5DCKA

Crystal structure of fiv capsid c-terminal domain
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
71
structure length
71
Chain Sequence
HMVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANADCKKAMSHLKPESTLEEKLRACQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of FIV capsid C-terminal domain demonstrates lentiviral evasion of genetic fragility by coevolved substitutions.
pubmed doi rcsb
molecule tags Viral protein
source organism Feline immunodeficiency virus (isolate petaluma)
molecule keywords Capsid C-Terminal Domain
total genus 26
structure length 71
sequence length 71
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-08-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 5dckA00
3G21A 3H47A 3P05A 3G1GA 4XRQA 3MGEA 1A43A 4U0DA 2JYGA 3G0VA 4XROA 2M8LA 4COCA 3H4EA 4COPA 1EOQA 5HGMA 3DTJA 4XFZA 5HGOA 4WYMA 4PH0A 3DS4A 3DS2A 3G26A 1AUMA 3G28A 2XXMA 2XT1A 3DS1A 5DCKA 3G1IA 3DS5A 3NTEA 5HGNA 5JPAA 1D1DA 4XFYA 3DPHA 3DS0A 5I4TG 2JYLA 4QNBA 1BAJA 4U0FA 5HGLA 4PH1A 4U0BA 1E6JP 2L6EA 2M8PA 2M8NA 3LRYA 2EIAA 2KODA 4IPYA 4M0IA 2ONTA 3VRLC 1QRJA 2XV6A 2BUOA 2JO0A 4XFXA 1EIAA 4U0AA 3G29A 2LF4A 4U0CA 1A8OA 4U0EA 3DS3A
chains in the Genus database with same CATH superfamily
2MY5A 2KORA 1VQOP 1YI2P 2LL8A 4WYMA 3G26A 5JPAA 1K8AQ 1RNIA 3RG2A 2K94A 2JYLA 2DGYA 2GZJA 2PEMA 3CPWO 2LPKA 4IPYA 3NY7B 1QVGO 2FQ0A 3P05A 4H2YC 3E2DA 4XFZA 3CCJP 5HV8A 4U0BA 3G71P 2GZFA 2GZEA 4U0EA 4HKGA 3H47A 5F2KA 4R0MA 2JYGA 3DS4A 2KR5A 1GPJA 2KODA 2L0QA 2PEOA 2KG6A 2GZGA 3CCVP 2P9XA 2LKIA 2PNGA 4H2XC 1L0HA 2CWOA 1VQ6P 2AFDA 2KOPA 3CCQP 2XXMA 3WBHA 2KGEA 1KLPA 2FACA 1K30A 3DS0A 4QNBA 2JU2A 4MRTC 1IMQA 2BHVA 5KP6B 4GR6A 2JGPA 2BUOA 2CG5B 1L0IA 3CCMP 1HY8A 1Z6MA 2MD9A 1M1KQ 2N98A 5HGOA 2GZIA 2XZ0D 2PY8A 2E1MA 2N5HA 2N5IA 2XZ1C 2FVAA 2KG8A 1K9MQ 2M8PA 3LRYA 1VQ9P 3CCEP 4XFXA 1IUQA 1KD1Q 1M74A 3I55P 3B4QA 1VQ5P 4XRQA 2DNWA 2GDWA 1NQ4A 1YJWP 2ERHA 1DNYA 2CQ8A 5KP7B 4DG9A 1YJNP 2LIWA 1JJ2O 3GZLA 1BAJA 2KGCA 1E6JP 1KC8Q 2M8NA 1UNKA 2ONTA 4F37A 2K93A 2VLNA 2AF8A 4GR2A 3G1GA 1A43A 5HGMA 3G1IA 3DS5A 2KG9A 3G4SP 4H2WC 2OTJP 2NO8A 2FADA 5BS2A 3RG6C 2XV6A 1K73Q 2LF4A 4PXHB 2LMLA 2FQ1A 1A8OA 2L4BA 4U0DA 2N6ZA 1YHQP 2K92A 3NTEA 5HGNA 1W2BO 1Q81Q 4U0FA 2KGAA 3M1MA 4M0IA 3CC7P 1EMVA 2PEQA 1Q86Q 3U43A 4U0CA 3CMAP 3CCRP 2K0DX 1X3OA 1NJIQ 1VQKP 3G0VA 2KWLA 2M8LA 4COPA 2OTLP 3B5IA 2QEXP 2MF4A 2MR8A 1Q7YQ 2EFJA 2L6EA 2M5RA 2GYKA 1GXGA 2JU1A 5F2OA 2GDYA 1VKUA 3G29A 2Z44A 2LIUA 4CA3A 3CC2P 3EJDA 3MGEA 3CXCO 1ZMBA 5CZDB 3DPHA 3Q20A 1M90Q 1DV5A 1QRJA 1N8RQ 3H0DA 2KOOA 3CMEP 3CCUP 1AF8A 1VQNP 1ZNVA 7CEIA 2VLOA 2K5XA 1BXIA 2FHSC 1VHNA 2MVVA 1RO2A 3EJBA 1HQBA 2VSQA 1YIJP 2QA4P 1S72P 4PWVB 2JB0A 1QVFO 2KOQA 1VQLP 4NEOA 1T8KA 3EJEA 2OARA 4BPGA 1AYIA 2L22A 4XROA 1EOQA 2CNRA 4PH0A 2EHSA 5EW5E 5DCKA 1OR5A 3I56P 2K2QA 1VQ4P 2FAEA 3HYBA 2JAZA 3CCSP 2VLQA 2JBGA 3CE7A 1IMPA 2PENA 1M6EX 1E0HA 2L9FA 2Z46A 1VQ7P 4COCA 1GXHA 2MR7A 4IZ6A 2KGDA 1VQMP 2MVUA 2WPTA 1RO0A 1YITP 4BPFA 3VRLC 1VQPP 1VQ8P 2X2BA 3G21A 2LTEA 2PEKA 2KOSA 2FQ2A 3DS2A 1AUMA 3G28A 2XT1A 1D1DA 5I4TG 4PH1A 1MZ8A 3HZQA 5KP8B 5F2NA 2EIAA 5HVCA 1F80D 1UJZA 3CCLP 2FVFA 3G6EP 3DS3A 4UHPB 1Q82Q 2ROQA 2GDXA 3H4EA 3CC4P 2N50A 3DS1A 4BPHA 4XFYA 2N6YA 5HGLA 3GZMA 2KW2A 2VLPA 1CEIA 2QNWA 2K0XA 2JO0A 2LOLA 4U0AA 5EJDA 2AFEA 3GJNA 3CD6P 2AVAA 3GKLC 2PEIA 3DTJA 2JQ4A 4QKOA 2CGQA 2EG5A 2K0YA 1ACPA 1M6NA 3OW2O 2Z45A 1FR2A 2EHTA 5BS1A 2PEJA 1EIAA 2FVEA 1KQSO 1YJ9P 3LMOA
chains in the Genus database with same CATH topology
1NJIQ 1VQKP 2Z46A 1VQOP 1YI2P 3G0VA 2M8LA 4COCA 4COPA 1M1KQ 1VQ7P 5HGOA 2OTLP 4WYMA 3B5IA 3G26A 2QEXP 2PY8A 2E1MA 5JPAA 1K8AQ 1RNIA 1VQMP 2JYLA 2DGYA 1Q7YQ 2EFJA 1K9MQ 2PEMA 2L6EA 1RO0A 3CPWO 2M8PA 1YITP 3LRYA 4IPYA 1VQ9P 3VRLC 1QVGO 3CCEP 4XFXA 5F2OA 1IUQA 1KD1Q 3G29A 1VQPP 2Z44A 1M74A 1VQ8P 3I55P 3CC2P 3G21A 3P05A 1VQ5P 4XRQA 3MGEA 3CXCO 1ZMBA 2PEKA 3E2DA 1YJWP 4XFZA 3CCJP 3DS2A 1AUMA 3G28A 2XT1A 1D1DA 1YJNP 3DPHA 3Q20A 5I4TG 1JJ2O 1BAJA 4PH1A 1M90Q 4U0BA 1E6JP 3HZQA 5F2NA 2M8NA 1KC8Q 2EIAA 3G71P 2ONTA 1QRJA 1N8RQ 3H0DA 3CMEP 3CCUP 1VQNP 3CCLP 4U0EA 4GR2A 3G6EP 3DS3A 3H47A 5F2KA 3G1GA 1A43A 1Q82Q 2JYGA 3CC4P 3H4EA 5HGMA 1RO2A 3DS4A 3DS1A 3G1IA 3DS5A 1YIJP 3G4SP 2QA4P 4XFYA 1S72P 5HGLA 2OTJP 2KODA 1QVFO 5BS2A 3RG6C 2XV6A 2JO0A 1VQLP 2PEOA 4U0AA 1K73Q 2LF4A 3CCVP 1A8OA 2P9XA 2OARA 3CD6P 2CWOA 1VQ6P 4U0DA 2PEIA 4XROA 1EOQA 3DTJA 1YHQP 4PH0A 3CCQP 2XXMA 3WBHA 5DCKA 2EG5A 3NTEA 5HGNA 3I56P 1W2BO 1Q81Q 1VQ4P 3DS0A 1K30A 3HYBA 4QNBA 1M6NA 4U0FA 3OW2O 3CCSP 2Z45A 3M1MA 2BHVA 4M0IA 3CC7P 4GR6A 5BS1A 2BUOA 2PEJA 2PEQA 1Q86Q 1EIAA 2PENA 1KQSO 3CCMP 4U0CA 3CMAP 1M6EX 1YJ9P 3CCRP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G21 A;  3H47 A;  3P05 A;  3G1G A;  4XRQ A;  3MGE A;  1A43 A;  4U0D A;  2JYG A;  3G0V A;  4XRO A;  2M8L A;  4COC A;  3H4E A;  4COP A;  1EOQ A;  5HGM A;  3DTJ A;  4XFZ A;  5HGO A;  4WYM A;  4PH0 A;  3DS4 A;  3DS2 A;  3G26 A;  1AUM A;  3G28 A;  2XXM A;  2XT1 A;  3DS1 A;  5DCK A;  3G1I A;  3DS5 A;  3NTE A;  5HGN A;  5JPA A;  1D1D A;  4XFY A;  3DPH A;  3DS0 A;  5I4T G;  2JYL A;  4QNB A;  1BAJ A;  4U0F A;  5HGL A;  4PH1 A;  4U0B A;  1E6J P;  2L6E A;  2M8P A;  2M8N A;  3LRY A;  2EIA A;  2KOD A;  4IPY A;  4M0I A;  2ONT A;  3VRL C;  1QRJ A;  2XV6 A;  2BUO A;  2JO0 A;  4XFX A;  1EIA A;  4U0A A;  3G29 A;  2LF4 A;  4U0C A;  1A8O A;  4U0E A;  3DS3 A; 
#chains in the Genus database with same CATH topology
 2MY5 A;  2KOR A;  1VQO P;  1YI2 P;  2LL8 A;  4WYM A;  3G26 A;  5JPA A;  1K8A Q;  1RNI A;  3RG2 A;  2K94 A;  2JYL A;  2DGY A;  2GZJ A;  2PEM A;  3CPW O;  2LPK A;  4IPY A;  3NY7 B;  1QVG O;  2FQ0 A;  3P05 A;  4H2Y C;  3E2D A;  4XFZ A;  3CCJ P;  5HV8 A;  4U0B A;  3G71 P;  2GZF A;  2GZE A;  4U0E A;  4HKG A;  3H47 A;  5F2K A;  4R0M A;  2JYG A;  3DS4 A;  2KR5 A;  1GPJ A;  2KOD A;  2L0Q A;  2PEO A;  2KG6 A;  2GZG A;  3CCV P;  2P9X A;  2LKI A;  2PNG A;  4H2X C;  1L0H A;  2CWO A;  1VQ6 P;  2AFD A;  2KOP A;  3CCQ P;  2XXM A;  3WBH A;  2KGE A;  1KLP A;  2FAC A;  1K30 A;  3DS0 A;  4QNB A;  2JU2 A;  4MRT C;  1IMQ A;  2BHV A;  5KP6 B;  4GR6 A;  2JGP A;  2BUO A;  2CG5 B;  1L0I A;  3CCM P;  1HY8 A;  1Z6M A;  2MD9 A;  1M1K Q;  2N98 A;  5HGO A;  2GZI A;  2XZ0 D;  2PY8 A;  2E1M A;  2N5H A;  2N5I A;  2XZ1 C;  2FVA A;  2KG8 A;  1K9M Q;  2M8P A;  3LRY A;  1VQ9 P;  3CCE P;  4XFX A;  1IUQ A;  1KD1 Q;  1M74 A;  3I55 P;  3B4Q A;  1VQ5 P;  4XRQ A;  2DNW A;  2GDW A;  1NQ4 A;  1YJW P;  2ERH A;  1DNY A;  2CQ8 A;  5KP7 B;  4DG9 A;  1YJN P;  2LIW A;  1JJ2 O;  3GZL A;  1BAJ A;  2KGC A;  1E6J P;  1KC8 Q;  2M8N A;  1UNK A;  2ONT A;  4F37 A;  2K93 A;  2VLN A;  2AF8 A;  4GR2 A;  3G1G A;  1A43 A;  5HGM A;  3G1I A;  3DS5 A;  2KG9 A;  3G4S P;  4H2W C;  2OTJ P;  2NO8 A;  2FAD A;  5BS2 A;  3RG6 C;  2XV6 A;  1K73 Q;  2LF4 A;  4PXH B;  2LML A;  2FQ1 A;  1A8O A;  2L4B A;  4U0D A;  2N6Z A;  1YHQ P;  2K92 A;  3NTE A;  5HGN A;  1W2B O;  1Q81 Q;  4U0F A;  2KGA A;  3M1M A;  4M0I A;  3CC7 P;  1EMV A;  2PEQ A;  1Q86 Q;  3U43 A;  4U0C A;  3CMA P;  3CCR P;  2K0D X;  1X3O A;  1NJI Q;  1VQK P;  3G0V A;  2KWL A;  2M8L A;  4COP A;  2OTL P;  3B5I A;  2QEX P;  2MF4 A;  2MR8 A;  1Q7Y Q;  2EFJ A;  2L6E A;  2M5R A;  2GYK A;  1GXG A;  2JU1 A;  5F2O A;  2GDY A;  1VKU A;  3G29 A;  2Z44 A;  2LIU A;  4CA3 A;  3CC2 P;  3EJD A;  3MGE A;  3CXC O;  1ZMB A;  5CZD B;  3DPH A;  3Q20 A;  1M90 Q;  1DV5 A;  1QRJ A;  1N8R Q;  3H0D A;  2KOO A;  3CME P;  3CCU P;  1AF8 A;  1VQN P;  1ZNV A;  7CEI A;  2VLO A;  2K5X A;  1BXI A;  2FHS C;  1VHN A;  2MVV A;  1RO2 A;  3EJB A;  1HQB A;  2VSQ A;  1YIJ P;  2QA4 P;  1S72 P;  4PWV B;  2JB0 A;  1QVF O;  2KOQ A;  1VQL P;  4NEO A;  1T8K A;  3EJE A;  2OAR A;  4BPG A;  1AYI A;  2L22 A;  4XRO A;  1EOQ A;  2CNR A;  4PH0 A;  2EHS A;  5EW5 E;  5DCK A;  1OR5 A;  3I56 P;  2K2Q A;  1VQ4 P;  2FAE A;  3HYB A;  2JAZ A;  3CCS P;  2VLQ A;  2JBG A;  3CE7 A;  1IMP A;  2PEN A;  1M6E X;  1E0H A;  2L9F A;  2Z46 A;  1VQ7 P;  4COC A;  1GXH A;  2MR7 A;  4IZ6 A;  2KGD A;  1VQM P;  2MVU A;  2WPT A;  1RO0 A;  1YIT P;  4BPF A;  3VRL C;  1VQP P;  1VQ8 P;  2X2B A;  3G21 A;  2LTE A;  2PEK A;  2KOS A;  2FQ2 A;  3DS2 A;  1AUM A;  3G28 A;  2XT1 A;  1D1D A;  5I4T G;  4PH1 A;  1MZ8 A;  3HZQ A;  5KP8 B;  5F2N A;  2EIA A;  5HVC A;  1F80 D;  1UJZ A;  3CCL P;  2FVF A;  3G6E P;  3DS3 A;  4UHP B;  1Q82 Q;  2ROQ A;  2GDX A;  3H4E A;  3CC4 P;  2N50 A;  3DS1 A;  4BPH A;  4XFY A;  2N6Y A;  5HGL A;  3GZM A;  2KW2 A;  2VLP A;  1CEI A;  2QNW A;  2K0X A;  2JO0 A;  2LOL A;  4U0A A;  5EJD A;  2AFE A;  3GJN A;  3CD6 P;  2AVA A;  3GKL C;  2PEI A;  3DTJ A;  2JQ4 A;  4QKO A;  2CGQ A;  2EG5 A;  2K0Y A;  1ACP A;  1M6N A;  3OW2 O;  2Z45 A;  1FR2 A;  2EHT A;  5BS1 A;  2PEJ A;  1EIA A;  2FVE A;  1KQS O;  1YJ9 P;  3LMO A; 
#chains in the Genus database with same CATH homology
 1NJI Q;  1VQK P;  2Z46 A;  1VQO P;  1YI2 P;  3G0V A;  2M8L A;  4COC A;  4COP A;  1M1K Q;  1VQ7 P;  5HGO A;  2OTL P;  4WYM A;  3B5I A;  3G26 A;  2QEX P;  2PY8 A;  2E1M A;  5JPA A;  1K8A Q;  1RNI A;  1VQM P;  2JYL A;  2DGY A;  1Q7Y Q;  2EFJ A;  1K9M Q;  2PEM A;  2L6E A;  1RO0 A;  3CPW O;  2M8P A;  1YIT P;  3LRY A;  4IPY A;  1VQ9 P;  3VRL C;  1QVG O;  3CCE P;  4XFX A;  5F2O A;  1IUQ A;  1KD1 Q;  3G29 A;  1VQP P;  2Z44 A;  1M74 A;  1VQ8 P;  3I55 P;  3CC2 P;  3G21 A;  3P05 A;  1VQ5 P;  4XRQ A;  3MGE A;  3CXC O;  1ZMB A;  2PEK A;  3E2D A;  1YJW P;  4XFZ A;  3CCJ P;  3DS2 A;  1AUM A;  3G28 A;  2XT1 A;  1D1D A;  1YJN P;  3DPH A;  3Q20 A;  5I4T G;  1JJ2 O;  1BAJ A;  4PH1 A;  1M90 Q;  4U0B A;  1E6J P;  3HZQ A;  5F2N A;  2M8N A;  1KC8 Q;  2EIA A;  3G71 P;  2ONT A;  1QRJ A;  1N8R Q;  3H0D A;  3CME P;  3CCU P;  1VQN P;  3CCL P;  4U0E A;  4GR2 A;  3G6E P;  3DS3 A;  3H47 A;  5F2K A;  3G1G A;  1A43 A;  1Q82 Q;  2JYG A;  3CC4 P;  3H4E A;  5HGM A;  1RO2 A;  3DS4 A;  3DS1 A;  3G1I A;  3DS5 A;  1YIJ P;  3G4S P;  2QA4 P;  4XFY A;  1S72 P;  5HGL A;  2OTJ P;  2KOD A;  1QVF O;  5BS2 A;  3RG6 C;  2XV6 A;  2JO0 A;  1VQL P;  2PEO A;  4U0A A;  1K73 Q;  2LF4 A;  3CCV P;  1A8O A;  2P9X A;  2OAR A;  3CD6 P;  2CWO A;  1VQ6 P;  4U0D A;  2PEI A;  4XRO A;  1EOQ A;  3DTJ A;  1YHQ P;  4PH0 A;  3CCQ P;  2XXM A;  3WBH A;  5DCK A;  2EG5 A;  3NTE A;  5HGN A;  3I56 P;  1W2B O;  1Q81 Q;  1VQ4 P;  3DS0 A;  1K30 A;  3HYB A;  4QNB A;  1M6N A;  4U0F A;  3OW2 O;  3CCS P;  2Z45 A;  3M1M A;  2BHV A;  4M0I A;  3CC7 P;  4GR6 A;  5BS1 A;  2BUO A;  2PEJ A;  2PEQ A;  1Q86 Q;  1EIA A;  2PEN A;  1KQS O;  3CCM P;  4U0C A;  3CMA P;  1M6E X;  1YJ9 P;  3CCR P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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