5CZDB

The complex structure of vink with vinl
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
77
structure length
77
Chain Sequence
MWDAQFENLLRRYLPFLSADQPLEQDINLRDIGLDSLGTVELLSELENTYDVHFQDEALTKETFETPGVLWKTLSQM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-12)TI1 (14-17)AH2 (36-50)3H1 (29-32)TI2 (18-21)AH3 (67-76)TI3 (24-27)3H2 (56-59)3H3 (61-64)EMPTYUpdating...
connected with : NaN
molecule tags Transferase
source organism Streptomyces halstedii
publication title Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis.
pubmed doi rcsb
molecule keywords Malonyl-CoA-[acyl-carrier-protein] transacylase
total genus 20
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2015-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 5czdB00
4H2WC 2CNRA 2ROQA 2KW2A 3EJEA 5HV8A 2N6ZA 2DNWA 2K93A 2KORA 2LIUA 2MR7A 1OR5A 3GZMA 2GDXA 2KOQA 2KOPA 3GZLA 2KG8A 1L0IA 2MF4A 2LTEA 2LL8A 1VKUA 4NEOA 3RG2A 2MY5A 2GDWA 2KGDA 5KP6B 1HQBA 2L22A 2LPKA 2EHSA 2AVAA 2XZ1C 5HVCA 4CA3A 2K94A 1ACPA 2AF8A 2KWLA 2L0QA 1X3OA 2XZ0D 2JU2A 2FHSC 4IZ6A 2KOSA 2FVFA 4PWVB 1L0HA 2K92A 2JU1A 2QNWA 2K0YA 2AFDA 2MVVA 4HKGA 2K0XA 2LKIA 2KG9A 2GDYA 2LIWA 4R0MA 4BPHA 2KGEA 2N5IA 2N50A 3CE7A 2MVUA 2CGQA 2FQ2A 2KG6A 1DV5A 2MD9A 2FADA 2PNGA 1AF8A 2FACA 4PXHB 2MR8A 1DNYA 2FAEA 5KP7B 5KP8B 2CQ8A 2X2BA 3LMOA 5EJDA 3NY7B 2L4BA 4H2XC 2AFEA 1F80D 2FQ0A 2LOLA 2N98A 4MRTC 2JGPA 1T8KA 2LMLA 2L9FA 2FVEA 2FQ1A 2KGAA 3EJDA 2N5HA 1HY8A 2N6YA 2KR5A 2CG5B 2EHTA 5CZDB 4BPGA 1NQ4A 1KLPA 3EJBA 4H2YC 2JQ4A 4DG9A 2KOOA 2FVAA 2KGCA 4BPFA 2M5RA 2VSQA 2K2QA
chains in the Genus database with same CATH superfamily
2JYGA 2KW2A 2N6ZA 4PH0A 2DNWA 2KORA 2GZGA 1OR5A 1YJNP 3HYBA 1S72P 3GZMA 2M8LA 4XFYA 4M0IA 3GZLA 7CEIA 2LL8A 1VKUA 2VLNA 1VQ8P 1QVGO 2ERHA 1HQBA 2Z45A 2JO0A 2PENA 1VQMP 2K94A 1ZMBA 2L0QA 2KOSA 4U0FA 5BS2A 3H4EA 1YI2P 2QNWA 1RO0A 5EW5E 2MVVA 4HKGA 3CC7P 2QA4P 2JB0A 3GKLC 2KG9A 1VQ5P 1VQOP 4QNBA 2KGEA 2N5IA 2N50A 2XV6A 3CE7A 1DV5A 2OTJP 3G1GA 1MZ8A 3DTJA 1DNYA 1AUMA 5KP7B 3CCMP 2L4BA 2AFEA 2FQ0A 2N98A 2PEQA 1K73Q 2FVEA 2GZEA 3CXCO 1M6NA 2FQ1A 2KGAA 1BXIA 2L6EA 2NO8A 1HY8A 3B5IA 4COPA 3DS1A 2EG5A 1VQKP 3CCJP 2KR5A 2CG5B 4PH1A 2DGYA 3EJBA 2M5RA 1EMVA 3I55P 2ROQA 3B4QA 3RG6C 2K93A 2MR7A 1M1KQ 4U0BA 3CCUP 2JYLA 3CC4P 1M90Q 2KG8A 1RO2A 2JAZA 3LRYA 4NEOA 2KGDA 1IMQA 2L22A 2EHSA 1YIJP 1YJ9P 3G0VA 5HVCA 1Q82Q 2XZ0D 2JU2A 2FVFA 2K92A 3G1IA 2WPTA 2K0YA 1EOQA 5F2KA 3WBHA 2EFJA 3G21A 2P9XA 4BPHA 2M8PA 1M74A 4U0CA 3CC2P 3GJNA 2MVUA 2CGQA 2FQ2A 4XROA 1VQ4P 1A43A 1AF8A 3DS3A 4XFZA 4GR2A 1NJIQ 3CCQP 4QKOA 5KP8B 2CQ8A 1FR2A 2Z44A 1E0HA 2PEOA 3HZQA 1A8OA 1VQLP 4MRTC 1VQPP 2JGPA 2OARA 3EJDA 2OTLP 2N6YA 5HGLA 4BPGA 1E6JP 4DG9A 1YHQP 4BPFA 3DPHA 3CCLP 3DS0A 3EJEA 5HV8A 1CEIA 3CCRP 1K30A 1KQSO 2PEIA 1RNIA 4IPYA 2GDXA 2KOPA 1L0IA 2MF4A 2LTEA 3RG2A 1N8RQ 3G71P 2PY8A 1W2BO 1Q86Q 2Z46A 5HGOA 2AF8A 5JPAA 2FHSC 2PEJA 3DS4A 1IMPA 4PWVB 1L0HA 3G29A 3G28A 2JU1A 1ZNVA 2PEKA 2GZJA 2K5XA 2AFDA 2GYKA 1UNKA 2ONTA 2E1MA 3CMAP 2LIWA 4R0MA 4U0AA 3DS5A 2MD9A 5BS1A 3OW2O 1BAJA 4UHPB 2MR8A 4U0DA 5I4TG 1M6EX 1UJZA 2KODA 5HGMA 1GXHA 2X2BA 1Z6MA 3Q20A 5EJDA 1JJ2O 3NY7B 4H2XC 1F80D 4GR6A 2K0DX 2LOLA 1T8KA 3NTEA 4U0EA 1GPJA 1EIAA 2N5HA 3DS2A 3G26A 1VQ7P 3CCEP 2EHTA 5CZDB 2BHVA 1QRJA 2LF4A 1K8AQ 4H2YC 2JQ4A 2KOOA 3U43A 2BUOA 2VSQA 1VHNA 1Q81Q 2JBGA 4H2WC 2CNRA 2XT1A 5F2OA 2PEMA 2XXMA 4WYMA 3MGEA 2LIUA 1VQNP 1KC8Q 2CWOA 4F37A 2KOQA 3G4SP 2GZFA 5HGNA 3E2DA 2MY5A 2GDWA 5KP6B 2LPKA 2VLPA 2AVAA 2XZ1C 4CA3A 1ACPA 2KWLA 3G6EP 1X3OA 4IZ6A 4XFXA 3H0DA 3CPWO 2GZIA 2VLOA 3VRLC 2K0XA 5F2NA 3P05A 2LKIA 1QVFO 2GDYA 2M8NA 1Q7YQ 2VLQA 3M1MA 2EIAA 5DCKA 2KG6A 1AYIA 2FADA 1YITP 2PNGA 1KD1Q 1VQ6P 2FACA 4PXHB 4COCA 2FAEA 1VQ9P 3LMOA 3CD6P 1D1DA 1YJWP 3CCVP 2LMLA 2L9FA 1GXGA 3CCSP 3I56P 2QEXP 1K9MQ 1NQ4A 1KLPA 1IUQA 2FVAA 3H47A 2KGCA 4XRQA 3CMEP 2K2QA
chains in the Genus database with same CATH topology
4H2WC 2CNRA 2ROQA 2KW2A 3EJEA 5HV8A 2N6ZA 2DNWA 2K93A 2KORA 2LIUA 2MR7A 1OR5A 3GZMA 2GDXA 2KOQA 2KOPA 3GZLA 2KG8A 1L0IA 2MF4A 2LTEA 2LL8A 1VKUA 4NEOA 3RG2A 2MY5A 2GDWA 2KGDA 5KP6B 1HQBA 2L22A 2LPKA 2EHSA 2AVAA 2XZ1C 5HVCA 4CA3A 2K94A 1ACPA 2AF8A 2KWLA 2L0QA 1X3OA 2XZ0D 2JU2A 2FHSC 4IZ6A 2KOSA 2FVFA 4PWVB 1L0HA 2K92A 2JU1A 2QNWA 2K0YA 2AFDA 2MVVA 4HKGA 2K0XA 2LKIA 2KG9A 2GDYA 2LIWA 4R0MA 4BPHA 2KGEA 2N5IA 2N50A 3CE7A 2MVUA 2CGQA 2FQ2A 2KG6A 1DV5A 2MD9A 2FADA 2PNGA 1AF8A 2FACA 4PXHB 2MR8A 1DNYA 2FAEA 5KP7B 5KP8B 2CQ8A 2X2BA 3LMOA 5EJDA 3NY7B 2L4BA 4H2XC 2AFEA 1F80D 2FQ0A 2LOLA 2N98A 4MRTC 2JGPA 1T8KA 2LMLA 2L9FA 2FVEA 2FQ1A 2KGAA 3EJDA 2N5HA 1HY8A 2N6YA 2KR5A 2CG5B 2EHTA 5CZDB 4BPGA 1NQ4A 1KLPA 3EJBA 4H2YC 2JQ4A 4DG9A 2KOOA 2FVAA 2KGCA 4BPFA 2M5RA 2VSQA 2K2QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H2W C;  2CNR A;  2ROQ A;  2KW2 A;  3EJE A;  5HV8 A;  2N6Z A;  2DNW A;  2K93 A;  2KOR A;  2LIU A;  2MR7 A;  1OR5 A;  3GZM A;  2GDX A;  2KOQ A;  2KOP A;  3GZL A;  2KG8 A;  1L0I A;  2MF4 A;  2LTE A;  2LL8 A;  1VKU A;  4NEO A;  3RG2 A;  2MY5 A;  2GDW A;  2KGD A;  5KP6 B;  1HQB A;  2L22 A;  2LPK A;  2EHS A;  2AVA A;  2XZ1 C;  5HVC A;  4CA3 A;  2K94 A;  1ACP A;  2AF8 A;  2KWL A;  2L0Q A;  1X3O A;  2XZ0 D;  2JU2 A;  2FHS C;  4IZ6 A;  2KOS A;  2FVF A;  4PWV B;  1L0H A;  2K92 A;  2JU1 A;  2QNW A;  2K0Y A;  2AFD A;  2MVV A;  4HKG A;  2K0X A;  2LKI A;  2KG9 A;  2GDY A;  2LIW A;  4R0M A;  4BPH A;  2KGE A;  2N5I A;  2N50 A;  3CE7 A;  2MVU A;  2CGQ A;  2FQ2 A;  2KG6 A;  1DV5 A;  2MD9 A;  2FAD A;  2PNG A;  1AF8 A;  2FAC A;  4PXH B;  2MR8 A;  1DNY A;  2FAE A;  5KP7 B;  5KP8 B;  2CQ8 A;  2X2B A;  3LMO A;  5EJD A;  3NY7 B;  2L4B A;  4H2X C;  2AFE A;  1F80 D;  2FQ0 A;  2LOL A;  2N98 A;  4MRT C;  2JGP A;  1T8K A;  2LML A;  2L9F A;  2FVE A;  2FQ1 A;  2KGA A;  3EJD A;  2N5H A;  1HY8 A;  2N6Y A;  2KR5 A;  2CG5 B;  2EHT A;  5CZD B;  4BPG A;  1NQ4 A;  1KLP A;  3EJB A;  4H2Y C;  2JQ4 A;  4DG9 A;  2KOO A;  2FVA A;  2KGC A;  4BPF A;  2M5R A;  2VSQ A;  2K2Q A; 
#chains in the Genus database with same CATH topology
 2JYG A;  2KW2 A;  2N6Z A;  4PH0 A;  2DNW A;  2KOR A;  2GZG A;  1OR5 A;  1YJN P;  3HYB A;  1S72 P;  3GZM A;  2M8L A;  4XFY A;  4M0I A;  3GZL A;  7CEI A;  2LL8 A;  1VKU A;  2VLN A;  1VQ8 P;  1QVG O;  2ERH A;  1HQB A;  2Z45 A;  2JO0 A;  2PEN A;  1VQM P;  2K94 A;  1ZMB A;  2L0Q A;  2KOS A;  4U0F A;  5BS2 A;  3H4E A;  1YI2 P;  2QNW A;  1RO0 A;  5EW5 E;  2MVV A;  4HKG A;  3CC7 P;  2QA4 P;  2JB0 A;  3GKL C;  2KG9 A;  1VQ5 P;  1VQO P;  4QNB A;  2KGE A;  2N5I A;  2N50 A;  2XV6 A;  3CE7 A;  1DV5 A;  2OTJ P;  3G1G A;  1MZ8 A;  3DTJ A;  1DNY A;  1AUM A;  5KP7 B;  3CCM P;  2L4B A;  2AFE A;  2FQ0 A;  2N98 A;  2PEQ A;  1K73 Q;  2FVE A;  2GZE A;  3CXC O;  1M6N A;  2FQ1 A;  2KGA A;  1BXI A;  2L6E A;  2NO8 A;  1HY8 A;  3B5I A;  4COP A;  3DS1 A;  2EG5 A;  1VQK P;  3CCJ P;  2KR5 A;  2CG5 B;  4PH1 A;  2DGY A;  3EJB A;  2M5R A;  1EMV A;  3I55 P;  2ROQ A;  3B4Q A;  3RG6 C;  2K93 A;  2MR7 A;  1M1K Q;  4U0B A;  3CCU P;  2JYL A;  3CC4 P;  1M90 Q;  2KG8 A;  1RO2 A;  2JAZ A;  3LRY A;  4NEO A;  2KGD A;  1IMQ A;  2L22 A;  2EHS A;  1YIJ P;  1YJ9 P;  3G0V A;  5HVC A;  1Q82 Q;  2XZ0 D;  2JU2 A;  2FVF A;  2K92 A;  3G1I A;  2WPT A;  2K0Y A;  1EOQ A;  5F2K A;  3WBH A;  2EFJ A;  3G21 A;  2P9X A;  4BPH A;  2M8P A;  1M74 A;  4U0C A;  3CC2 P;  3GJN A;  2MVU A;  2CGQ A;  2FQ2 A;  4XRO A;  1VQ4 P;  1A43 A;  1AF8 A;  3DS3 A;  4XFZ A;  4GR2 A;  1NJI Q;  3CCQ P;  4QKO A;  5KP8 B;  2CQ8 A;  1FR2 A;  2Z44 A;  1E0H A;  2PEO A;  3HZQ A;  1A8O A;  1VQL P;  4MRT C;  1VQP P;  2JGP A;  2OAR A;  3EJD A;  2OTL P;  2N6Y A;  5HGL A;  4BPG A;  1E6J P;  4DG9 A;  1YHQ P;  4BPF A;  3DPH A;  3CCL P;  3DS0 A;  3EJE A;  5HV8 A;  1CEI A;  3CCR P;  1K30 A;  1KQS O;  2PEI A;  1RNI A;  4IPY A;  2GDX A;  2KOP A;  1L0I A;  2MF4 A;  2LTE A;  3RG2 A;  1N8R Q;  3G71 P;  2PY8 A;  1W2B O;  1Q86 Q;  2Z46 A;  5HGO A;  2AF8 A;  5JPA A;  2FHS C;  2PEJ A;  3DS4 A;  1IMP A;  4PWV B;  1L0H A;  3G29 A;  3G28 A;  2JU1 A;  1ZNV A;  2PEK A;  2GZJ A;  2K5X A;  2AFD A;  2GYK A;  1UNK A;  2ONT A;  2E1M A;  3CMA P;  2LIW A;  4R0M A;  4U0A A;  3DS5 A;  2MD9 A;  5BS1 A;  3OW2 O;  1BAJ A;  4UHP B;  2MR8 A;  4U0D A;  5I4T G;  1M6E X;  1UJZ A;  2KOD A;  5HGM A;  1GXH A;  2X2B A;  1Z6M A;  3Q20 A;  5EJD A;  1JJ2 O;  3NY7 B;  4H2X C;  1F80 D;  4GR6 A;  2K0D X;  2LOL A;  1T8K A;  3NTE A;  4U0E A;  1GPJ A;  1EIA A;  2N5H A;  3DS2 A;  3G26 A;  1VQ7 P;  3CCE P;  2EHT A;  5CZD B;  2BHV A;  1QRJ A;  2LF4 A;  1K8A Q;  4H2Y C;  2JQ4 A;  2KOO A;  3U43 A;  2BUO A;  2VSQ A;  1VHN A;  1Q81 Q;  2JBG A;  4H2W C;  2CNR A;  2XT1 A;  5F2O A;  2PEM A;  2XXM A;  4WYM A;  3MGE A;  2LIU A;  1VQN P;  1KC8 Q;  2CWO A;  4F37 A;  2KOQ A;  3G4S P;  2GZF A;  5HGN A;  3E2D A;  2MY5 A;  2GDW A;  5KP6 B;  2LPK A;  2VLP A;  2AVA A;  2XZ1 C;  4CA3 A;  1ACP A;  2KWL A;  3G6E P;  1X3O A;  4IZ6 A;  4XFX A;  3H0D A;  3CPW O;  2GZI A;  2VLO A;  3VRL C;  2K0X A;  5F2N A;  3P05 A;  2LKI A;  1QVF O;  2GDY A;  2M8N A;  1Q7Y Q;  2VLQ A;  3M1M A;  2EIA A;  5DCK A;  2KG6 A;  1AYI A;  2FAD A;  1YIT P;  2PNG A;  1KD1 Q;  1VQ6 P;  2FAC A;  4PXH B;  4COC A;  2FAE A;  1VQ9 P;  3LMO A;  3CD6 P;  1D1D A;  1YJW P;  3CCV P;  2LML A;  2L9F A;  1GXG A;  3CCS P;  3I56 P;  2QEX P;  1K9M Q;  1NQ4 A;  1KLP A;  1IUQ A;  2FVA A;  3H47 A;  2KGC A;  4XRQ A;  3CME P;  2K2Q A; 
#chains in the Genus database with same CATH homology
 4H2W C;  2CNR A;  2ROQ A;  2KW2 A;  3EJE A;  5HV8 A;  2N6Z A;  2DNW A;  2K93 A;  2KOR A;  2LIU A;  2MR7 A;  1OR5 A;  3GZM A;  2GDX A;  2KOQ A;  2KOP A;  3GZL A;  2KG8 A;  1L0I A;  2MF4 A;  2LTE A;  2LL8 A;  1VKU A;  4NEO A;  3RG2 A;  2MY5 A;  2GDW A;  2KGD A;  5KP6 B;  1HQB A;  2L22 A;  2LPK A;  2EHS A;  2AVA A;  2XZ1 C;  5HVC A;  4CA3 A;  2K94 A;  1ACP A;  2AF8 A;  2KWL A;  2L0Q A;  1X3O A;  2XZ0 D;  2JU2 A;  2FHS C;  4IZ6 A;  2KOS A;  2FVF A;  4PWV B;  1L0H A;  2K92 A;  2JU1 A;  2QNW A;  2K0Y A;  2AFD A;  2MVV A;  4HKG A;  2K0X A;  2LKI A;  2KG9 A;  2GDY A;  2LIW A;  4R0M A;  4BPH A;  2KGE A;  2N5I A;  2N50 A;  3CE7 A;  2MVU A;  2CGQ A;  2FQ2 A;  2KG6 A;  1DV5 A;  2MD9 A;  2FAD A;  2PNG A;  1AF8 A;  2FAC A;  4PXH B;  2MR8 A;  1DNY A;  2FAE A;  5KP7 B;  5KP8 B;  2CQ8 A;  2X2B A;  3LMO A;  5EJD A;  3NY7 B;  2L4B A;  4H2X C;  2AFE A;  1F80 D;  2FQ0 A;  2LOL A;  2N98 A;  4MRT C;  2JGP A;  1T8K A;  2LML A;  2L9F A;  2FVE A;  2FQ1 A;  2KGA A;  3EJD A;  2N5H A;  1HY8 A;  2N6Y A;  2KR5 A;  2CG5 B;  2EHT A;  5CZD B;  4BPG A;  1NQ4 A;  1KLP A;  3EJB A;  4H2Y C;  2JQ4 A;  4DG9 A;  2KOO A;  2FVA A;  2KGC A;  4BPF A;  2M5R A;  2VSQ A;  2K2Q A; 
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similar chains in the pdb database (?% sequence similarity)

 
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