The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
103
|
structure length |
103
|
Chain Sequence |
VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGGSGYIPEAPRDGQAYVRKDGEWVLLSTFL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Adenovirus
|
| source organism |
Human adenovirus type 2
|
| publication title |
Adenovirus Fibre Shaft Sequences Fold Into the Native Triple Beta-Spiral Fold When N-Terminally Fused to the Bacteriophage T4 Fibritin Foldon Trimerisation Motif
pubmed doi rcsb |
| molecule keywords |
FIBRITIN, FIBER PROTEIN
|
| total genus |
9
|
| structure length |
103
|
| sequence length |
103
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2004-04-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00608 | Adeno_shaft | Adenoviral fibre protein (repeat/shaft region) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Wheat Germ Agglutinin (Isolectin 2); domain 1 |
#chains in the Genus database with same CATH superfamily 4GU4 A; 1V1H A; 2BT8 A; 4GU3 A; 1V1I A; 1QIU A; 2JJL A; 3S6X A; 1KKE A; 2BT7 A; 2VRS A; 2BSF A; #chains in the Genus database with same CATH topology 3UGI A; 5IKV A; 1AUT L; 4MPI A; 2D1J B; 5JHW C; 5CCL A; 2XBY L; 1WGT A; 1A3P A; 5JBC E; 2UZ3 A; 3MDL A; 5DAE A; 1KKE A; 3IIT B; 2SGE I; 1CT4 I; 3FSY A; 1XBT A; 1IOX A; 2YGO A; 3IJE B; 1PXX A; 2UWO B; 1HT8 A; 2P3F N; 1TGS I; 4JZD L; 2YQP A; 1EPH A; 6COX A; 3N8W A; 2XC4 L; 3OL0 A; 2KNI A; 1Z7K B; 3TO6 A; 1PFX L; 1X4S A; 3N8Z A; 2K2T A; 3TJQ A; 2EI7 B; 1IQI L; 2BOH A; 2J9R A; 4FKD A; 1DS2 I; 1W3S A; 2WPM E; 1UUC A; 1HRF A; 1IQJ L; 3ASI A; 3RU0 A; 2LUY A; 2VWL L; 3EGF A; 4E1G A; 1YUK B; 2J4I B; 3N8Y B; 2W3K B; 3B4V C; 1EPG A; 1KSN B; 1IQM L; 3ZYG A; 2Y38 A; 4O02 B; 1FSB A; 4MMY B; 4CUD A; 5JBB E; 3MQE A; 5L2Z L; 1URK A; 5JVY A; 1PTQ A; 2JW6 A; 4D0E A; 3HS7 A; 2EI6 B; 2MGP A; 4X8S L; 5FUW A; 1LPZ A; 1DX5 I; 2J38 B; 5HI7 A; 1HX2 A; 3CEN L; 1FAR A; 2WZP P; 4BTU A; 1ULM A; 5EX3 A; 2ENN A; 1YO8 A; 4Z6A L; 1KLO A; 4ZH8 B; 1NPE B; 2P28 B; 3UEY A; 2Y7X B; 2A20 A; 1V1H A; 5EGM B; 2GKT I; 5JB9 E; 1TBR R; 1YGC L; 3BPS E; 3ZYI B; 2J34 B; 1P9J A; 3E2I A; 1ADX A; 1N7D A; 1UZK A; 4HGU A; 1DS3 I; 1BUS A; 3N8V A; 2WPH E; 2WCY A; 4CSY A; 1XX6 A; 1CHO I; 2X3T A; 2RHP A; 1FJS L; 4Y71 B; 4ZAE B; 1M8C A; 1CT0 I; 1OMT A; 1TUS A; 3HS5 A; 2E73 A; 4WP4 A; 1P0S L; 2JJL A; 1NQL B; 2VWO L; 2M74 A; 2BSF A; 3LAQ A; 3VE5 A; 3F1S B; 2KMO A; 4M10 A; 3VDU A; 2XC5 L; 1HEV A; 1TPG A; 3TBD A; 4BTI A; 1NUB A; 1N1I A; 5FUY A; 2P16 L; 4JZF L; 1EBV A; 4JYU L; 5J8F A; 1G2L B; 1W4R A; 1IVO C; 5L2Y L; 2XC0 L; 2V53 A; 1CVU A; 1G1Q A; 2PUQ L; 1LPG A; 1APO A; 2YUU A; 1RFH A; 2N1A B; 2BOK L; 1FFM A; 1MQ6 L; 1UZP A; 1W7X L; 4JCV E; 2WPI E; 4L9M A; 2KL7 A; 1CEJ A; 2QPO A; 1DVA L; 2KV4 A; 1IOE L; 2NPR A; 2NU3 I; 1K36 A; 2ENZ A; 4JZE L; 2FD6 A; 4X8V L; 2WGC A; 1PCE A; 4LOR A; 1LR8 A; 3LN1 A; 1UZQ A; 2W2O E; 2RIJ A; 2K2S B; 3LIW B; 1R0R I; 3HO3 A; 3KK6 A; 2CWH A; 2PQ8 A; 1FY7 A; 1JL9 A; 2ERW A; 5E3R A; 2KMP A; 2P6A C; 4XLW A; 2GD4 A; 3SGQ I; 5CCM A; 4XL1 A; 4OTY A; 2VRW B; 3BT2 A; 5FUV A; 2QQC A; 4ZXY L; 1DDX A; 1CSO I; 3NTB A; 1GK5 A; 2SGP I; 1MJA A; 2W0T A; 1YTP A; 4YZU B; 3OVO A; 1F0S B; 2Y81 B; 5HQ8 A; 2DB6 A; 3TGF A; 1WU1 B; 3V65 B; 2ORV A; 1SGP I; 1AN1 I; 2BOU A; 4ISH L; 2J95 B; 4Y79 B; 2Y7Z B; 1XKB A; 1OYV I; 1C5M F; 1TUR A; 1IQL L; 2W2N E; 1U5K A; 1KMA A; 3BJI A; 4BXW A; 9WGA A; 3FCS B; 2W2Q E; 1G1R A; 3LTF B; 4M11 A; 2B0U C; 1K7V A; 3HO5 A; 2F3C I; 2N17 A; 3E59 A; 2QQ0 A; 5KN5 C; 1HT5 A; 3HO4 A; 2Y5G L; 2UWL B; 1HAF A; 5JBA E; 2ELI A; 4JYV L; 3OXF A; 3R05 A; 1OMU A; 3FBY A; 4Y76 B; 2QQD A; 4OVO A; 2KMQ A; 1SGQ I; 2B8T A; 2Y82 B; 3LTG D; 1F0R B; 1NFW B; 4X8U L; 3TZI A; 2ARP F; 2KMR A; 1KLJ L; 5JW1 A; 3UGL A; 3SGB I; 3LC3 B; 4Y7B B; 2NU1 I; 3QAH A; 3D00 A; 1FAK L; 1LMM A; 2RNL A; 2W26 B; 2UWP B; 1LR9 A; 5EX0 A; 1EMO A; 4FM5 A; 3FFG L; 3NTG A; 3SOQ A; 2P3T A; 3P5B L; 1XFE A; 3BT1 A; 1L3Y A; 3NJP C; 3NT1 A; 1L5G B; 1HJA I; 2DDU A; 2M5X A; 4E1P A; 1FYB A; 3KQB L; 1ZAQ A; 1H0Z A; 3N8W B; 3UEJ A; 1MT1 A; 1EMN A; 2BOX A; 4XBM A; 2OU2 A; 3F6U L; 3OXL A; 2HOR A; 2ODD A; 1SGN I; 1RFN B; 3HPT A; 3POY A; 4PH9 A; 2LEO A; 3QWP A; 1HZ8 A; 2W3I B; 3S6X A; 1WHE A; 1EZQ B; 2VVU L; 4BDW A; 1JV2 B; 2GKR I; 3KRK A; 5IKR A; 2WVJ A; 1CGI I; 5CKQ A; 1ULK A; 1PJU A; 1UVG A; 5L30 L; 3FC3 A; 3PDN A; 4DNC A; 1N13 A; 2JZM A; 4RRZ A; 2UVO A; 3ZYJ B; 2L8E A; 1IQF L; 1F7E A; 4ZHA B; 2VJ3 A; 4RRX A; 2F9B L; 1OB1 C; 2H9E C; 2HOX A; 1X74 A; 2WPL E; 1FAQ A; 4A94 C; 2EI8 B; 2QQE A; 2P3U A; 2WPJ E; 3M36 L; 1YUF A; 1I0U A; 4A24 A; 1G1S A; 2YGQ A; 2CWG A; 5J8C A; 2VVC K; 3Q7D A; 3U73 A; 1MJ9 A; 5CKN A; 1EQH A; 2BUS A; 2H9E L; 1Y1C A; 1LR7 A; 2SGQ I; 2YGP A; 5FUX A; 1SZB A; 3LC5 B; 4Z0L A; 4A7I A; 2Q1J B; 2FNF X; 4CUE A; 2DIP A; 4C16 A; 1WHF A; 4ZXX L; 3UGD A; 1YU6 C; 1TIH A; 1G1T A; 1KBE A; 2VWN L; 1SGD I; 3CS7 L; 1TBQ R; 1ATA A; 4X8T L; 1O5D L; 1HAE A; 1CE3 A; 1CVW L; 3HH2 C; 2NU4 I; 2VWM K; 3KL6 B; 1PTR A; 2B7D L; 2FLR L; 2P95 L; 2GIV A; 1EPJ A; 1SGE I; 1YUG A; 2WG4 B; 1B9W A; 3C9A C; 2PHB B; 1LPK A; 2P26 A; 1Q4G A; 3KQC L; 4E1R A; 5KIR A; 1EQG A; 2BQ7 A; 4TGF A; 4Y6D B; 2P93 L; 3V64 C; 2JKH L; 1NFU B; 2VVV L; 4D90 A; 3MEK A; 1LMJ A; 4RS0 A; 1QIU A; 3TH3 L; 3M37 L; 5E3P A; 1IQK L; 1IQN L; 1LK9 A; 2PR3 B; 1IGZ A; 2JYY A; 2BZ6 L; 2ORW A; 2BQW A; 2SGD I; 5K0H B; 2KCX A; 5F19 A; 4SGB I; 2BT8 A; 2ADX A; 3QMO A; 1TOZ A; 3KQE L; 4NGA L; 1PTH A; 1V3X B; 4G1M B; 2OD1 A; 1DIY A; 1PPF I; 4UXJ A; 2VH0 B; 2BQ6 A; 4UXI A; 1U8C B; 3H5C B; 3QCW A; 3QTL D; 3N8Y A; 2WPK E; 3SOB B; 5CIS A; 5IKT A; 1CX2 A; 3R5C A; 1V1I A; 2WYG B; 4RUT A; 1CCV A; 1IP0 A; 5JVZ A; 1IQG L; 1EPI A; 1EAI C; 2V1C C; 1KBF A; 5IKQ A; 3UOE A; 1TBO A; 4OTJ A; 2OZU A; 2J87 A; 1XA6 A; 2GKV A; 1XDT R; 1HDL A; 1OVO A; 1VDD A; 2OYE P; 2CWF A; 1SGR I; 1K37 A; 5CKM A; 2BT7 A; 1P9G A; 2FZZ L; 1G2M B; 3PGH A; 3N8X A; 3R5B A; 4NA9 L; 1CCF A; 1UVF A; 1WTJ A; 2Y5H L; 2OVO A; 2NU2 I; 3OLU A; 7WGA A; 2G00 L; 4GU4 A; 4AML A; 1IY6 A; 1NZI A; 4CUF A; 5FDQ A; 4B6D A; 1MOX C; 4Y7A B; 3GIS X; 2SGF I; 2XBX L; 1Y8F A; 4GI3 C; 1P9Z A; 2W2P E; 5E8D A; 1HPT A; 4UXH A; 1IGX A; 5F1A A; 1Q9B A; 2BMG A; 3OXG A; 1IY5 A; 3K9X A; 2MGR A; 4RRY A; 3CA7 A; 3HS6 A; 1BF9 A; 2XBW L; 1HRE A; 2J2U B; 2OYU P; 2Y5F L; 2LB7 A; 2L7X A; 2CJS C; 3UFF A; 1XKA L; 1HCG B; 1PGE A; 2WFX B; 1HJ7 A; 1ULN A; 1TOT A; 5I46 L; 2XBV L; 1F7M A; 2BO2 A; 2KB9 A; 2AYL A; 2WYJ B; 1UHA A; 4ISI L; 2X52 A; 2J94 B; 3GCW E; 1NFX B; 1PRH A; 1TLE A; 2VH6 B; 1TBN A; 2E5R A; 3TO7 A; 2I9A A; 2FLB L; 2WFT A; 4Z0K B; 4BTT A; 1FF7 A; 4COX A; 1IW4 A; 1ATE A; 3TK5 B; 1ATD A; 3KCG L; 2V1C A; 2FLG A; 2P94 L; 3Q3K B; 1ATB A; 3LN0 A; 1Z6E L; 1WKX A; 1FAX L; 2DKV A; 1NFY B; 2JXD A; 3CFW A; 3QH0 A; 4O1Z A; 2JA1 A; 3TO9 A; 2P3F L; 3R5D A; 1Z6C A; 1MJB A; 4YT6 L; 1Z2I A; 2TGF A; 2CJI B; 1CQE A; 1U67 A; 1JBU L; 2I9B A; 1SGY I; 3GCX E; 4D0F A; 2K9H A; 2NU0 I; 1W8B L; 1EGF A; 3OLT A; 2Y0M A; 2N52 A; 5E3Q A; 4AQT A; 1M1X B; 1IQH L; 4RRW A; 1IQE L; 1K7T A; 3ELA L; 1UZJ A; 3KQD L; 1K7U A; 1X7A L; 4BDX A; 2GVI A; 2W2M E; 1R79 A; 3VDP A; 2XRC A; 3R5A A; 3TK6 B; 3SEK C; 3SOV A; 3FSX A; 3KY9 A; 2N71 A; 1J9C L; 2VRS A; 1WGC A; 4MMZ B; 3CXL A; 4LMF A; 5JB8 E; 1DQB A; 2MHP A; 1IJQ A; 3SW2 A; 2WG3 C; 2ROW A; 2RA0 L; 3DEM A; 3U7U G; 3TOA A; 1CGJ I; 1QFK L; 1KLI L; 4GU3 A; 4BXS A; 1Y1B A; 3TOB A; 4MMX B; 1MQ5 L; 4YT7 L; 3ENS A; 1S20 A; 2W86 A; 2Y80 B; 5COX A; 1LQD A; 1FE2 A; 1CT2 I; 1NXU A; 1KIG L; 1APQ A; 3RR3 A; 1NT0 A; 1BMO A; 2RC4 A; 3GOX A; 1COU A; 1M8B A; 4NG9 L; #chains in the Genus database with same CATH homology 4GU4 A; 4JCV E; 2L8E A; 1IY6 A; 3UGI A; 4L9M A; 1X74 A; 2JZM A; 4B6D A; 2QPO A; 5CCL A; 5JHW C; 1FAQ A; 2OVO A; 2QQE A; 2SGF I; 2UZ3 A; 1Y8F A; 5DAE A; 4GI3 C; 2NU3 I; 3FC3 A; 2ENZ A; 1KKE A; 1HPT A; 2SGE I; 1CT4 I; 4UXH A; 4A24 A; 3OXG A; 1PCE A; 1XBT A; 1IY5 A; 1LR8 A; 1R0R I; 2BUS A; 1Y1C A; 1TGS I; 1LR7 A; 2YQP A; 2SGQ I; 2ERW A; 5FUX A; 2KMP A; 2FNF X; 3OL0 A; 2L7X A; 2P6A C; 2CJS C; 1Z7K B; 3UFF A; 1X4S A; 2DIP A; 3SGQ I; 5CCM A; 1TOT A; 3TJQ A; 2VRW B; 3UGD A; 1YU6 C; 1TIH A; 5FUV A; 2QQC A; 2J9R A; 1KBE A; 4FKD A; 1SGD I; 1DS2 I; 1TBQ R; 1W3S A; 1CSO I; 1CE3 A; 3HH2 C; 1UUC A; 1TBN A; 2NU4 I; 2LUY A; 2SGP I; 3RU0 A; 2E5R A; 1PTR A; 2W0T A; 1YTP A; 3OVO A; 3B4V C; 1IW4 A; 1SGE I; 5HQ8 A; 2DB6 A; 2V1C A; 2ORV A; 1SGP I; 1AN1 I; 4E1R A; 1OYV I; 1TUR A; 1U5K A; 1PTQ A; 1KMA A; 2JW6 A; 3BJI A; 2JXD A; 3MEK A; 2JA1 A; 1PJU A; 1QIU A; 2B0U C; 2F3C I; 5FUW A; 5HI7 A; 2N17 A; 3E59 A; 1FAR A; 2QQ0 A; 1SGY I; 3OXF A; 2ELI A; 2ENN A; 2K9H A; 5EX3 A; 2NU0 I; 1OMU A; 2JYY A; 2QQD A; 2SGD I; 2ORW A; 4OVO A; 2KMQ A; 2N52 A; 1SGQ I; 2B8T A; 3UEY A; 2KCX A; 2A20 A; 1V1H A; 2BT8 A; 2GKT I; 4SGB I; 1TBR R; 2GVI A; 3E2I A; 1R79 A; 3VDP A; 2ARP F; 2KMR A; 4HGU A; 1DS3 I; 3UGL A; 3SGB I; 1BUS A; 2OD1 A; 2XRC A; 2WCY A; 1PPF I; 2NU1 I; 3SEK C; 4UXJ A; 3D00 A; 1XX6 A; 1CHO I; 1LR9 A; 4UXI A; 5EX0 A; 1M8C A; 1CT0 I; 1OMT A; 1TUS A; 2E73 A; 3KY9 A; 3QTL D; 2JJL A; 2N71 A; 2VRS A; 2BSF A; 3VE5 A; 1HJA I; 3CXL A; 2KMO A; 3VDU A; 2M5X A; 1V1I A; 4E1P A; 1FYB A; 1NUB A; 1H0Z A; 5FUY A; 3UEJ A; 1MT1 A; 2ROW A; 2V1C C; 1KBF A; 1CGJ I; 1Y1B A; 4GU3 A; 1TBO A; 2J87 A; 1XA6 A; 2GKV A; 1HDL A; 3OXL A; 1OVO A; 1VDD A; 1CT2 I; 1SGN I; 1W4R A; 2ODD A; 2LEO A; 3QWP A; 1SGR I; 3S6X A; 2BT7 A; 2V53 A; 1BMO A; 2GKR I; 3GOX A; 2WVJ A; 2YUU A; 1CGI I; 1M8B A; 1RFH A; 1UVG A; 1UVF A; 3PDN A; 2N1A B; 1N13 A; 2NU2 I;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
