The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
68
|
sequence length |
273
|
structure length |
257
|
Chain Sequence |
GGMQHNLIAFLSDVGSADEAHALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLADVPHSFPAHTVICATVYPETGTATHTIAVRNEKGQLLVGPNNGLLSFALDASPAVECHEVLSPDVMNQPVTPTWYSKDIVAACAAHLAAGTDLAAVGPRIDPKQIVRLPYASASEVGIRGEVVRIDRAFGNVWTNIPTHLIRLEVKTVLELPFCKTFGEVDEGQPLLYLNSRGRLALGLNQSNFIEKWPVVPGDSITVSP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Discovery and characterization of a marine bacterial SAM-dependent chlorinase
pubmed doi rcsb |
| molecule tags |
Biosynthetic protein
|
| source organism |
Salinispora tropica
|
| molecule keywords |
Hypothetical protein
|
| total genus |
68
|
| structure length |
257
|
| sequence length |
273
|
| ec nomenclature |
ec
2.5.1.94: Adenosyl-chloride synthase. |
| pdb deposition date | 2007-06-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01887 | SAM_adeno_trans | S-adenosyl-l-methionine hydroxide adenosyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Bacterial fluorinating enzyme like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal |
