The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
68
|
sequence length |
326
|
structure length |
326
|
Chain Sequence |
DTALVRPVKTATVSSQSVILKDFSGMVEAVEYVKLAFRVSGQIINLPVVEGQRVKKGQLIAAIDPRDISLQYAADKAAYETAAAQVERNKRLLGRQAISLQEYEISVANYQKAKSAYELSTNNMRDTKLLAPFDGSIETRLVENYQRVNSGEGIVRLVNTRKLRIKFTVPDDYLYLLRAKDATFKVEFDTYKGTVFNARLEEYLDISTDGTGIPVTIIIDDAAFDRTIYDVKPGFTCNIRLASDIAPFIEEKLMNVPLSAVFGDSENKNTYVWIVKDNKVNRREVTVYSPTGEANLLISKGLKPGETVVTAGVYQLVEGQRIKEVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a Putative efflux transporter (BACEGG_01895) from Bacteroides eggerthii DSM 20697 at 2.06 A resolution
rcsb |
| molecule tags |
Transport protein
|
| source organism |
Bacteroides eggerthii
|
| molecule keywords |
Putative efflux transporter
|
| total genus |
68
|
| structure length |
326
|
| sequence length |
326
|
| ec nomenclature | |
| pdb deposition date | 2013-06-17 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | ||
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Elongation Factor Tu (Ef-tu); domain 3 | ||
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | ||
| Mainly Beta | Beta Barrel | conserved putative lor/sdh protein from methanococcus maripaludis s2 fold | conserved putative lor/sdh protein from methanococcus maripaludis s2 fold |
