4BPGA

Crystal structure of bacillus subtilis dltc
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
79
Chain Sequence
MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELKRS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-15)AH3 (37-50)TVIII1 (32-35)AH2 (18-22)EMPTYTI1 (23-26)AH4 (67-78)3H1 (28-31)TI3 (61-64)TIV1 (62-65)3H2 (56-58)TI2 (60-63)Updating...
connected with : NaN
molecule tags Ligase
source organism Bacillus subtilis
publication title High-Resolution Structures of the D-Alanyl Carrier Protein (Dcp) Dltc from Bacillus Subtilis Reveal Equivalent Conformations of Apo- and Holo-Forms
pubmed doi rcsb
molecule keywords D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 2
total genus 24
structure length 79
sequence length 80
chains with identical sequence B
ec nomenclature ec 6.1.1.13: D-alanine--poly(phosphoribitol) ligase.
pdb deposition date 2013-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4bpgA00
3EJDA 2LIUA 2KOOA 2FADA 2KWLA 2K0XA 2FQ0A 4CA3A 2CQ8A 2FVAA 2CNRA 4PXHB 2L22A 2KOQA 4NEOA 2AVAA 2ROQA 3EJBA 2L9FA 2AF8A 2GDWA 2FVFA 1F80D 2JU2A 5KP6B 2K92A 3RG2A 2LPKA 2MD9A 4H2YC 1AF8A 2KGDA 2LKIA 2LOLA 2VSQA 2FVEA 2JGPA 2CGQA 2N50A 4H2XC 1NQ4A 4HKGA 2MY5A 5EJDA 1HY8A 3EJEA 2KR5A 2FHSC 2M5RA 4DG9A 2N6ZA 4BPFA 2KOSA 1OR5A 2KG9A 2KGEA 2EHTA 2L0QA 1X3OA 4R0MA 3GZMA 2N5IA 1DNYA 1T8KA 1L0IA 2KGCA 2K93A 2QNWA 2MVUA 2JU1A 1L0HA 3CE7A 2PNGA 1HQBA 2AFDA 2AFEA 2XZ1C 3NY7B 1DV5A 2KORA 2N98A 2LL8A 2FACA 2MVVA 2GDYA 2KG8A 4BPHA 2MR7A 4PWVB 2LIWA 4H2WC 5CZDB 2CG5B 2X2BA 2XZ0D 4MRTC 2N6YA 2FQ2A 2LTEA 2K94A 2KGAA 2K0YA 2JQ4A 2EHSA 2K2QA 2GDXA 1ACPA 1VKUA 4IZ6A 2LMLA 2N5HA 2KG6A 2KOPA 3GZLA 2L4BA 5KP8B 5HV8A 2FQ1A 4BPGA 3LMOA 2FAEA 2DNWA 5HVCA 5KP7B 1KLPA 2MR8A 2KW2A 2MF4A
chains in the Genus database with same CATH superfamily
3EJDA 2LIUA 1JJ2O 3G29A 1AYIA 1IUQA 2FVAA 1M90Q 3MGEA 2KOQA 4NEOA 3CCVP 2PY8A 5F2OA 2M8PA 2K92A 3Q20A 3HZQA 4U0FA 4H2YC 5HGNA 2EFJA 1KD1Q 2FVEA 2JGPA 1EMVA 1HY8A 2XT1A 3EJEA 1E0HA 2FHSC 4DG9A 3G21A 3HYBA 4BPFA 1OR5A 2KG9A 3CCMP 2KGEA 2JB0A 1X3OA 2JO0A 3GZMA 3OW2O 1L0IA 1YJ9P 2JU1A 1L0HA 2EG5A 3NY7B 1RO2A 2LL8A 2FACA 2KG8A 3CC2P 2MR7A 4PWVB 2PEQA 3DS1A 1M1KQ 4H2WC 1Q7YQ 2N6YA 3G26A 2K94A 3CCEP 1VKUA 3E2DA 1VQLP 1VQ7P 3I56P 1Q86Q 2EIAA 3DS0A 4U0AA 5KP8B 5HV8A 4GR2A 2JYLA 3WBHA 2VLPA 1EOQA 1M74A 1Q82Q 2Z45A 1VQ4P 2FAEA 3DS5A 3U43A 2JYGA 2KW2A 1BXIA 1YJWP 2FQ0A 4CA3A 2GZJA 2QA4P 2PENA 2ROQA 2GZFA 2L9FA 2GDWA 2FVFA 4U0EA 1KC8Q 3RG2A 1VQOP 3CMAP 1YHQP 2M8NA 1AF8A 2VLQA 3CCUP 2Z44A 3M1MA 1M6EX 2CGQA 1K73Q 1A8OA 2DGYA 3DPHA 2MY5A 1KQSO 5EJDA 3NTEA 2KR5A 2N6ZA 2KOSA 1IMQA 1IMPA 3GJNA 2EHTA 1CEIA 1DNYA 2K93A 2KGCA 2MVUA 1GXHA 4QNBA 2PNGA 4PH0A 2AFDA 1K8AQ 1YJNP 1W2BO 3GKLC 1Q81Q 3CCJP 3DTJA 5F2KA 2GDYA 3B5IA 4BPHA 1VQ8P 2LIWA 1VQ5P 2X2BA 2OARA 3G0VA 4MRTC 1ZMBA 4UHPB 2K0YA 2JQ4A 1ACPA 1GPJA 2K5XA 2GZIA 1M6NA 5HVCA 4U0BA 3G1IA 4XROA 3DS4A 2KOOA 2FADA 2KWLA 2K0XA 5I4TG 2PEIA 2CQ8A 2GYKA 4QKOA 4XRQA 3CCLP 1A43A 4PXHB 1AUMA 2Z46A 3G28A 2CWOA 1RNIA 1YIJP 3G71P 1F80D 2JU2A 5KP6B 4PH1A 2E1MA 1BAJA 5BS1A 2JBGA 2GZGA 1NJIQ 2KGDA 2GZEA 3DS3A 4HKGA 3G1GA 1QRJA 1VQPP 2PEMA 1QVGO 5HGMA 2N5IA 3CE7A 3RG6C 4U0CA 3CCSP 1S72P 3I55P 1VQMP 1MZ8A 4COPA 5JPAA 1ZNVA 2NO8A 2N98A 3B4QA 4XFXA 3CCQP 4WYMA 2ERHA 4IPYA 2PEOA 2VLNA 1VQKP 3H0DA 5CZDB 2CG5B 5HGLA 2BUOA 3CCRP 3DS2A 3LRYA 4COCA 2EHSA 2K2QA 2GDXA 2BHVA 1D1DA 1VHNA 2LMLA 2N5HA 2KG6A 2KOPA 1YI2P 5EW5E 2FQ1A 2ONTA 3LMOA 1E6JP 1UJZA 3H47A 5KP7B 1Z6MA 4F37A 1KLPA 2MR8A 3H4EA 2MF4A 1VQ6P 2L6EA 2P9XA 2OTLP 2QEXP 2CNRA 2L22A 2PEJA 2AVAA 3EJBA 5BS2A 2AF8A 3CXCO 3VRLC 2LPKA 2MD9A 5F2NA 2WPTA 1FR2A 2LKIA 2LOLA 2VSQA 3CC7P 1EIAA 2N50A 2LF4A 1NQ4A 4H2XC 4M0IA 2M5RA 5HGOA 2XV6A 2JAZA 2VLOA 1QVFO 2L0QA 4R0MA 2KODA 1K9MQ 3CC4P 1T8KA 2K0DX 4XFZA 3G6EP 2QNWA 1VQNP 4U0DA 1HQBA 3P05A 2AFEA 2XZ1C 1UNKA 3CPWO 1DV5A 2KORA 3G4SP 1YITP 2PEKA 1RO0A 1GXGA 2MVVA 4XFYA 2XZ0D 2XXMA 2OTJP 4GR6A 7CEIA 2FQ2A 2LTEA 2KGAA 3CD6P 1N8RQ 1K30A 4IZ6A 3CMEP 3GZLA 2L4BA 4BPGA 2DNWA 1VQ9P 2M8LA 5DCKA
chains in the Genus database with same CATH topology
3EJDA 2LIUA 2KOOA 2FADA 2KWLA 2K0XA 2FQ0A 4CA3A 2CQ8A 2FVAA 2CNRA 4PXHB 2L22A 2KOQA 4NEOA 2AVAA 2ROQA 3EJBA 2L9FA 2AF8A 2GDWA 2FVFA 1F80D 2JU2A 5KP6B 2K92A 3RG2A 2LPKA 2MD9A 4H2YC 1AF8A 2KGDA 2LKIA 2LOLA 2VSQA 2FVEA 2JGPA 2CGQA 2N50A 4H2XC 1NQ4A 4HKGA 2MY5A 5EJDA 1HY8A 3EJEA 2KR5A 2FHSC 2M5RA 4DG9A 2N6ZA 4BPFA 2KOSA 1OR5A 2KG9A 2KGEA 2EHTA 2L0QA 1X3OA 4R0MA 3GZMA 2N5IA 1DNYA 1T8KA 1L0IA 2KGCA 2K93A 2QNWA 2MVUA 2JU1A 1L0HA 3CE7A 2PNGA 1HQBA 2AFDA 2AFEA 2XZ1C 3NY7B 1DV5A 2KORA 2N98A 2LL8A 2FACA 2MVVA 2GDYA 2KG8A 4BPHA 2MR7A 4PWVB 2LIWA 4H2WC 5CZDB 2CG5B 2X2BA 2XZ0D 4MRTC 2N6YA 2FQ2A 2LTEA 2K94A 2KGAA 2K0YA 2JQ4A 2EHSA 2K2QA 2GDXA 1ACPA 1VKUA 4IZ6A 2LMLA 2N5HA 2KG6A 2KOPA 3GZLA 2L4BA 5KP8B 5HV8A 2FQ1A 4BPGA 3LMOA 2FAEA 2DNWA 5HVCA 5KP7B 1KLPA 2MR8A 2KW2A 2MF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EJD A;  2LIU A;  2KOO A;  2FAD A;  2KWL A;  2K0X A;  2FQ0 A;  4CA3 A;  2CQ8 A;  2FVA A;  2CNR A;  4PXH B;  2L22 A;  2KOQ A;  4NEO A;  2AVA A;  2ROQ A;  3EJB A;  2L9F A;  2AF8 A;  2GDW A;  2FVF A;  1F80 D;  2JU2 A;  5KP6 B;  2K92 A;  3RG2 A;  2LPK A;  2MD9 A;  4H2Y C;  1AF8 A;  2KGD A;  2LKI A;  2LOL A;  2VSQ A;  2FVE A;  2JGP A;  2CGQ A;  2N50 A;  4H2X C;  1NQ4 A;  4HKG A;  2MY5 A;  5EJD A;  1HY8 A;  3EJE A;  2KR5 A;  2FHS C;  2M5R A;  4DG9 A;  2N6Z A;  4BPF A;  2KOS A;  1OR5 A;  2KG9 A;  2KGE A;  2EHT A;  2L0Q A;  1X3O A;  4R0M A;  3GZM A;  2N5I A;  1DNY A;  1T8K A;  1L0I A;  2KGC A;  2K93 A;  2QNW A;  2MVU A;  2JU1 A;  1L0H A;  3CE7 A;  2PNG A;  1HQB A;  2AFD A;  2AFE A;  2XZ1 C;  3NY7 B;  1DV5 A;  2KOR A;  2N98 A;  2LL8 A;  2FAC A;  2MVV A;  2GDY A;  2KG8 A;  4BPH A;  2MR7 A;  4PWV B;  2LIW A;  4H2W C;  5CZD B;  2CG5 B;  2X2B A;  2XZ0 D;  4MRT C;  2N6Y A;  2FQ2 A;  2LTE A;  2K94 A;  2KGA A;  2K0Y A;  2JQ4 A;  2EHS A;  2K2Q A;  2GDX A;  1ACP A;  1VKU A;  4IZ6 A;  2LML A;  2N5H A;  2KG6 A;  2KOP A;  3GZL A;  2L4B A;  5KP8 B;  5HV8 A;  2FQ1 A;  4BPG A;  3LMO A;  2FAE A;  2DNW A;  5HVC A;  5KP7 B;  1KLP A;  2MR8 A;  2KW2 A;  2MF4 A; 
#chains in the Genus database with same CATH topology
 3EJD A;  2LIU A;  1JJ2 O;  3G29 A;  1AYI A;  1IUQ A;  2FVA A;  1M90 Q;  3MGE A;  2KOQ A;  4NEO A;  3CCV P;  2PY8 A;  5F2O A;  2M8P A;  2K92 A;  3Q20 A;  3HZQ A;  4U0F A;  4H2Y C;  5HGN A;  2EFJ A;  1KD1 Q;  2FVE A;  2JGP A;  1EMV A;  1HY8 A;  2XT1 A;  3EJE A;  1E0H A;  2FHS C;  4DG9 A;  3G21 A;  3HYB A;  4BPF A;  1OR5 A;  2KG9 A;  3CCM P;  2KGE A;  2JB0 A;  1X3O A;  2JO0 A;  3GZM A;  3OW2 O;  1L0I A;  1YJ9 P;  2JU1 A;  1L0H A;  2EG5 A;  3NY7 B;  1RO2 A;  2LL8 A;  2FAC A;  2KG8 A;  3CC2 P;  2MR7 A;  4PWV B;  2PEQ A;  3DS1 A;  1M1K Q;  4H2W C;  1Q7Y Q;  2N6Y A;  3G26 A;  2K94 A;  3CCE P;  1VKU A;  3E2D A;  1VQL P;  1VQ7 P;  3I56 P;  1Q86 Q;  2EIA A;  3DS0 A;  4U0A A;  5KP8 B;  5HV8 A;  4GR2 A;  2JYL A;  3WBH A;  2VLP A;  1EOQ A;  1M74 A;  1Q82 Q;  2Z45 A;  1VQ4 P;  2FAE A;  3DS5 A;  3U43 A;  2JYG A;  2KW2 A;  1BXI A;  1YJW P;  2FQ0 A;  4CA3 A;  2GZJ A;  2QA4 P;  2PEN A;  2ROQ A;  2GZF A;  2L9F A;  2GDW A;  2FVF A;  4U0E A;  1KC8 Q;  3RG2 A;  1VQO P;  3CMA P;  1YHQ P;  2M8N A;  1AF8 A;  2VLQ A;  3CCU P;  2Z44 A;  3M1M A;  1M6E X;  2CGQ A;  1K73 Q;  1A8O A;  2DGY A;  3DPH A;  2MY5 A;  1KQS O;  5EJD A;  3NTE A;  2KR5 A;  2N6Z A;  2KOS A;  1IMQ A;  1IMP A;  3GJN A;  2EHT A;  1CEI A;  1DNY A;  2K93 A;  2KGC A;  2MVU A;  1GXH A;  4QNB A;  2PNG A;  4PH0 A;  2AFD A;  1K8A Q;  1YJN P;  1W2B O;  3GKL C;  1Q81 Q;  3CCJ P;  3DTJ A;  5F2K A;  2GDY A;  3B5I A;  4BPH A;  1VQ8 P;  2LIW A;  1VQ5 P;  2X2B A;  2OAR A;  3G0V A;  4MRT C;  1ZMB A;  4UHP B;  2K0Y A;  2JQ4 A;  1ACP A;  1GPJ A;  2K5X A;  2GZI A;  1M6N A;  5HVC A;  4U0B A;  3G1I A;  4XRO A;  3DS4 A;  2KOO A;  2FAD A;  2KWL A;  2K0X A;  5I4T G;  2PEI A;  2CQ8 A;  2GYK A;  4QKO A;  4XRQ A;  3CCL P;  1A43 A;  4PXH B;  1AUM A;  2Z46 A;  3G28 A;  2CWO A;  1RNI A;  1YIJ P;  3G71 P;  1F80 D;  2JU2 A;  5KP6 B;  4PH1 A;  2E1M A;  1BAJ A;  5BS1 A;  2JBG A;  2GZG A;  1NJI Q;  2KGD A;  2GZE A;  3DS3 A;  4HKG A;  3G1G A;  1QRJ A;  1VQP P;  2PEM A;  1QVG O;  5HGM A;  2N5I A;  3CE7 A;  3RG6 C;  4U0C A;  3CCS P;  1S72 P;  3I55 P;  1VQM P;  1MZ8 A;  4COP A;  5JPA A;  1ZNV A;  2NO8 A;  2N98 A;  3B4Q A;  4XFX A;  3CCQ P;  4WYM A;  2ERH A;  4IPY A;  2PEO A;  2VLN A;  1VQK P;  3H0D A;  5CZD B;  2CG5 B;  5HGL A;  2BUO A;  3CCR P;  3DS2 A;  3LRY A;  4COC A;  2EHS A;  2K2Q A;  2GDX A;  2BHV A;  1D1D A;  1VHN A;  2LML A;  2N5H A;  2KG6 A;  2KOP A;  1YI2 P;  5EW5 E;  2FQ1 A;  2ONT A;  3LMO A;  1E6J P;  1UJZ A;  3H47 A;  5KP7 B;  1Z6M A;  4F37 A;  1KLP A;  2MR8 A;  3H4E A;  2MF4 A;  1VQ6 P;  2L6E A;  2P9X A;  2OTL P;  2QEX P;  2CNR A;  2L22 A;  2PEJ A;  2AVA A;  3EJB A;  5BS2 A;  2AF8 A;  3CXC O;  3VRL C;  2LPK A;  2MD9 A;  5F2N A;  2WPT A;  1FR2 A;  2LKI A;  2LOL A;  2VSQ A;  3CC7 P;  1EIA A;  2N50 A;  2LF4 A;  1NQ4 A;  4H2X C;  4M0I A;  2M5R A;  5HGO A;  2XV6 A;  2JAZ A;  2VLO A;  1QVF O;  2L0Q A;  4R0M A;  2KOD A;  1K9M Q;  3CC4 P;  1T8K A;  2K0D X;  4XFZ A;  3G6E P;  2QNW A;  1VQN P;  4U0D A;  1HQB A;  3P05 A;  2AFE A;  2XZ1 C;  1UNK A;  3CPW O;  1DV5 A;  2KOR A;  3G4S P;  1YIT P;  2PEK A;  1RO0 A;  1GXG A;  2MVV A;  4XFY A;  2XZ0 D;  2XXM A;  2OTJ P;  4GR6 A;  7CEI A;  2FQ2 A;  2LTE A;  2KGA A;  3CD6 P;  1N8R Q;  1K30 A;  4IZ6 A;  3CME P;  3GZL A;  2L4B A;  4BPG A;  2DNW A;  1VQ9 P;  2M8L A;  5DCK A; 
#chains in the Genus database with same CATH homology
 3EJD A;  2LIU A;  2KOO A;  2FAD A;  2KWL A;  2K0X A;  2FQ0 A;  4CA3 A;  2CQ8 A;  2FVA A;  2CNR A;  4PXH B;  2L22 A;  2KOQ A;  4NEO A;  2AVA A;  2ROQ A;  3EJB A;  2L9F A;  2AF8 A;  2GDW A;  2FVF A;  1F80 D;  2JU2 A;  5KP6 B;  2K92 A;  3RG2 A;  2LPK A;  2MD9 A;  4H2Y C;  1AF8 A;  2KGD A;  2LKI A;  2LOL A;  2VSQ A;  2FVE A;  2JGP A;  2CGQ A;  2N50 A;  4H2X C;  1NQ4 A;  4HKG A;  2MY5 A;  5EJD A;  1HY8 A;  3EJE A;  2KR5 A;  2FHS C;  2M5R A;  4DG9 A;  2N6Z A;  4BPF A;  2KOS A;  1OR5 A;  2KG9 A;  2KGE A;  2EHT A;  2L0Q A;  1X3O A;  4R0M A;  3GZM A;  2N5I A;  1DNY A;  1T8K A;  1L0I A;  2KGC A;  2K93 A;  2QNW A;  2MVU A;  2JU1 A;  1L0H A;  3CE7 A;  2PNG A;  1HQB A;  2AFD A;  2AFE A;  2XZ1 C;  3NY7 B;  1DV5 A;  2KOR A;  2N98 A;  2LL8 A;  2FAC A;  2MVV A;  2GDY A;  2KG8 A;  4BPH A;  2MR7 A;  4PWV B;  2LIW A;  4H2W C;  5CZD B;  2CG5 B;  2X2B A;  2XZ0 D;  4MRT C;  2N6Y A;  2FQ2 A;  2LTE A;  2K94 A;  2KGA A;  2K0Y A;  2JQ4 A;  2EHS A;  2K2Q A;  2GDX A;  1ACP A;  1VKU A;  4IZ6 A;  2LML A;  2N5H A;  2KG6 A;  2KOP A;  3GZL A;  2L4B A;  5KP8 B;  5HV8 A;  2FQ1 A;  4BPG A;  3LMO A;  2FAE A;  2DNW A;  5HVC A;  5KP7 B;  1KLP A;  2MR8 A;  2KW2 A;  2MF4 A; 
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