1JJ2 | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	143
structure length	143
Chain Sequence	TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	The kink-turn: a new RNA secondary structure motif. pubmed doi rcsb
molecule keywords	23S RRNA
total genus	47
structure length	143
sequence length	143
ec nomenclature
pdb deposition date	2001-07-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
O	PF01280	Ribosomal_L19e	Ribosomal protein L19e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1200.60	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	1jj2O02
1.10.1650.10	Mainly Alpha	Orthogonal Bundle	50s Ribosomal Protein L19e, Chain O, domain 1	50s Ribosomal Protein L19e, Chain O, domain 1	1jj2O01

1YJWP 3CCRP 1Q81Q 1YJ9P 1KC8Q 3CCLP 3CCMP 3I55P 1KQSO 1Q86Q 1Q82Q 3CMAP 1YJNP 1YHQP 1M1KQ 1VQ5P 1QVFO 3I56P 2OTJP 2OTLP 1NJIQ 1YI2P 3G4SP 3OW2O 1YIJP 3CCQP 1VQPP 1VQNP 1VQKP 3CCSP 1KD1Q 1VQ7P 1M90Q 3CCUP 1K8AQ 1VQ4P 3CD6P 3CPWO 2QEXP 1VQ6P 1S72P 3CCEP 1VQ8P 2QA4P 3CXCO 1VQOP 1N8RQ 1VQLP 3CC4P 1YITP 3CC2P 1W2BO 1K73Q 3CC7P 1K9MQ 3CCJP 3CCVP 3CMEP 1VQMP 1Q7YQ 1VQ9P 3G6EP 1QVGO 3G71P 1JJ2O
chains in the Genus database with same CATH superfamily

4H2XC 2CGQA 2KGAA 3I55P 2QNWA 5DCKA 4M0IA 3DS3A 3DS2A 1M90Q 4NEOA 1BXIA 2KGEA 1N8RQ 3RG2A 3B5IA 1HY8A 1ZMBA 1Q7YQ 1M6EX 4F37A 2LOLA 1YJWP 3CCRP 1Q81Q 2FHSC 2XZ1C 3H47A 1VQ5P 3I56P 2PEKA 2AVAA 4WYMA 1VQ6P 4COPA 2VLNA 3GZMA 2KOSA 1RNIA 4GR2A 3G71P 5EW5E 5KP8B 2K0XA 1YJNP 3LMOA 2FQ2A 5BS2A 1YIJP 3E2DA 1GXHA 5KP6B 2KOOA 2L22A 4UHPB 2AFEA 2N6YA 4XFYA 4GR6A 1IMPA 1K73Q 2KOPA 3CMEP 2PEOA 1L0IA 2FAEA 2M8NA 1K9MQ 3CCLP 5BS1A 1AUMA 5HGNA 2JO0A 2DGYA 1E6JP 2KGDA 3CCSP 1T8KA 4QKOA 1S72P 2MR8A 2K5XA 2VLOA 2MVUA 2JAZA 2BHVA 1K30A 2KG6A 2PEIA 3OW2O 2KG9A 3GZLA 1VQPP 1VQNP 3DS5A 7CEIA 3NY7B 2CG5B 2QEXP 1VQ8P 4IZ6A 3WBHA 1A43A 2JYGA 2CNRA 2OARA 1Z6MA 1UJZA 2GZJA 2JB0A 2M8LA 1QVFO 2JBGA 4XROA 2XV6A 3HZQA 5CZDB 3G4SP 2AFDA 2LMLA 4U0AA 4CA3A 2PY8A 1VQLP 3CC4P 1YITP 4U0DA 4MRTC 4PWVB 2K2QA 1QVGO 2GDXA 2M8PA 2Z46A 2Z44A 4U0FA 5F2NA 1M1KQ 2KWLA 4H2WC 2CWOA 4PH0A 1KD1Q 2KR5A 3CCUP 1K8AQ 1AF8A 2FADA 3DPHA 3CXCO 1ACPA 1NQ4A 3G6EP 1IUQA 1YJ9P 1M6NA 3CCMP 2M5RA 1EOQA 2MD9A 1NJIQ 2AF8A 3DS4A 3M1MA 3VRLC 2GZGA 3CC2P 2LPKA 3G1GA 1W2BO 2JQ4A 2PEJA 2LIUA 2N6ZA 1VQ9P 2JGPA 4BPHA 1HQBA 1PEMA 1KLPA 2KG8A 3G26A 3U43A 2MF4A 3CE7A 1GPJA 4H2YC 1ZNVA 2EHTA 2CQ8A 3GJNA 2XZ0D 2GDWA 2QA4P 2ONTA 4IPYA 2KORA 2ROQA 4BPGA 3CCJP 3CCVP 2EFJA 3MGEA 3HYBA 5I4TG 3G1IA 1JJ2O 3CC7P 3DS1A 2BQ1E 1A8OA 2JU1A 2GZIA 2ERHA 2K94A 3H4EA 2EIAA 5JPAA 4DG9A 1VKUA 1EMVA 3EJDA 2MVVA 4R0MA 2N5IA 5HGMA 2K0YA 4PXHB 2KODA 2Z45A 2E1MA 2PEQA 2LTEA 1Q86Q 3RG6C 1BAJA 1Q82Q 4HKGA 4BPFA 3NTEA 2MR7A 2LKIA 2MY5A 1VQ4P 1PEUA 3CPWO 3H0DA 1VQOP 1DNYA 3G21A 2KOQA 2VLQA 2K92A 2DNWA 1PEQA 2FQ1A 5F2KA 1AYIA 1X3OA 3G0VA 1VQKP 3DS0A 3CD6P 2FACA 2JU2A 2LL8A 5HGLA 1KC8Q 1KQSO 2GYKA 2GZFA 2OTJP 1D1DA 1UNKA 1QRJA 2L9FA 2XXMA 2FVEA 4PH1A 1DV5A 2LIWA 5F2OA 5HV8A 4U0BA 1OR5A 1CEIA 1PEOA 2EHSA 2GZEA 3DTJA 4U0CA 1EIAA 2X2BA 3B4QA 3LRYA 3EJEA 2K93A 2PNGA 2PEMA 2KGCA 2N98A 2KW2A 3G28A 1VQ7P 4XRQA 2PENA 4XFXA 2N5HA 2GDYA 5HVCA 2NO8A 2L6EA 1VQMP 2N50A 1RO0A 5HGOA 2FVAA 4QNBA 4U0EA 1VHNA 1L0HA 2K0DX 1RO2A 3Q20A 1FR2A 4COCA 5EJDA 2VLPA 1E0HA 1GXGA 2FQ0A 2VSQA 3CCEP 2L4BA 2XT1A 1M74A 2LF4A 3GKLC 5KP7B 2EG5A 1F80D 2WPTA 3CMAP 1YHQP 2OTLP 2JYLA 2P9XA 1YI2P 1MZ8A 3CCQP 1IMQA 2L0QA 3P05A 3G29A 4XFZA 2BUOA 2FVFA 3EJBA
chains in the Genus database with same CATH topology

5HGLA 1KC8Q 2BHVA 3I55P 1KQSO 1K30A 1PEMA 2OTJP 1D1DA 5DCKA 2PEIA 4M0IA 3OW2O 3G26A 1VQPP 1VQNP 1QRJA 2XXMA 3DS3A 3DS5A 3DS2A 4PH1A 1M90Q 2QEXP 5F2OA 1VQ8P 2QA4P 2ONTA 1N8RQ 4IPYA 3WBHA 3B5IA 1ZMBA 3CCJP 3CCVP 4U0BA 1A43A 2EFJA 2JYGA 3MGEA 1Q7YQ 3HYBA 5I4TG 1M6EX 1PEOA 3G1IA 1JJ2O 1YJWP 2OARA 3CCRP 1Q81Q 3DS1A 3CC7P 2BQ1E 1A8OA 3DTJA 4U0CA 1EIAA 2M8LA 3H47A 3LRYA 1VQ5P 1QVFO 3I56P 2PEKA 3H4EA 2EIAA 5JPAA 4XROA 2XV6A 3HZQA 3G4SP 2PEMA 4U0AA 3G28A 1VQ7P 2PY8A 4WYMA 1VQ6P 4XRQA 2PENA 4XFXA 5HGMA 4COPA 1VQLP 3CC4P 1YITP 4U0DA 1RNIA 2L6EA 1VQMP 2KODA 4GR2A 2Z45A 1RO0A 3G71P 1QVGO 2E1MA 2PEQA 2M8PA 5HGOA 1Q86Q 2Z46A 3RG6C 1BAJA 1Q82Q 2Z44A 4U0FA 5F2NA 1YJNP 1M1KQ 4QNBA 4U0EA 5BS2A 1YIJP 3NTEA 2CWOA 1RO2A 3E2DA 3Q20A 4COCA 4PH0A 1KD1Q 3CCUP 1K8AQ 1VQ4P 1PEUA 3CPWO 3CCEP 4XFYA 3DPHA 4GR6A 3H0DA 3CXCO 2XT1A 1VQOP 3G21A 1K73Q 1M74A 3CMEP 2LF4A 2PEOA 2M8NA 3G6EP 1PEQA 1K9MQ 1IUQA 1YJ9P 2EG5A 3CCLP 1M6NA 3CCMP 5BS1A 5F2KA 1AUMA 3CMAP 5HGNA 2JO0A 2DGYA 1EOQA 1YHQP 2OTLP 1NJIQ 2JYLA 1E6JP 2P9XA 1YI2P 3DS4A 3CCQP 3G0VA 3M1MA 3VRLC 3CCSP 1VQKP 3DS0A 3P05A 3G29A 3CD6P 1S72P 3CC2P 3G1GA 1W2BO 2PEJA 4XFZA 2BUOA 1VQ9P
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YJW P;  3CCR P;  1Q81 Q;  1YJ9 P;  1KC8 Q;  3CCL P;  3CCM P;  3I55 P;  1KQS O;  1Q86 Q;  1Q82 Q;  3CMA P;  1YJN P;  1YHQ P;  1M1K Q;  1VQ5 P;  1QVF O;  3I56 P;  2OTJ P;  2OTL P;  1NJI Q;  1YI2 P;  3G4S P;  3OW2 O;  1YIJ P;  3CCQ P;  1VQP P;  1VQN P;  1VQK P;  3CCS P;  1KD1 Q;  1VQ7 P;  1M90 Q;  3CCU P;  1K8A Q;  1VQ4 P;  3CD6 P;  3CPW O;  2QEX P;  1VQ6 P;  1S72 P;  3CCE P;  1VQ8 P;  2QA4 P;  3CXC O;  1VQO P;  1N8R Q;  1VQL P;  3CC4 P;  1YIT P;  3CC2 P;  1W2B O;  1K73 Q;  3CC7 P;  1K9M Q;  3CCJ P;  3CCV P;  3CME P;  1VQM P;  1Q7Y Q;  1VQ9 P;  3G6E P;  1QVG O;  3G71 P;  1JJ2 O; 
#chains in the Genus database with same CATH topology
 4H2X C;  2CGQ A;  2KGA A;  3I55 P;  2QNW A;  5DCK A;  4M0I A;  3DS3 A;  3DS2 A;  1M90 Q;  4NEO A;  1BXI A;  2KGE A;  1N8R Q;  3RG2 A;  3B5I A;  1HY8 A;  1ZMB A;  1Q7Y Q;  1M6E X;  4F37 A;  2LOL A;  1YJW P;  3CCR P;  1Q81 Q;  2FHS C;  2XZ1 C;  3H47 A;  1VQ5 P;  3I56 P;  2PEK A;  2AVA A;  4WYM A;  1VQ6 P;  4COP A;  2VLN A;  3GZM A;  2KOS A;  1RNI A;  4GR2 A;  3G71 P;  5EW5 E;  5KP8 B;  2K0X A;  1YJN P;  3LMO A;  2FQ2 A;  5BS2 A;  1YIJ P;  3E2D A;  1GXH A;  5KP6 B;  2KOO A;  2L22 A;  4UHP B;  2AFE A;  2N6Y A;  4XFY A;  4GR6 A;  1IMP A;  1K73 Q;  2KOP A;  3CME P;  2PEO A;  1L0I A;  2FAE A;  2M8N A;  1K9M Q;  3CCL P;  5BS1 A;  1AUM A;  5HGN A;  2JO0 A;  2DGY A;  1E6J P;  2KGD A;  3CCS P;  1T8K A;  4QKO A;  1S72 P;  2MR8 A;  2K5X A;  2VLO A;  2MVU A;  2JAZ A;  2BHV A;  1K30 A;  2KG6 A;  2PEI A;  3OW2 O;  2KG9 A;  3GZL A;  1VQP P;  1VQN P;  3DS5 A;  7CEI A;  3NY7 B;  2CG5 B;  2QEX P;  1VQ8 P;  4IZ6 A;  3WBH A;  1A43 A;  2JYG A;  2CNR A;  2OAR A;  1Z6M A;  1UJZ A;  2GZJ A;  2JB0 A;  2M8L A;  1QVF O;  2JBG A;  4XRO A;  2XV6 A;  3HZQ A;  5CZD B;  3G4S P;  2AFD A;  2LML A;  4U0A A;  4CA3 A;  2PY8 A;  1VQL P;  3CC4 P;  1YIT P;  4U0D A;  4MRT C;  4PWV B;  2K2Q A;  1QVG O;  2GDX A;  2M8P A;  2Z46 A;  2Z44 A;  4U0F A;  5F2N A;  1M1K Q;  2KWL A;  4H2W C;  2CWO A;  4PH0 A;  1KD1 Q;  2KR5 A;  3CCU P;  1K8A Q;  1AF8 A;  2FAD A;  3DPH A;  3CXC O;  1ACP A;  1NQ4 A;  3G6E P;  1IUQ A;  1YJ9 P;  1M6N A;  3CCM P;  2M5R A;  1EOQ A;  2MD9 A;  1NJI Q;  2AF8 A;  3DS4 A;  3M1M A;  3VRL C;  2GZG A;  3CC2 P;  2LPK A;  3G1G A;  1W2B O;  2JQ4 A;  2PEJ A;  2LIU A;  2N6Z A;  1VQ9 P;  2JGP A;  4BPH A;  1HQB A;  1PEM A;  1KLP A;  2KG8 A;  3G26 A;  3U43 A;  2MF4 A;  3CE7 A;  1GPJ A;  4H2Y C;  1ZNV A;  2EHT A;  2CQ8 A;  3GJN A;  2XZ0 D;  2GDW A;  2QA4 P;  2ONT A;  4IPY A;  2KOR A;  2ROQ A;  4BPG A;  3CCJ P;  3CCV P;  2EFJ A;  3MGE A;  3HYB A;  5I4T G;  3G1I A;  1JJ2 O;  3CC7 P;  3DS1 A;  2BQ1 E;  1A8O A;  2JU1 A;  2GZI A;  2ERH A;  2K94 A;  3H4E A;  2EIA A;  5JPA A;  4DG9 A;  1VKU A;  1EMV A;  3EJD A;  2MVV A;  4R0M A;  2N5I A;  5HGM A;  2K0Y A;  4PXH B;  2KOD A;  2Z45 A;  2E1M A;  2PEQ A;  2LTE A;  1Q86 Q;  3RG6 C;  1BAJ A;  1Q82 Q;  4HKG A;  4BPF A;  3NTE A;  2MR7 A;  2LKI A;  2MY5 A;  1VQ4 P;  1PEU A;  3CPW O;  3H0D A;  1VQO P;  1DNY A;  3G21 A;  2KOQ A;  2VLQ A;  2K92 A;  2DNW A;  1PEQ A;  2FQ1 A;  5F2K A;  1AYI A;  1X3O A;  3G0V A;  1VQK P;  3DS0 A;  3CD6 P;  2FAC A;  2JU2 A;  2LL8 A;  5HGL A;  1KC8 Q;  1KQS O;  2GYK A;  2GZF A;  2OTJ P;  1D1D A;  1UNK A;  1QRJ A;  2L9F A;  2XXM A;  2FVE A;  4PH1 A;  1DV5 A;  2LIW A;  5F2O A;  5HV8 A;  4U0B A;  1OR5 A;  1CEI A;  1PEO A;  2EHS A;  2GZE A;  3DTJ A;  4U0C A;  1EIA A;  2X2B A;  3B4Q A;  3LRY A;  3EJE A;  2K93 A;  2PNG A;  2PEM A;  2KGC A;  2N98 A;  2KW2 A;  3G28 A;  1VQ7 P;  4XRQ A;  2PEN A;  4XFX A;  2N5H A;  2GDY A;  5HVC A;  2NO8 A;  2L6E A;  1VQM P;  2N50 A;  1RO0 A;  5HGO A;  2FVA A;  4QNB A;  4U0E A;  1VHN A;  1L0H A;  2K0D X;  1RO2 A;  3Q20 A;  1FR2 A;  4COC A;  5EJD A;  2VLP A;  1E0H A;  1GXG A;  2FQ0 A;  2VSQ A;  3CCE P;  2L4B A;  2XT1 A;  1M74 A;  2LF4 A;  3GKL C;  5KP7 B;  2EG5 A;  1F80 D;  2WPT A;  3CMA P;  1YHQ P;  2OTL P;  2JYL A;  2P9X A;  1YI2 P;  1MZ8 A;  3CCQ P;  1IMQ A;  2L0Q A;  3P05 A;  3G29 A;  4XFZ A;  2BUO A;  2FVF A;  3EJB A; 
#chains in the Genus database with same CATH homology
 5HGL A;  1KC8 Q;  2BHV A;  3I55 P;  1KQS O;  1K30 A;  1PEM A;  2OTJ P;  1D1D A;  5DCK A;  2PEI A;  4M0I A;  3OW2 O;  3G26 A;  1VQP P;  1VQN P;  1QRJ A;  2XXM A;  3DS3 A;  3DS5 A;  3DS2 A;  4PH1 A;  1M90 Q;  2QEX P;  5F2O A;  1VQ8 P;  2QA4 P;  2ONT A;  1N8R Q;  4IPY A;  3WBH A;  3B5I A;  1ZMB A;  3CCJ P;  3CCV P;  4U0B A;  1A43 A;  2EFJ A;  2JYG A;  3MGE A;  1Q7Y Q;  3HYB A;  5I4T G;  1M6E X;  1PEO A;  3G1I A;  1JJ2 O;  1YJW P;  2OAR A;  3CCR P;  1Q81 Q;  3DS1 A;  3CC7 P;  2BQ1 E;  1A8O A;  3DTJ A;  4U0C A;  1EIA A;  2M8L A;  3H47 A;  3LRY A;  1VQ5 P;  1QVF O;  3I56 P;  2PEK A;  3H4E A;  2EIA A;  5JPA A;  4XRO A;  2XV6 A;  3HZQ A;  3G4S P;  2PEM A;  4U0A A;  3G28 A;  1VQ7 P;  2PY8 A;  4WYM A;  1VQ6 P;  4XRQ A;  2PEN A;  4XFX A;  5HGM A;  4COP A;  1VQL P;  3CC4 P;  1YIT P;  4U0D A;  1RNI A;  2L6E A;  1VQM P;  2KOD A;  4GR2 A;  2Z45 A;  1RO0 A;  3G71 P;  1QVG O;  2E1M A;  2PEQ A;  2M8P A;  5HGO A;  1Q86 Q;  2Z46 A;  3RG6 C;  1BAJ A;  1Q82 Q;  2Z44 A;  4U0F A;  5F2N A;  1YJN P;  1M1K Q;  4QNB A;  4U0E A;  5BS2 A;  1YIJ P;  3NTE A;  2CWO A;  1RO2 A;  3E2D A;  3Q20 A;  4COC A;  4PH0 A;  1KD1 Q;  3CCU P;  1K8A Q;  1VQ4 P;  1PEU A;  3CPW O;  3CCE P;  4XFY A;  3DPH A;  4GR6 A;  3H0D A;  3CXC O;  2XT1 A;  1VQO P;  3G21 A;  1K73 Q;  1M74 A;  3CME P;  2LF4 A;  2PEO A;  2M8N A;  3G6E P;  1PEQ A;  1K9M Q;  1IUQ A;  1YJ9 P;  2EG5 A;  3CCL P;  1M6N A;  3CCM P;  5BS1 A;  5F2K A;  1AUM A;  3CMA P;  5HGN A;  2JO0 A;  2DGY A;  1EOQ A;  1YHQ P;  2OTL P;  1NJI Q;  2JYL A;  1E6J P;  2P9X A;  1YI2 P;  3DS4 A;  3CCQ P;  3G0V A;  3M1M A;  3VRL C;  3CCS P;  1VQK P;  3DS0 A;  3P05 A;  3G29 A;  3CD6 P;  1S72 P;  3CC2 P;  3G1G A;  1W2B O;  2PEJ A;  4XFZ A;  2BUO A;  1VQ9 P;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1JJ2O

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations