The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
231
|
structure length |
186
|
Chain Sequence |
MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQMVGVFASRATHRPNPLGMSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSSVKMTVEFTEQAKSAVKKREEKRPHLSRFIRQVLEDRIYGMSLYEFNVKWAGTVNCVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-Ray Structure Of YaeB from Haemophilus influenzae. Northeast Structural Genomics Research Consortium (NESGC) target IR47.
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Haemophilus influenzae
|
| molecule keywords |
Hypothetical UPF0066 protein HI0510
|
| total genus |
33
|
| structure length |
186
|
| sequence length |
231
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-10-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01980 | TrmO | tRNA-methyltransferase O |
| A | PF18389 | TrmO_C | TrmO C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | YaeB-like | ||
| Alpha Beta | 2-Layer Sandwich | YaeB-like fold | YaeB-like |
#chains in the Genus database with same CATH superfamily 3OKX A; 1XQB A; 2NV4 A; #chains in the Genus database with same CATH topology 1EP1 B; 1H8H A; 4FXI A; 1N05 A; 1YIJ B; 2DEU A; 4PAA A; 4P26 A; 5IWH A; 3CCS B; 2XNJ A; 1MRZ A; 4XN0 A; 4YAW A; 2VNH A; 3VO1 A; 4ZGN B; 1UD5 A; 1F20 A; 3R6J A; 4FXU A; 2VNI A; 2RC6 A; 4II2 A; 4JMQ A; 3BH4 A; 5TY0 A; 1K28 D; 4QVJ A; 1G7R A; 1H8E A; 2X6X A; 4QV2 A; 1JNY A; 2V7V A; 3KL9 A; 2X6W A; 3OOC A; 1BPL A; 5IYP A; 2W6J A; 1VLY A; 3QFT A; 1ZM3 A; 5HKK A; 3VJ7 A; 1VQ7 B; 4MMG A; 4XON A; 1SM4 A; 1I8D A; 1E1Q A; 1RQP A; 4LSY A; 2V7X A; 3FJO A; 2GJK A; 4LBW A; 1WTH D; 4DK0 A; 3BY1 A; 5A8A A; 4X0C A; 1BX1 A; 4PC6 A; 3R6K A; 4YAL A; 2VNK A; 1OB0 A; 1BLI A; 4PGO A; 5DN6 A; 4YAU A; 4X7D A; 1NJI D; 1AIP A; 3OP1 A; 3CCJ B; 3OEI C; 3CCV B; 3OFN A; 5KW9 A; 4XOP A; 1YIT B; 3W2G A; 5FA6 A; 5FNZ A; 3GVL A; 1E3X A; 4XM3 A; 3FKS A; 1SKY B; 4YEJ A; 2VJJ A; 2B5O A; 3T56 B; 4RDL A; 3E1Y E; 1UD3 A; 1KK1 A; 4G7W A; 2HCJ B; 3JQP A; 1Q82 D; 3W5H A; 2YWH A; 4P6Y A; 4P25 A; 3U2Q A; 1EWY A; 1EFR A; 4B48 A; 1XE1 A; 4HE5 A; 3OZU A; 4TN1 A; 2CF4 A; 4K1X A; 3VMF A; 4J0Q A; 2KC9 A; 2OK7 A; 3CW2 A; 3G6E B; 2NPF A; 1WOS A; 4WZK A; 4XLF A; 4RJL A; 4OPV A; 4MYU A; 2BN4 A; 1CQX A; 4M0L A; 3OJW A; 4AF6 A; 1VF7 A; 1VJS A; 4Y7C A; 4XL9 A; 4RLZ A; 1UMK A; 4TT3 A; 1JA1 A; 4B4D A; 1HZE A; 1VQ6 B; 1WU8 A; 1FNB A; 2EIX A; 1VQL B; 1ZUN B; 2BM0 A; 4ROX A; 3AVV A; 1XFO A; 5FL7 A; 4OOS A; 3W2F A; 3ZBT A; 3JQR A; 3WQZ A; 2JN9 A; 1QH0 A; 4XLE A; 1KQS B; 4GQN A; 4LC0 A; 3WBK A; 5IYN A; 4RM0 A; 4YAF A; 2X8K A; 4WQM A; 2F1L A; 1YJ9 B; 1B23 P; 1WOP A; 2F4N A; 3Q6R A; 2VBU A; 4Z4T A; 1GJR A; 1B2R A; 2ZXI A; 4M2L A; 3SEJ A; 2HLD A; 3VO2 A; 1R5N A; 1KD1 D; 2Q6K A; 4ZCM A; 4LBY A; 1T6Y A; 4YEL A; 4OP7 A; 4MCT B; 4KKS A; 1VQP B; 2CND A; 4LBZ A; 2V7Q A; 1K9M D; 1NDH A; 2B7C A; 2J7K A; 2QGG A; 2ZZQ A; 1VHE A; 3JQQ A; 2ZBV A; 4PC3 A; 2CBX A; 4OOX A; 2XZO A; 2PMD A; 3QFC A; 1EFC A; 1Q81 D; 1VQM B; 3ASQ A; 4B3F X; 1E3Z A; 1PKV A; 3QE2 A; 3CPX A; 4MYT A; 2A6S A; 4ZCL A; 3SKB A; 5HZB A; 4RD2 A; 4XLC A; 4UZE A; 1WMI A; 1VHO A; 3Q6Q A; 1Y0Y A; 4XN3 A; 1W0J A; 2ZZG A; 1T5E A; 3W5U A; 3LQE A; 4P3I A; 4MMJ A; 1F60 A; 1IJE A; 3P26 A; 2BSA A; 4RD3 A; 1T6X A; 4P22 A; 2OTL B; 1K8A D; 1OHH A; 1NB0 A; 4WZE A; 1D1N A; 1CNE A; 2M5S A; 4C0S A; 1DDG A; 1XQB A; 4QHY A; 4ASU A; 3LO8 A; 3ZBU A; 1WOR A; 2W6I A; 3Q3A A; 2HDN B; 4DQK A; 4XKW A; 2NV4 A; 4XLA A; 2D3L A; 4IW3 B; 4M1K A; 2C4U A; 3CRZ A; 2GK7 A; 2Q6O A; 2ZZE A; 3AVU A; 3A8I A; 3ONY A; 2ZXH A; 5CZE B; 2QA4 B; 4M53 A; 2DOG A; 4TMT A; 1KMH A; 3ZZU A; 5CZF C; 5FIU A; 3G05 A; 1V0E A; 3B82 A; 4U9U A; 3H94 A; 4YHB A; 4X07 A; 4Q7J B; 1N8R D; 2BM1 A; 4Z4S A; 1UD8 A; 3CMM A; 3GSI A; 1JB9 A; 1N07 A; 4YY3 Y; 1ZM2 A; 4ACA A; 3W2I A; 2PE3 A; 4E0F A; 4DQL A; 3I55 B; 2GJR A; 3CCL B; 1BQE A; 4WZL A; 5H5J A; 2JJ2 A; 4RD6 A; 1M1K D; 4X7E A; 1EXM A; 1QG0 A; 4L8J A; 4Z1M A; 4YXW A; 3BPQ B; 4X7C A; 5CDF A; 3GVK A; 2DYI A; 3WYA A; 4ACB A; 2LZJ A; 5B6I A; 3OEH A; 4P3Y A; 4HIZ A; 3ASP A; 4X7F A; 2WYR A; 3G5O B; 4MCX B; 1IJF A; 4Q2U B; 1TUI A; 1W9X A; 3W2E A; 2GPJ A; 2QTZ A; 3V76 A; 2OTJ B; 2ZL5 A; 3G4S B; 1QVG B; 3WXM A; 1K73 D; 3D26 A; 3CXC B; 1GAW A; 1V0F A; 3Q39 A; 4RPB A; 1VQ4 B; 3G71 B; 1D8T A; 4P1V A; 5BSX A; 1VQ9 B; 2ZTN A; 2GK6 A; 2BGJ A; 1UD4 A; 3WNB A; 1QUF A; 3VR6 A; 1OB5 A; 1QGY A; 1RQR A; 1E64 A; 4Z4Z A; 4XQF A; 2X85 A; 3A1P A; 3AGP A; 4ZGQ B; 3OE7 A; 3VNV A; 1KJZ A; 1KK0 A; 2WR8 A; 3CMA B; 2DY1 A; 1QFJ A; 1WSV A; 3PUN A; 2OBR A; 3CC7 B; 2A6Q E; 1PJ7 A; 3GQB A; 2E1B A; 2BF4 A; 5IYR A; 2BMW A; 1G7S A; 3ASS A; 1S0U A; 4XLH A; 4Y9U A; 1N06 A; 2OBT A; 4UAJ A; 3BNW A; 4PC7 A; 4NNJ A; 1KK3 A; 3QSY A; 2ZTG A; 2EFG A; 5L46 A; 2XEX A; 4FBD A; 1R5B A; 4N3N A; 2QDX A; 1VQO B; 2XOK A; 3CB4 A; 3KEW A; 1YLO A; 1WOO A; 1QGZ A; 2GQF A; 3CC2 B; 1WDT A; 2YWE A; 1Q9S A; 3OPO A; 2YWF A; 1W87 A; 4G5G A; 2D9R A; 2KVO A; 4WWV A; 2FHZ B; 3MHP A; 4KKU A; 5IYW A; 1W35 A; 4P9S A; 3LNN A; 5BSY A; 3OEE A; 5IYQ A; 3W2H A; 4WZT A; 5HXB A; 1EP3 B; 1PJ5 A; 4EH1 A; 1Y0R A; 2VJI A; 2GJP A; 1TTT A; 3MMP A; 2QN6 A; 5J35 A; 2ZL6 A; 4Z4R A; 2VZL A; 1R5O A; 2F43 A; 4YAO A; 4RCZ A; 2JJ1 A; 5F4J A; 5EMN A; 1E1R A; 2P3M A; 2QTL A; 1MAB A; 4OPO A; 1Z8M A; 3B78 A; 1GO2 A; 1BJK A; 4XKV A; 4RPD A; 1E62 A; 1NRK A; 1KK2 A; 3U6B A; 3CCM B; 1D2E A; 2C78 A; 3AGQ A; 3A8K A; 4FN5 A; 3ZIA A; 2DFX E; 3SLD A; 3U6K A; 1COW A; 4XOT A; 2QE7 A; 4TMZ A; 4R71 A; 1OGJ A; 3CCE B; 3AVW A; 4II3 A; 3CP8 A; 2VNJ A; 2CK3 A; 1H42 A; 2QMU A; 4TMX A; 4X05 A; 4NRN A; 3SJZ A; 2V7T A; 5DS0 A; 1TVC A; 5CEG B; 2GRE A; 1DAR A; 3WNC A; 4RD4 A; 3CTA A; 4XNF A; 4Z4Y A; 2XZP A; 4F7D A; 3V7A A; 2I1L A; 1QFZ A; 1UD2 A; 5IXL A; 1IHM A; 4TMV A; 3VNU A; 5IK2 A; 4RDJ A; 4NCN A; 4RD0 A; 1XB2 A; 4NBS A; 4RCY A; 3KXE A; 4FXH A; 1E43 A; 2WJV A; 4Z4U A; 2KHE A; 1CNF A; 3FPP A; 1YX2 A; 2JDI A; 3BC9 A; 1I18 A; 2KC8 A; 5CW7 B; 2XND A; 5KNL A; 1YJW B; 2A8K A; 5F4O A; 2R6H A; 1N0V C; 1UD6 A; 3A3B A; 2V31 A; 2WSS A; 3BY2 A; 2Q6I A; 4PC2 A; 5GV7 A; 2WZP P; 4DNT B; 2XGJ A; 2OBS A; 2Q6L A; 2X6Y A; 2DJH A; 1YJN B; 1EFT A; 3PVD A; 3QFS A; 2ZZF A; 3PA1 A; 3QFR A; 4P2N A; 1G7C A; 3ZUG A; 4HE6 A; 4LTT A; 3W5V A; 2R9V A; 3PA2 A; 3RY8 A; 2XNC A; 4ML0 B; 4H9G A; 4KKT A; 3CES A; 2D3N A; 3CME B; 5TRD A; 3GVJ A; 4ML2 A; 4B43 A; 2BVN A; 2DER A; 3MCA A; 1G7T A; 1WPC A; 2B7B A; 4DK1 A; 1EFU A; 4RD1 A; 1HVX A; 3HI2 B; 2CC2 A; 1VLO A; 3Q38 A; 4G7X A; 4G6I A; 1GAQ A; 1S72 B; 1VQ5 B; 4FXE D; 3CCQ B; 3ONU A; 2X3U A; 1DDI A; 1V5V A; 2WZN A; 1VQK B; 1FRN A; 4P12 A; 1A8P A; 3NE5 B; 4ZV4 A; 2BGI A; 3I1F A; 2XZL A; 1VQ8 B; 2YWG A; 1U2R A; 5A89 A; 2V4D A; 3GIR A; 1Q7Y D; 2OTR A; 1KTV A; 2VBT A; 3AST A; 1KZL A; 3ASR A; 2FX3 A; 3DDY A; 1JJ2 B; 4XOR A; 4TMW A; 2DCU A; 5F4M A; 3CCR B; 2A6R A; 1NB9 A; 3LQ6 A; 3OJX A; 3FPK A; 3OZW A; 4C43 A; 3SJP A; 3HAG A; 4QVA A; 1OGI A; 4FK8 A; 2CRV A; 5KSW B; 1W0K A; 2QEX B; 1HA3 A; 5HZA A; 2OYN A; 2ZL7 A; 3AVY A; 3WBJ A; 1KC8 D; 1QFY A; 1P4M A; 1FNM A; 1FDR A; 4OPS A; 2V7U A; 2VYQ A; 4TKO B; 1H85 A; 3OKX A; 5TV2 A; 3CP2 A; 2WPD A; 1PJ6 A; 1TLL A; 1ZM4 A; 2HMA A; 3WND A; 4B44 A; 1Q86 D; 3PUM A; 3CCU B; 4OOV A; 1JA0 A; 3BCD A; 3B8H A; 2C77 A; 4XD7 A; 3OAA A; 1BX0 A; 2WJY A; 3AVT A; 4G1V A; 4Y9R A; 3BQJ A; 1YI2 B; 1IB0 A; 1VQN B; 4B47 A; 3I56 B; 2ZBU A; 4UZF A; 1KRH A; 1QVF B; 4PX8 A; 1FND A; 2PD0 A; 3ZZ0 A; 1N0U A; 5H59 A; 1OB2 A; 3PEN A; 1W34 A; 4XMY A; 4N3G A; 3ZPN A; 4AVZ A; 2C5B A; 3ISX A; 3A8J A; 2DET A; 3CD6 B; 1N08 A; 1YHQ B; 4X8I A; 2C2W A; 3CPW B; 4DNR B; 3H9N A; 1GVH A; 3WY9 A; 4XR6 A; 4RDK A; 3T53 B; 2OK8 A; 4X06 A; 1WP6 A; 1GR1 A; 2ZIT A; 2E1R A; 1ZM9 A; 5LMZ A; 3A35 A; 3J81 k; 2X0K A; 4FWT A; 5E6T A; 1EP2 B; 2PIA A; 1FRQ A; 2BV3 A; 5TR9 A; 2D74 A; 1FX0 A; 2DIE A; 4AF7 A; 1BMF A; 1QUE A; 4B3X A; 2CW5 A; 4PAB A; 3AO9 A; 4QUZ A; 5J3O A; 1T6Z A; 1S4M A; 3T51 B; 2PLF A; 1M90 D; 1E63 A; 1WSR A; 3P27 A; 2C4T A; 1AMO A; 5DSZ A; 3OW7 A; 1SKQ A; 4BPR A; 1QGA A; 1E79 A; 4LBV A; 4TSF A; 4CQJ A; 3CC4 B; 3LVB A; 4ZCI A; 2VBS A; 2X53 S; 5FO0 A; 3OZV A; 5THX A; 3ZZT A; 4AC9 A; 1W2B B; 5AN9 A; 1NBM A; 4P6V F; 3AVX A; 3JU4 A; 4Z4W A; 2AHO A; 2JIZ A; 2F1M A; 2VBV A; 2Z6B D; 4M4S A; 4QFM A; 5A88 A; 1QX4 A; 2FVG A; 3BCF A; 2V7W A; 1J9Z A; 3SLN A; 4LS4 A; 1ELO A; 5JBQ A; 3ES9 A; 2RC5 A; 3A3G A; 4PC1 A; 5GV8 A; 3OW2 B; 3ZC3 A; 4G1B A; 1DG1 G; 5FO1 A; 4B3G A; 3E20 A; 2BPO A; 1I7P A; 1FNC A; 4UZU A; 4Z4V A; 2C5H A; #chains in the Genus database with same CATH homology 3OKX A; 1XQB A; 2NV4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
