4H2Y | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	77
structure length	77
Chain Sequence	HMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligase
source organism	Bradyrhizobium japonicum
publication title	Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. pubmed doi rcsb
molecule keywords	Amino acid--[acyl-carrier-protein] ligase 1
total genus	21
structure length	77
sequence length	77
chains with identical sequence	D
ec nomenclature
pdb deposition date	2012-09-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00550	PP-binding	Phosphopantetheine attachment site

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.10	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	ACP-like	4h2yC00

1L0HA 2KWLA 4HKGA 3NY7B 3CE7A 2N5HA 4R0MA 2X2BA 2MR7A 2FVEA 2FQ1A 4PXHB 2N6ZA 4DG9A 2CG5B 3RG2A 2GDXA 1HQBA 2KGEA 4BPHA 2KOPA 1DNYA 5HV8A 4CA3A 2LOLA 2FQ2A 2KOOA 2MY5A 5CZDB 3EJEA 2QNWA 2KGDA 2N50A 2GDWA 2N5IA 2GDYA 2KR5A 2LKIA 2N98A 2MVUA 2ROQA 2N6YA 2MVVA 2FACA 1VKUA 4MRTC 2VSQA 2L9FA 2MR8A 2MF4A 1F80D 2K92A 5HVCA 1NQ4A 2LMLA 2XZ0D 1T8KA 2K0XA 3EJBA 2LTEA 4H2YC 2L4BA 2JGPA 2JU2A 2KORA 4PWVB 4H2WC 1HY8A 2K94A 2DNWA 2LL8A 4NEOA 1ACPA 2FQ0A 2FVAA 2PNGA 2K93A 3GZMA 2CGQA 1KLPA 2FAEA 2AFDA 2LIWA 4BPFA 2AVAA 1AF8A 2LIUA 4H2XC 2KG9A 2L22A 1L0IA 2JU1A 2EHSA 2EHTA 2KOQA 2FADA 3GZLA 2CQ8A 2FVFA 2KG6A 3EJDA 2KOSA 2XZ1C 5EJDA 1OR5A 2K2QA 2KGCA 1DV5A 2KW2A 2LPKA 2JQ4A 5KP6B 2M5RA 2FHSC 5KP7B 2MD9A 3LMOA 4BPGA 2AF8A 4IZ6A 2KG8A 2CNRA 5KP8B 2KGAA 2AFEA 2K0YA 2L0QA 1X3OA
chains in the Genus database with same CATH superfamily

2QA4P 3WBHA 2MR7A 1RO0A 2N6ZA 3CC2P 3RG2A 2PEQA 2EIAA 2Z46A 3HZQA 4CA3A 4M0IA 3G28A 3G0VA 1EIAA 3CCSP 2KGDA 2PEKA 1YI2P 4U0DA 2N5IA 1BXIA 2KR5A 3G1GA 1NJIQ 1E6JP 2L6EA 5DCKA 2MVVA 1Q82Q 1VKUA 1RO2A 4UHPB 2KODA 2MR8A 4IPYA 5EW5E 1F80D 2BHVA 2K92A 3U43A 1YJNP 2XZ0D 2LTEA 2Z44A 4PWVB 1HY8A 3CMAP 1QVFO 2K93A 1GXHA 1IMPA 2VLOA 3Q20A 3G71P 1VHNA 4QKOA 1QRJA 1AF8A 1UJZA 2KG9A 2VLQA 2EHSA 2EHTA 3CD6P 3CCMP 4U0CA 2KOSA 3G1IA 2PY8A 1KQSO 1S72P 3M1MA 5KP7B 1MZ8A 3GJNA 5F2NA 4IZ6A 2KG8A 1M6EX 1X3OA 1L0HA 3NY7B 1M90Q 3CE7A 2N5HA 3H0DA 1E0HA 1M1KQ 2NO8A 2FVEA 4PXHB 4DG9A 1VQ6P 2CG5B 1Q86Q 2XV6A 3CCVP 3GKLC 1HQBA 2KGEA 4BPHA 2FQ2A 4XFZA 3G6EP 4GR2A 1YITP 2WPTA 2GDYA 2LKIA 2N98A 2MVUA 2JYGA 5HGMA 4MRTC 2M8PA 2VSQA 3CCEP 2MF4A 5BS2A 2LMLA 1BAJA 1ZMBA 2GZIA 2GZGA 2GZFA 4H2YC 2L4BA 2JU2A 1W2BO 2LF4A 1KC8Q 1ACPA 3DPHA 1VQOP 1VQ7P 2FVAA 3CPWO 1KLPA 3G4SP 2FAEA 2K0DX 1YJ9P 2JBGA 4BPFA 2AVAA 2PEIA 3DS1A 4H2XC 2L22A 2VLPA 4F37A 1L0IA 1JJ2O 2FADA 3GZLA 3EJDA 1VQ8P 2XZ1C 2PEMA 2K2QA 2GZJA 1VQKP 4BPGA 2BUOA 3E2DA 3CCRP 2ONTA 5KP8B 3DTJA 2KGAA 2K0YA 5JPAA 3RG6C 4HKGA 5I4TG 5F2KA 3CC7P 1VQ4P 1KD1Q 2OARA 1DNYA 2K5XA 4QNBA 2P9XA 5CZDB 3EJEA 2QNWA 2PEOA 3H4EA 2N50A 5BS1A 2EG5A 2JB0A 3CCLP 1VQNP 1IUQA 3H47A 2ROQA 3CCJP 2N6YA 2FACA 1VQLP 5HGOA 4XRQA 2JYLA 1M74A 1M6NA 1VQPP 1NQ4A 4U0AA 3HYBA 1T8KA 2K0XA 2PENA 2JGPA 2KORA 4H2WC 2XXMA 1UNKA 5HGLA 2DNWA 4NEOA 4GR6A 2FQ0A 3OW2O 3GZMA 3I56P 4XFXA 2CGQA 3CCUP 2OTLP 1RNIA 1AYIA 1QVGO 3B5IA 2KOQA 2QEXP 2CQ8A 3P05A 2KG6A 2Z45A 4U0BA 3G26A 3CCQP 5HGNA 5EJDA 4WYMA 3CXCO 2LPKA 5KP6B 7CEIA 2FHSC 4U0FA 2MD9A 3LMOA 2AF8A 4PH1A 2CWOA 4XFYA 3MGEA 2EFJA 2KWLA 1Z6MA 3B4QA 4COPA 4R0MA 2X2BA 1IMQA 2FQ1A 1ZNVA 3DS4A 1FR2A 2GYKA 2GDXA 1AUMA 2KOPA 1K73Q 5HV8A 2LOLA 1Q81Q 2KOOA 3NTEA 2MY5A 1YHQP 1N8RQ 2GDWA 1Q7YQ 2E1MA 3VRLC 1EOQA 1VQMP 2L9FA 3CC4P 5HVCA 2DGYA 3DS5A 3EJBA 2XT1A 2ERHA 2GZEA 3I55P 3G29A 1K8AQ 1CEIA 2VLNA 4XROA 2K94A 1YIJP 2PEJA 2M8NA 2LL8A 2M8LA 2PNGA 1A43A 1K30A 3CMEP 3LRYA 3DS0A 1EMVA 4U0EA 2AFDA 2JO0A 1K9MQ 2LIWA 2LIUA 3DS3A 2JU1A 2OTJP 2FVFA 3DS2A 1GPJA 1GXGA 1VQ5P 1VQ9P 1OR5A 2KGCA 1DV5A 4COCA 2KW2A 1A8OA 2JQ4A 2M5RA 3G21A 1D1DA 1YJWP 2CNRA 4PH0A 2JAZA 2AFEA 2L0QA 5F2OA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1L0H A;  2KWL A;  4HKG A;  3NY7 B;  3CE7 A;  2N5H A;  4R0M A;  2X2B A;  2MR7 A;  2FVE A;  2FQ1 A;  4PXH B;  2N6Z A;  4DG9 A;  2CG5 B;  3RG2 A;  2GDX A;  1HQB A;  2KGE A;  4BPH A;  2KOP A;  1DNY A;  5HV8 A;  4CA3 A;  2LOL A;  2FQ2 A;  2KOO A;  2MY5 A;  5CZD B;  3EJE A;  2QNW A;  2KGD A;  2N50 A;  2GDW A;  2N5I A;  2GDY A;  2KR5 A;  2LKI A;  2N98 A;  2MVU A;  2ROQ A;  2N6Y A;  2MVV A;  2FAC A;  1VKU A;  4MRT C;  2VSQ A;  2L9F A;  2MR8 A;  2MF4 A;  1F80 D;  2K92 A;  5HVC A;  1NQ4 A;  2LML A;  2XZ0 D;  1T8K A;  2K0X A;  3EJB A;  2LTE A;  4H2Y C;  2L4B A;  2JGP A;  2JU2 A;  2KOR A;  4PWV B;  4H2W C;  1HY8 A;  2K94 A;  2DNW A;  2LL8 A;  4NEO A;  1ACP A;  2FQ0 A;  2FVA A;  2PNG A;  2K93 A;  3GZM A;  2CGQ A;  1KLP A;  2FAE A;  2AFD A;  2LIW A;  4BPF A;  2AVA A;  1AF8 A;  2LIU A;  4H2X C;  2KG9 A;  2L22 A;  1L0I A;  2JU1 A;  2EHS A;  2EHT A;  2KOQ A;  2FAD A;  3GZL A;  2CQ8 A;  2FVF A;  2KG6 A;  3EJD A;  2KOS A;  2XZ1 C;  5EJD A;  1OR5 A;  2K2Q A;  2KGC A;  1DV5 A;  2KW2 A;  2LPK A;  2JQ4 A;  5KP6 B;  2M5R A;  2FHS C;  5KP7 B;  2MD9 A;  3LMO A;  4BPG A;  2AF8 A;  4IZ6 A;  2KG8 A;  2CNR A;  5KP8 B;  2KGA A;  2AFE A;  2K0Y A;  2L0Q A;  1X3O A; 
#chains in the Genus database with same CATH topology
 2QA4 P;  3WBH A;  2MR7 A;  1RO0 A;  2N6Z A;  3CC2 P;  3RG2 A;  2PEQ A;  2EIA A;  2Z46 A;  3HZQ A;  4CA3 A;  4M0I A;  3G28 A;  3G0V A;  1EIA A;  3CCS P;  2KGD A;  2PEK A;  1YI2 P;  4U0D A;  2N5I A;  1BXI A;  2KR5 A;  3G1G A;  1NJI Q;  1E6J P;  2L6E A;  5DCK A;  2MVV A;  1Q82 Q;  1VKU A;  1RO2 A;  4UHP B;  2KOD A;  2MR8 A;  4IPY A;  5EW5 E;  1F80 D;  2BHV A;  2K92 A;  3U43 A;  1YJN P;  2XZ0 D;  2LTE A;  2Z44 A;  4PWV B;  1HY8 A;  3CMA P;  1QVF O;  2K93 A;  1GXH A;  1IMP A;  2VLO A;  3Q20 A;  3G71 P;  1VHN A;  4QKO A;  1QRJ A;  1AF8 A;  1UJZ A;  2KG9 A;  2VLQ A;  2EHS A;  2EHT A;  3CD6 P;  3CCM P;  4U0C A;  2KOS A;  3G1I A;  2PY8 A;  1KQS O;  1S72 P;  3M1M A;  5KP7 B;  1MZ8 A;  3GJN A;  5F2N A;  4IZ6 A;  2KG8 A;  1M6E X;  1X3O A;  1L0H A;  3NY7 B;  1M90 Q;  3CE7 A;  2N5H A;  3H0D A;  1E0H A;  1M1K Q;  2NO8 A;  2FVE A;  4PXH B;  4DG9 A;  1VQ6 P;  2CG5 B;  1Q86 Q;  2XV6 A;  3CCV P;  3GKL C;  1HQB A;  2KGE A;  4BPH A;  2FQ2 A;  4XFZ A;  3G6E P;  4GR2 A;  1YIT P;  2WPT A;  2GDY A;  2LKI A;  2N98 A;  2MVU A;  2JYG A;  5HGM A;  4MRT C;  2M8P A;  2VSQ A;  3CCE P;  2MF4 A;  5BS2 A;  2LML A;  1BAJ A;  1ZMB A;  2GZI A;  2GZG A;  2GZF A;  4H2Y C;  2L4B A;  2JU2 A;  1W2B O;  2LF4 A;  1KC8 Q;  1ACP A;  3DPH A;  1VQO P;  1VQ7 P;  2FVA A;  3CPW O;  1KLP A;  3G4S P;  2FAE A;  2K0D X;  1YJ9 P;  2JBG A;  4BPF A;  2AVA A;  2PEI A;  3DS1 A;  4H2X C;  2L22 A;  2VLP A;  4F37 A;  1L0I A;  1JJ2 O;  2FAD A;  3GZL A;  3EJD A;  1VQ8 P;  2XZ1 C;  2PEM A;  2K2Q A;  2GZJ A;  1VQK P;  4BPG A;  2BUO A;  3E2D A;  3CCR P;  2ONT A;  5KP8 B;  3DTJ A;  2KGA A;  2K0Y A;  5JPA A;  3RG6 C;  4HKG A;  5I4T G;  5F2K A;  3CC7 P;  1VQ4 P;  1KD1 Q;  2OAR A;  1DNY A;  2K5X A;  4QNB A;  2P9X A;  5CZD B;  3EJE A;  2QNW A;  2PEO A;  3H4E A;  2N50 A;  5BS1 A;  2EG5 A;  2JB0 A;  3CCL P;  1VQN P;  1IUQ A;  3H47 A;  2ROQ A;  3CCJ P;  2N6Y A;  2FAC A;  1VQL P;  5HGO A;  4XRQ A;  2JYL A;  1M74 A;  1M6N A;  1VQP P;  1NQ4 A;  4U0A A;  3HYB A;  1T8K A;  2K0X A;  2PEN A;  2JGP A;  2KOR A;  4H2W C;  2XXM A;  1UNK A;  5HGL A;  2DNW A;  4NEO A;  4GR6 A;  2FQ0 A;  3OW2 O;  3GZM A;  3I56 P;  4XFX A;  2CGQ A;  3CCU P;  2OTL P;  1RNI A;  1AYI A;  1QVG O;  3B5I A;  2KOQ A;  2QEX P;  2CQ8 A;  3P05 A;  2KG6 A;  2Z45 A;  4U0B A;  3G26 A;  3CCQ P;  5HGN A;  5EJD A;  4WYM A;  3CXC O;  2LPK A;  5KP6 B;  7CEI A;  2FHS C;  4U0F A;  2MD9 A;  3LMO A;  2AF8 A;  4PH1 A;  2CWO A;  4XFY A;  3MGE A;  2EFJ A;  2KWL A;  1Z6M A;  3B4Q A;  4COP A;  4R0M A;  2X2B A;  1IMQ A;  2FQ1 A;  1ZNV A;  3DS4 A;  1FR2 A;  2GYK A;  2GDX A;  1AUM A;  2KOP A;  1K73 Q;  5HV8 A;  2LOL A;  1Q81 Q;  2KOO A;  3NTE A;  2MY5 A;  1YHQ P;  1N8R Q;  2GDW A;  1Q7Y Q;  2E1M A;  3VRL C;  1EOQ A;  1VQM P;  2L9F A;  3CC4 P;  5HVC A;  2DGY A;  3DS5 A;  3EJB A;  2XT1 A;  2ERH A;  2GZE A;  3I55 P;  3G29 A;  1K8A Q;  1CEI A;  2VLN A;  4XRO A;  2K94 A;  1YIJ P;  2PEJ A;  2M8N A;  2LL8 A;  2M8L A;  2PNG A;  1A43 A;  1K30 A;  3CME P;  3LRY A;  3DS0 A;  1EMV A;  4U0E A;  2AFD A;  2JO0 A;  1K9M Q;  2LIW A;  2LIU A;  3DS3 A;  2JU1 A;  2OTJ P;  2FVF A;  3DS2 A;  1GPJ A;  1GXG A;  1VQ5 P;  1VQ9 P;  1OR5 A;  2KGC A;  1DV5 A;  4COC A;  2KW2 A;  1A8O A;  2JQ4 A;  2M5R A;  3G21 A;  1D1D A;  1YJW P;  2CNR A;  4PH0 A;  2JAZ A;  2AFE A;  2L0Q A;  5F2O A; 
#chains in the Genus database with same CATH homology
 1L0H A;  2KWL A;  4HKG A;  3NY7 B;  3CE7 A;  2N5H A;  4R0M A;  2X2B A;  2MR7 A;  2FVE A;  2FQ1 A;  4PXH B;  2N6Z A;  4DG9 A;  2CG5 B;  3RG2 A;  2GDX A;  1HQB A;  2KGE A;  4BPH A;  2KOP A;  1DNY A;  5HV8 A;  4CA3 A;  2LOL A;  2FQ2 A;  2KOO A;  2MY5 A;  5CZD B;  3EJE A;  2QNW A;  2KGD A;  2N50 A;  2GDW A;  2N5I A;  2GDY A;  2KR5 A;  2LKI A;  2N98 A;  2MVU A;  2ROQ A;  2N6Y A;  2MVV A;  2FAC A;  1VKU A;  4MRT C;  2VSQ A;  2L9F A;  2MR8 A;  2MF4 A;  1F80 D;  2K92 A;  5HVC A;  1NQ4 A;  2LML A;  2XZ0 D;  1T8K A;  2K0X A;  3EJB A;  2LTE A;  4H2Y C;  2L4B A;  2JGP A;  2JU2 A;  2KOR A;  4PWV B;  4H2W C;  1HY8 A;  2K94 A;  2DNW A;  2LL8 A;  4NEO A;  1ACP A;  2FQ0 A;  2FVA A;  2PNG A;  2K93 A;  3GZM A;  2CGQ A;  1KLP A;  2FAE A;  2AFD A;  2LIW A;  4BPF A;  2AVA A;  1AF8 A;  2LIU A;  4H2X C;  2KG9 A;  2L22 A;  1L0I A;  2JU1 A;  2EHS A;  2EHT A;  2KOQ A;  2FAD A;  3GZL A;  2CQ8 A;  2FVF A;  2KG6 A;  3EJD A;  2KOS A;  2XZ1 C;  5EJD A;  1OR5 A;  2K2Q A;  2KGC A;  1DV5 A;  2KW2 A;  2LPK A;  2JQ4 A;  5KP6 B;  2M5R A;  2FHS C;  5KP7 B;  2MD9 A;  3LMO A;  4BPG A;  2AF8 A;  4IZ6 A;  2KG8 A;  2CNR A;  5KP8 B;  2KGA A;  2AFE A;  2K0Y A;  2L0Q A;  1X3O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4H2YC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations