;  1VQ5 P;  2BUO A;  3CCS P;  1K73 Q;  1A43 A;  2E1M A;  2PEM A;  4PH1 A;  2EFJ A;  1YI2 P;  2EG5 A;  2PY8 A;  3CPW O;  1M1K Q;  3CCQ P;  1YJN P;  1QVF O;  1JJ2 O;  2P9X A;  2XXM A;  3CCU P;  4COC A;  1AUM A;  1N8R Q;  1VQL P;  1YJ9 P;  1W2B O;  5BS1 A;  4GR6 A;  1KD1 Q;  4U0E A;  1Q81 Q;  1KC8 Q;  3I55 P;  2CWO A;  3G1I A;  1YIT P;  3Q20 A;  3DTJ A;  1VQP P;  4U0D A;  2M8P A;  4XRO A;  2OTL P;  1VQM P;  2LF4 A;  3WBH A;  5DCK A;  2M8N A;  3HYB A;  3G0V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.