7CEI | Genus

Total Genus 28

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	87
structure length	87
Chain Sequence	MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Escherichia coli str. k12 substr.
publication title	The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. pubmed doi rcsb
molecule keywords	PROTEIN (COLICIN E7 IMMUNITY PROTEIN)
total genus	28
structure length	87
sequence length	87
ec nomenclature
pdb deposition date	1998-09-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01320	Colicin_Pyocin	Colicin immunity protein / pyocin immunity protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.20	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	Colicin E immunity protein	7ceiA00

3U43A 1ZNVA 2VLOA 2VLPA 2WPTA 4F37A 1BXIA 1UJZA 2VLQA 1CEIA 2GYKA 2VLNA 2GZEA 2JB0A 5EW5E 4QKOA 1E0HA 1AYIA 7CEIA 2GZFA 3GKLC 1MZ8A 1FR2A 2GZJA 1IMQA 2JBGA 3GJNA 1IMPA 2K0DX 2JAZA 1GXGA 2K5XA 1GXHA 1EMVA 2NO8A 2ERHA 4UHPB 2GZGA 1UNKA 2GZIA
chains in the Genus database with same CATH superfamily

5HGOA 3G71P 4HKGA 2VLPA 4XROA 4GR2A 3HYBA 1N8RQ 3CC7P 1VKUA 4BPFA 1IMQA 1QVGO 5DCKA 3G21A 2CG5B 1A8OA 2FAEA 3WBHA 3G1GA 2KR5A 3E2DA 3U43A 2WPTA 3CXCO 1BXIA 2EFJA 2N5IA 1VQ6P 2KGEA 2FQ1A 4U0CA 2XZ1C 2K92A 2QA4P 1Q86Q 1AF8A 5F2OA 2NO8A 1OR5A 3CE7A 4U0EA 3CCVP 2KGAA 4PWVB 2JGPA 2EG5A 2FACA 4IPYA 3H0DA 1MZ8A 2KOOA 4U0FA 2DNWA 3GJNA 4COPA 2XXMA 5HV8A 2K5XA 1VQKP 1EMVA 4UHPB 2AF8A 1T8KA 1K73Q 3G28A 1UNKA 1HQBA 3B4QA 1AUMA 1VQ4P 2XZ0D 2VLOA 3CCSP 1NJIQ 2VLQA 4U0DA 1W2BO 1L0HA 3I56P 4BPGA 4QKOA 1Q7YQ 1YJWP 3EJEA 2N6ZA 2L6EA 5HGLA 2N50A 5EJDA 2K0DX 2L22A 1QVFO 3GZMA 2CQ8A 2FVFA 2CWOA 3H4EA 5F2KA 2Z45A 4XFYA 2GZEA 2JB0A 4XFXA 3CCEP 1VQNP 3CCUP 3CCRP 1FR2A 2MY5A 5HVCA 5HGNA 4U0BA 1IMPA 3G26A 2PEMA 3LRYA 2KORA 2P9XA 3P05A 2PEOA 3DS0A 2KOQA 2Z46A 3Q20A 2M8NA 2K94A 2M5RA 1EOQA 2AFEA 4DG9A 2M8PA 3RG6C 3I55P 2FHSC 2VSQA 1KC8Q 1S72P 2GDWA 2E1MA 2AVAA 3GZLA 2M8LA 2JYLA 2MR7A 2AFDA 3DS5A 1K9MQ 1EIAA 4U0AA 2LF4A 2JU1A 4H2WC 4PH0A 1VQLP 2JYGA 2LTEA 3G29A 2N6YA 4WYMA 2LIUA 2L4BA 1RO2A 2MD9A 3NY7B 3G4SP 1YITP 1BAJA 2ONTA 4H2XC 2KG8A 5BS1A 5BS2A 1M6EX 2FADA 1VQMP 1K30A 1ZMBA 1YIJP 3DS4A 5CZDB 4XFZA 5KP8B 2LKIA 2K0YA 4GR6A 1VQPP 2JBGA 2LL8A 2XV6A 2JAZA 2OARA 3CC2P 3G0VA 2LOLA 2LIWA 2MVUA 2KODA 4MRTC 1ZNVA 2BUOA 2KGCA 2N98A 2PY8A 2XT1A 1CEIA 2QNWA 3DS1A 4COCA 5F2NA 7CEIA 1QRJA 2GZFA 4PH1A 1X3OA 4IZ6A 3HZQA 1KD1Q 1HY8A 1Q82Q 1VHNA 1VQ7P 2BHVA 2JQ4A 3CMEP 1YHQP 2X2BA 1UJZA 2MVVA 3CCLP 2PEIA 2LMLA 3CMAP 4R0MA 2GZJA 2K93A 1K8AQ 1DNYA 5I4TG 2JO0A 1RNIA 2N5HA 2OTLP 1VQ8P 3MGEA 4M0IA 1Q81Q 2GZIA 2K0XA 1YJ9P 1Z6MA 4PXHB 3NTEA 1L0IA 3DS2A 3B5IA 1GPJA 2EIAA 2GDXA 3CPWO 2ERHA 1NQ4A 2GZGA 4NEOA 2MR8A 3CCQP 2JU2A 2EHTA 2K2QA 3EJBA 1E6JP 3DPHA 1KLPA 4XRQA 1AYIA 2LPKA 5KP6B 3CCMP 2CGQA 3RG2A 2PENA 3VRLC 2FVEA 2OTJP 2MF4A 1VQ5P 3CC4P 1VQOP 2DGYA 2FQ0A 2PNGA 2EHSA 5EW5E 1IUQA 3LMOA 3OW2O 2L0QA 2PEKA 3G6EP 2VLNA 2PEJA 3M1MA 3GKLC 2KG6A 2L9FA 3G1IA 1M90Q 3CD6P 1GXGA 2KOSA 3H47A 4H2YC 1ACPA 4BPHA 3CCJP 1DV5A 1VQ9P 3DTJA 2KWLA 2GYKA 2ROQA 1E0HA 1D1DA 2KOPA 3DS3A 1RO0A 2KW2A 4QNBA 1M1KQ 1YJNP 5KP7B 1JJ2O 2FQ2A 2PEQA 1F80D 1M6NA 4F37A 3EJDA 2Z44A 2KGDA 2CNRA 2KG9A 1YI2P 2QEXP 4CA3A 1M74A 1GXHA 2FVAA 2GDYA 1A43A 5JPAA 1KQSO 5HGMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3U43 A;  1ZNV A;  2VLO A;  2VLP A;  2WPT A;  4F37 A;  1BXI A;  1UJZ A;  2VLQ A;  1CEI A;  2GYK A;  2VLN A;  2GZE A;  2JB0 A;  5EW5 E;  4QKO A;  1E0H A;  1AYI A;  7CEI A;  2GZF A;  3GKL C;  1MZ8 A;  1FR2 A;  2GZJ A;  1IMQ A;  2JBG A;  3GJN A;  1IMP A;  2K0D X;  2JAZ A;  1GXG A;  2K5X A;  1GXH A;  1EMV A;  2NO8 A;  2ERH A;  4UHP B;  2GZG A;  1UNK A;  2GZI A; 
#chains in the Genus database with same CATH topology
 5HGO A;  3G71 P;  4HKG A;  2VLP A;  4XRO A;  4GR2 A;  3HYB A;  1N8R Q;  3CC7 P;  1VKU A;  4BPF A;  1IMQ A;  1QVG O;  5DCK A;  3G21 A;  2CG5 B;  1A8O A;  2FAE A;  3WBH A;  3G1G A;  2KR5 A;  3E2D A;  3U43 A;  2WPT A;  3CXC O;  1BXI A;  2EFJ A;  2N5I A;  1VQ6 P;  2KGE A;  2FQ1 A;  4U0C A;  2XZ1 C;  2K92 A;  2QA4 P;  1Q86 Q;  1AF8 A;  5F2O A;  2NO8 A;  1OR5 A;  3CE7 A;  4U0E A;  3CCV P;  2KGA A;  4PWV B;  2JGP A;  2EG5 A;  2FAC A;  4IPY A;  3H0D A;  1MZ8 A;  2KOO A;  4U0F A;  2DNW A;  3GJN A;  4COP A;  2XXM A;  5HV8 A;  2K5X A;  1VQK P;  1EMV A;  4UHP B;  2AF8 A;  1T8K A;  1K73 Q;  3G28 A;  1UNK A;  1HQB A;  3B4Q A;  1AUM A;  1VQ4 P;  2XZ0 D;  2VLO A;  3CCS P;  1NJI Q;  2VLQ A;  4U0D A;  1W2B O;  1L0H A;  3I56 P;  4BPG A;  4QKO A;  1Q7Y Q;  1YJW P;  3EJE A;  2N6Z A;  2L6E A;  5HGL A;  2N50 A;  5EJD A;  2K0D X;  2L22 A;  1QVF O;  3GZM A;  2CQ8 A;  2FVF A;  2CWO A;  3H4E A;  5F2K A;  2Z45 A;  4XFY A;  2GZE A;  2JB0 A;  4XFX A;  3CCE P;  1VQN P;  3CCU P;  3CCR P;  1FR2 A;  2MY5 A;  5HVC A;  5HGN A;  4U0B A;  1IMP A;  3G26 A;  2PEM A;  3LRY A;  2KOR A;  2P9X A;  3P05 A;  2PEO A;  3DS0 A;  2KOQ A;  2Z46 A;  3Q20 A;  2M8N A;  2K94 A;  2M5R A;  1EOQ A;  2AFE A;  4DG9 A;  2M8P A;  3RG6 C;  3I55 P;  2FHS C;  2VSQ A;  1KC8 Q;  1S72 P;  2GDW A;  2E1M A;  2AVA A;  3GZL A;  2M8L A;  2JYL A;  2MR7 A;  2AFD A;  3DS5 A;  1K9M Q;  1EIA A;  4U0A A;  2LF4 A;  2JU1 A;  4H2W C;  4PH0 A;  1VQL P;  2JYG A;  2LTE A;  3G29 A;  2N6Y A;  4WYM A;  2LIU A;  2L4B A;  1RO2 A;  2MD9 A;  3NY7 B;  3G4S P;  1YIT P;  1BAJ A;  2ONT A;  4H2X C;  2KG8 A;  5BS1 A;  5BS2 A;  1M6E X;  2FAD A;  1VQM P;  1K30 A;  1ZMB A;  1YIJ P;  3DS4 A;  5CZD B;  4XFZ A;  5KP8 B;  2LKI A;  2K0Y A;  4GR6 A;  1VQP P;  2JBG A;  2LL8 A;  2XV6 A;  2JAZ A;  2OAR A;  3CC2 P;  3G0V A;  2LOL A;  2LIW A;  2MVU A;  2KOD A;  4MRT C;  1ZNV A;  2BUO A;  2KGC A;  2N98 A;  2PY8 A;  2XT1 A;  1CEI A;  2QNW A;  3DS1 A;  4COC A;  5F2N A;  7CEI A;  1QRJ A;  2GZF A;  4PH1 A;  1X3O A;  4IZ6 A;  3HZQ A;  1KD1 Q;  1HY8 A;  1Q82 Q;  1VHN A;  1VQ7 P;  2BHV A;  2JQ4 A;  3CME P;  1YHQ P;  2X2B A;  1UJZ A;  2MVV A;  3CCL P;  2PEI A;  2LML A;  3CMA P;  4R0M A;  2GZJ A;  2K93 A;  1K8A Q;  1DNY A;  5I4T G;  2JO0 A;  1RNI A;  2N5H A;  2OTL P;  1VQ8 P;  3MGE A;  4M0I A;  1Q81 Q;  2GZI A;  2K0X A;  1YJ9 P;  1Z6M A;  4PXH B;  3NTE A;  1L0I A;  3DS2 A;  3B5I A;  1GPJ A;  2EIA A;  2GDX A;  3CPW O;  2ERH A;  1NQ4 A;  2GZG A;  4NEO A;  2MR8 A;  3CCQ P;  2JU2 A;  2EHT A;  2K2Q A;  3EJB A;  1E6J P;  3DPH A;  1KLP A;  4XRQ A;  1AYI A;  2LPK A;  5KP6 B;  3CCM P;  2CGQ A;  3RG2 A;  2PEN A;  3VRL C;  2FVE A;  2OTJ P;  2MF4 A;  1VQ5 P;  3CC4 P;  1VQO P;  2DGY A;  2FQ0 A;  2PNG A;  2EHS A;  5EW5 E;  1IUQ A;  3LMO A;  3OW2 O;  2L0Q A;  2PEK A;  3G6E P;  2VLN A;  2PEJ A;  3M1M A;  3GKL C;  2KG6 A;  2L9F A;  3G1I A;  1M90 Q;  3CD6 P;  1GXG A;  2KOS A;  3H47 A;  4H2Y C;  1ACP A;  4BPH A;  3CCJ P;  1DV5 A;  1VQ9 P;  3DTJ A;  2KWL A;  2GYK A;  2ROQ A;  1E0H A;  1D1D A;  2KOP A;  3DS3 A;  1RO0 A;  2KW2 A;  4QNB A;  1M1K Q;  1YJN P;  5KP7 B;  1JJ2 O;  2FQ2 A;  2PEQ A;  1F80 D;  1M6N A;  4F37 A;  3EJD A;  2Z44 A;  2KGD A;  2CNR A;  2KG9 A;  1YI2 P;  2QEX P;  4CA3 A;  1M74 A;  1GXH A;  2FVA A;  2GDY A;  1A43 A;  5JPA A;  1KQS O;  5HGM A; 
#chains in the Genus database with same CATH homology
 3U43 A;  1ZNV A;  2VLO A;  2VLP A;  2WPT A;  4F37 A;  1BXI A;  1UJZ A;  2VLQ A;  1CEI A;  2GYK A;  2VLN A;  2GZE A;  2JB0 A;  5EW5 E;  4QKO A;  1E0H A;  1AYI A;  7CEI A;  2GZF A;  3GKL C;  1MZ8 A;  1FR2 A;  2GZJ A;  1IMQ A;  2JBG A;  3GJN A;  1IMP A;  2K0D X;  2JAZ A;  1GXG A;  2K5X A;  1GXH A;  1EMV A;  2NO8 A;  2ERH A;  4UHP B;  2GZG A;  1UNK A;  2GZI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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7CEIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations