The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
28
|
sequence length |
85
|
structure length |
85
|
Chain Sequence |
PTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A triclinic crystal structure of the carboxy-terminal domain of HIV-1 capsid protein with four molecules in the asymmetric unit reveals a novel packing interface.
pubmed doi rcsb |
| molecule keywords |
Capsid protein p24
|
| molecule tags |
Viral protein
|
| source organism |
Human immunodeficiency virus type 1
|
| total genus |
28
|
| structure length |
85
|
| sequence length |
85
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.7.7.49: RNA-directed DNA polymerase. |
| pdb deposition date | 2013-01-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A |
#chains in the Genus database with same CATH superfamily 1AUM A; 3NTE A; 3G26 A; 2M8P A; 3G1I A; 3G1G A; 3LRY A; 4COC A; 2M8N A; 1EIA A; 4XFY A; 2ONT A; 4U0A A; 3DS3 A; 2LF4 A; 5I4T G; 3G0V A; 2KOD A; 3MGE A; 3G21 A; 4U0B A; 2M8L A; 4XRQ A; 2EIA A; 3VRL C; 5HGN A; 5DCK A; 5JPA A; 2XT1 A; 1E6J P; 3DS1 A; 3H4E A; 3DTJ A; 4WYM A; 2JYL A; 4U0E A; 4XFZ A; 5HGO A; 3DS4 A; 2JYG A; 2BUO A; 4M0I A; 3P05 A; 4PH0 A; 4COP A; 4PH1 A; 4U0C A; 1A8O A; 2JO0 A; 1QRJ A; 2XV6 A; 4U0D A; 1EOQ A; 3DS2 A; 2XXM A; 3DS5 A; 4XFX A; 1BAJ A; 2L6E A; 4XRO A; 3DS0 A; 3DPH A; 3G28 A; 5HGL A; 4U0F A; 1D1D A; 3H47 A; 1A43 A; 4QNB A; 3G29 A; 5HGM A; 4IPY A; #chains in the Genus database with same CATH topology 3LMO A; 2KGD A; 2AFD A; 1T8K A; 1Q81 Q; 4PWV B; 2M8L A; 1M90 Q; 1VQ7 P; 2FHS C; 2Z46 A; 5KP6 B; 2Z44 A; 1Q82 Q; 1UJZ A; 1OR5 A; 3RG6 C; 1Q7Y Q; 2XV6 A; 2LL8 A; 3DPH A; 2MVV A; 1A43 A; 1VQN P; 2FVE A; 1K30 A; 3GZL A; 1VHN A; 2FQ1 A; 3GJN A; 1NJI Q; 2VLP A; 1W2B O; 4XFZ A; 1IMP A; 2BUO A; 3CCJ P; 1Z6M A; 3GKL C; 2KG6 A; 3G26 A; 2FQ0 A; 1YIJ P; 1VQM P; 2NO8 A; 1JJ2 O; 1IUQ A; 2PEO A; 2MVU A; 2L0Q A; 3CE7 A; 2KOR A; 3CXC O; 2MR7 A; 3EJE A; 1VQ8 P; 2BHV A; 5HGO A; 2K5X A; 1MZ8 A; 4U0C A; 1KC8 Q; 4XRO A; 1M74 A; 1S72 P; 2EHS A; 3G6E P; 7CEI A; 3H47 A; 3G29 A; 2KOO A; 1L0I A; 1QVG O; 1M6E X; 2LIU A; 1VQ6 P; 4HKG A; 2VLO A; 3CCM P; 5F2O A; 2KR5 A; 5BS2 A; 1E6J P; 2JYL A; 3CMA P; 2KGA A; 1A8O A; 2PEM A; 2JO0 A; 3CCL P; 2QEX P; 3RG2 A; 2M8P A; 3G1G A; 1VQ5 P; 1AYI A; 1EIA A; 2CQ8 A; 2OTL P; 2KGE A; 1GXH A; 2EIA A; 1BXI A; 2GZG A; 4BPF A; 3CPW O; 2L9F A; 2KG8 A; 4H2Y C; 2VSQ A; 2OAR A; 1Q86 Q; 1AF8 A; 2JGP A; 5HVC A; 5EW5 E; 1AUM A; 2X2B A; 1HQB A; 2PEN A; 1K73 Q; 1GPJ A; 2KOS A; 3HYB A; 3CCV P; 2JYG A; 1DV5 A; 1YHQ P; 1VKU A; 1YJN P; 4H2X C; 1EOQ A; 2FVA A; 1BAJ A; 1FR2 A; 4IPY A; 2M8N A; 2CNR A; 4DG9 A; 2QA4 P; 3CME P; 1YJ9 P; 3GZM A; 2PEK A; 2FQ2 A; 3E2D A; 1CEI A; 4GR2 A; 2KWL A; 1VQ4 P; 1YI2 P; 4U0D A; 3DS5 A; 2PY8 A; 4U0F A; 2P9X A; 3NTE A; 1M6N A; 2N6Z A; 1L0H A; 2LTE A; 1N8R Q; 2AF8 A; 1EMV A; 2MR8 A; 3CD6 P; 2ERH A; 1DNY A; 4WYM A; 1RNI A; 1K9M Q; 1VQO P; 2K0D X; 3DS0 A; 3G28 A; 2PNG A; 2EHT A; 3Q20 A; 2XZ0 D; 2AFE A; 5F2K A; 2LML A; 3H0D A; 2L22 A; 3B5I A; 3CC7 P; 1ZNV A; 3CCQ P; 2K94 A; 2XZ1 C; 2MY5 A; 2LPK A; 3I55 P; 1RO0 A; 2N98 A; 4PXH B; 5CZD B; 2KOP A; 4R0M A; 3NY7 B; 2OTJ P; 4CA3 A; 2GYK A; 5EJD A; 2KGC A; 3EJB A; 1ZMB A; 2LIW A; 2GDW A; 2PEJ A; 4H2W C; 1K8A Q; 1KLP A; 4UHP B; 2KOQ A; 2LOL A; 4COP A; 2GDX A; 2WPT A; 2K2Q A; 2PEI A; 5HGL A; 4BPG A; 1VQ9 P; 3DS3 A; 2EFJ A; 3CCS P; 2CGQ A; 1E0H A; 2N5I A; 4F37 A; 1ACP A; 4QKO A; 5HGN A; 2AVA A; 3HZQ A; 3DS1 A; 3DTJ A; 2MF4 A; 3DS4 A; 3CC4 P; 2VLQ A; 5JPA A; 2XXM A; 2DGY A; 2KG9 A; 3EJD A; 2Z45 A; 4QNB A; 1KQS O; 2FAC A; 2LF4 A; 2N50 A; 2KOD A; 2GDY A; 1KD1 Q; 4BPH A; 2M5R A; 2JAZ A; 5HV8 A; 2K92 A; 2QNW A; 4IZ6 A; 2K0X A; 3M1M A; 2L6E A; 2FAE A; 2MD9 A; 1RO2 A; 1UNK A; 3B4Q A; 2N5H A; 1YJW P; 3CC2 P; 2JB0 A; 1YIT P; 3VRL C; 5BS1 A; 5KP8 B; 5KP7 B; 2JU1 A; 3I56 P; 3G4S P; 3CCU P; 3CCE P; 2ROQ A; 4GR6 A; 2JQ4 A; 1QVF O; 1VQL P; 2E1M A; 1X3O A; 1F80 D; 4COC A; 2GZE A; 4U0A A; 5I4T G; 3MGE A; 1NQ4 A; 4U0B A; 2DNW A; 2XT1 A; 3H4E A; 3U43 A; 4U0E A; 3P05 A; 1IMQ A; 4PH1 A; 4XFX A; 2JBG A; 3DS2 A; 3WBH A; 2LKI A; 2FVF A; 2N6Y A; 3LRY A; 4XFY A; 2CG5 B; 3G0V A; 2K93 A; 2L4B A; 2VLN A; 1VQK P; 1VQP P; 2PEQ A; 2CWO A; 4NEO A; 5F2N A; 4PH0 A; 4M0I A; 2EG5 A; 4MRT C; 1HY8 A; 2GZJ A; 2KW2 A; 5HGM A; 5DCK A; 3G1I A; 2FAD A; 2JU2 A; 2ONT A; 2GZF A; 3OW2 O; 3G21 A; 3G71 P; 4XRQ A; 2GZI A; 1GXG A; 3CCR P; 1QRJ A; 1D1D A; 2K0Y A; 1M1K Q; #chains in the Genus database with same CATH homology 2M8P A; 3G1G A; 1RO2 A; 1VQ5 P; 5F2K A; 1EIA A; 2OTL P; 3H0D A; 1Q81 Q; 3B5I A; 3CC7 P; 3CCQ P; 1YJW P; 3CC2 P; 2M8L A; 1M90 Q; 1YIT P; 1VQ7 P; 2EIA A; 3VRL C; 2Z46 A; 3I55 P; 1RO0 A; 3CPW O; 2Z44 A; 1Q82 Q; 5BS1 A; 3I56 P; 3RG6 C; 3G4S P; 1Q7Y Q; 3CCU P; 2XV6 A; 3CCE P; 2OTJ P; 2OAR A; 3DPH A; 1Q86 Q; 4GR6 A; 1ZMB A; 1QVF O; 1VQL P; 1A43 A; 2E1M A; 1VQN P; 1AUM A; 1K30 A; 2PEJ A; 4COC A; 4U0A A; 5I4T G; 2PEN A; 3MGE A; 1K73 Q; 4U0B A; 1NJI Q; 1K8A Q; 1W2B O; 2XT1 A; 4XFZ A; 3H4E A; 3HYB A; 4U0E A; 3CCV P; 2JYG A; 2BUO A; 3P05 A; 4COP A; 1YHQ P; 4PH1 A; 1YJN P; 4XFX A; 1EOQ A; 3DS2 A; 1BAJ A; 2PEI A; 3WBH A; 3CCJ P; 5HGL A; 4IPY A; 3G26 A; 3LRY A; 2M8N A; 1YIJ P; 4XFY A; 1VQM P; 2QA4 P; 1JJ2 O; 3CME P; 1VQ9 P; 3DS3 A; 1YJ9 P; 1IUQ A; 2EFJ A; 2PEK A; 3G0V A; 3CCS P; 2PEO A; 1VQK P; 3CXC O; 5HGN A; 1VQP P; 3E2D A; 2PEQ A; 3HZQ A; 2CWO A; 3DS1 A; 5F2N A; 2BHV A; 3DTJ A; 1VQ8 P; 5HGO A; 4GR2 A; 3DS4 A; 4PH0 A; 4M0I A; 1VQ4 P; 4U0C A; 3CC4 P; 5JPA A; 1YI2 P; 4U0D A; 4XRO A; 1M74 A; 2XXM A; 2EG5 A; 3DS5 A; 1S72 P; 1KC8 Q; 3G6E P; 2PY8 A; 4U0F A; 2P9X A; 2DGY A; 3H47 A; 4QNB A; 3G29 A; 2Z45 A; 5HGM A; 5DCK A; 3NTE A; 1M6N A; 1QVG O; 3G1I A; 1KQS O; 1M6E X; 1VQ6 P; 2ONT A; 3OW2 O; 2LF4 A; 1N8R Q; 2KOD A; 3CCM P; 3G21 A; 5F2O A; 3G71 P; 4XRQ A; 1KD1 Q; 3CD6 P; 5BS2 A; 1E6J P; 4WYM A; 2JYL A; 1RNI A; 3CMA P; 1K9M Q; 1A8O A; 1VQO P; 2PEM A; 1QRJ A; 2JO0 A; 3CCR P; 3CCL P; 3M1M A; 2L6E A; 3DS0 A; 3G28 A; 1M1K Q; 1D1D A; 2QEX P; 3Q20 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
