The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
110
|
sequence length |
361
|
structure length |
361
|
Chain Sequence |
HSSGLVPRGSHMANVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
rcsb |
| molecule tags |
Translation
|
| source organism |
Methanosarcina mazei
|
| molecule keywords |
Protein translation elongation factor 1A
|
| total genus |
110
|
| structure length |
361
|
| sequence length |
361
|
| ec nomenclature | |
| pdb deposition date | 2013-12-08 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Translation factors | ||
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Translation factors | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
