The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
121
|
sequence length |
331
|
structure length |
320
|
Chain Sequence |
SSERIRYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQKGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLPRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The archaeo-eukaryotic primase of plasmid pRN1 requires a helix bundle domain for faithful primer synthesis
pubmed doi rcsb |
| molecule keywords |
ORF904
|
| molecule tags |
Replication
|
| source organism |
Sulfolobus islandicus
|
| total genus |
121
|
| structure length |
320
|
| sequence length |
331
|
| ec nomenclature | |
| pdb deposition date | 2010-03-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09250 | Prim-Pol | Bifunctional DNA primase/polymerase, N-terminal |
| A | PF13010 | pRN1_helical | Primase helical domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A | ||
| Mainly Alpha | Orthogonal Bundle | Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 | Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Prim-pol fold | Bifunctional DNA primase/polymerase domain |
#chains in the Genus database with same CATH superfamily 1RNI A; 1RO0 A; 3M1M A; 3H20 A; 1RO2 A; #chains in the Genus database with same CATH topology 2XZ1 C; 2FAE A; 2PEN A; 3CME P; 1UTU A; 2KOD A; 1VQ4 P; 3DS2 A; 2GZE A; 2GDX A; 2CG5 B; 5BS2 A; 2LPK A; 2OTJ P; 2N98 A; 3CXC O; 1YJ9 P; 2EHS A; 2K2Q A; 1JJ2 O; 1QSA A; 2K0X A; 1M74 A; 2FQ1 A; 1VQ5 P; 2XV6 A; 2JB0 A; 1Q7Y Q; 2N6Y A; 2PEI A; 2XZ0 D; 2K93 A; 3CMA P; 3CPW O; 2FQ2 A; 1VQ9 P; 2PEK A; 1FR2 A; 4PH0 A; 1F80 D; 2JGP A; 1BXI A; 3CCJ P; 4F37 A; 2MVU A; 2DGY A; 2N50 A; 3G21 A; 2LOL A; 2CWO A; 2X2B A; 2M8P A; 2Z45 A; 4U0D A; 5DCK A; 1KQS O; 1M90 Q; 4H2Y C; 1KC8 Q; 3CCV P; 2MD9 A; 3EJB A; 1EMV A; 2KG6 A; 5JPA A; 1K9M Q; 2PBI A; 3DPH A; 1VQK P; 3H20 A; 3G28 A; 2ROQ A; 3B5I A; 2EG5 A; 1QRJ A; 3DS4 A; 4JGI A; 2KW2 A; 2K0Y A; 2Z44 A; 1Z6M A; 1VHN A; 1KLP A; 1D1D A; 2KOQ A; 1S72 P; 3NY7 B; 1K73 Q; 5I4T G; 1CEI A; 2KGA A; 1BMT A; 4COP A; 1Q81 Q; 1E0H A; 1NJI Q; 2JQ4 A; 2KGC A; 1X3O A; 2VLN A; 2L6E A; 4XFZ A; 5KP6 B; 1N8R Q; 1M6E X; 2EFJ A; 4U0A A; 2KOP A; 2N5I A; 2EHT A; 3DS5 A; 2FAC A; 2JYL A; 1ZMB A; 3OW2 O; 2NO8 A; 3IV9 A; 1EIA A; 1OR5 A; 2KGE A; 2LF4 A; 3I55 P; 4IZ6 A; 2LML A; 3CCE P; 4HH3 C; 4HEH A; 4XFY A; 2K5X A; 2M8N A; 5HGN A; 2GZG A; 5EJD A; 4R0M A; 3G6E P; 4CA3 A; 3VRL C; 3CCU P; 2L9F A; 3Q20 A; 1K98 A; 1AUM A; 2PEJ A; 2L0Q A; 5F2N A; 2AFD A; 2KG9 A; 1ZNV A; 2FMM E; 3CCR P; 2CNR A; 2K94 A; 1IMQ A; 1YI2 P; 2MF4 A; 1YJN P; 3H0D A; 4GR2 A; 2KG8 A; 1A43 A; 3RG2 A; 2EIA A; 2BHV A; 3CC7 P; 4U0F A; 2Z46 A; 2QNW A; 2JO0 A; 5KP8 B; 4WYM A; 2QA4 P; 3B4Q A; 7CEI A; 5HGO A; 1VQM P; 4PH1 A; 3P05 A; 4U0B A; 5KP7 B; 4DG9 A; 1VQP P; 2OAR A; 1A8O A; 3CCS P; 4G86 A; 5CZD B; 4M0M A; 3G0V A; 2JU2 A; 3M1M A; 3CC4 P; 3EJE A; 2DNW A; 5HGM A; 3G1G A; 2LKI A; 2KOS A; 1QTE A; 2E1M A; 1YJW P; 1Q6B A; 1SLY A; 3DS0 A; 4X8Q A; 2GDY A; 1QVG O; 2GYK A; 1Q82 Q; 2GZI A; 4IPY A; 5F2O A; 4BPG A; 1L0H A; 1W53 A; 3MGE A; 4XRO A; 2JBG A; 1UJZ A; 4PXH B; 4UHP B; 2L22 A; 2J6Y A; 1EOQ A; 3CCM P; 1IUQ A; 4BPH A; 1YIT P; 3DS1 A; 1T8K A; 2GDW A; 1UZ3 A; 1K8A Q; 4XFX A; 1SUY A; 3LMO A; 4BPF A; 5HVC A; 1AYI A; 1R8J A; 2AF8 A; 3GKL C; 2VSQ A; 3IVA A; 2N5H A; 2FVA A; 3DTJ A; 5F2K A; 2K92 A; 3CCL P; 2XXM A; 3CCQ P; 1R5Q A; 1SV1 A; 2KOR A; 4XRQ A; 2PEM A; 3CC2 P; 5BS1 A; 4QKO A; 1UNK A; 2KR5 A; 2PY8 A; 1VQ8 P; 1L0I A; 2XT1 A; 3G4S P; 3BUL A; 2LIW A; 2KWL A; 1IMP A; 2L4B A; 2FHS C; 4PWV B; 3DS3 A; 5HGL A; 1GXH A; 3G26 A; 3G1I A; 1Q86 Q; 5EW5 E; 1V2Z A; 2PEQ A; 1HY8 A; 2QEX P; 1BAJ A; 3CE7 A; 2MR7 A; 2JU1 A; 4U0E A; 4M0I A; 2ERH A; 2FAD A; 2PEO A; 1W2B O; 1RNI A; 2WPT A; 2LL8 A; 1AF8 A; 2VLQ A; 1QVF O; 2M5R A; 1K30 A; 3GJN A; 3LRY A; 1VQ6 P; 1YIJ P; 3U43 A; 2CGQ A; 2FVF A; 4QNB A; 2JAZ A; 2N6Z A; 1VKU A; 2BUO A; 4H2X C; 2K0D X; 2JYG A; 2VLP A; 3EJD A; 1VQN P; 1K7Y A; 2LTE A; 3L9T A; 1NQ4 A; 1ACP A; 2CQ8 A; 2P9X A; 3HYB A; 1RO2 A; 2FVE A; 2I2X B; 2GZJ A; 3GZL A; 1RO0 A; 3BJD A; 1VQO P; 2GZF A; 1DNY A; 2MVV A; 3H47 A; 4MRT C; 3GZM A; 2PNG A; 2J6Z A; 1M6N A; 5C5E A; 2AFE A; 2FQ0 A; 1VQ7 P; 2J70 A; 3H4E A; 3E2D A; 5HV8 A; 2VLO A; 1M1K Q; 3EZX A; 4GR6 A; 3G29 A; 2KGD A; 2M8L A; 2OTL P; 4U0C A; 3G71 P; 3WBH A; 2ONT A; 3NTE A; 2LIU A; 1VQL P; 3RG6 C; 3WHP A; 5C8D A; 1GPJ A; 4H2W C; 2MY5 A; 1Q6A A; 2MR8 A; 1YHQ P; 3CD6 P; 1E6J P; 2KOO A; 3I56 P; 1KD1 Q; 4HKG A; 4NEO A; 1DV5 A; 3HZQ A; 1GXG A; 1HQB A; 2AVA A; 4COC A; 1MZ8 A; #chains in the Genus database with same CATH homology 3DS0 A; 4X8Q A; 1QVF O; 1QVG O; 1Q82 Q; 1K30 A; 4IPY A; 3LRY A; 2PEN A; 3DS5 A; 3CME P; 1YIJ P; 1VQ6 P; 1UTU A; 2KOD A; 5F2O A; 1VQ4 P; 3DS2 A; 2JYL A; 3MGE A; 4XRO A; 1ZMB A; 3OW2 O; 4QNB A; 5BS2 A; 2BUO A; 2OTJ P; 1EIA A; 1EOQ A; 2JYG A; 2LF4 A; 3I55 P; 3CCM P; 1IUQ A; 1VQN P; 1YIT P; 3CXC O; 1YJ9 P; 1JJ2 O; 3CCE P; 3DS1 A; 1M74 A; 3L9T A; 1UZ3 A; 1VQ5 P; 4XFY A; 2M8N A; 2XV6 A; 1K8A Q; 4XFX A; 1Q7Y Q; 2PEI A; 5HGN A; 3CMA P; 3CPW O; 2P9X A; 1VQ9 P; 3G6E P; 2PEK A; 3HYB A; 1RO2 A; 3VRL C; 3CCU P; 3Q20 A; 4PH0 A; 1AUM A; 2PEJ A; 1RO0 A; 3CCJ P; 5F2N A; 1VQO P; 2DGY A; 3H47 A; 2FMM E; 3CCR P; 3G21 A; 2CWO A; 1YI2 P; 1YJN P; 1M6N A; 3DTJ A; 3H0D A; 5F2K A; 2M8P A; 4GR2 A; 2Z45 A; 4U0D A; 5DCK A; 1KQS O; 1VQ7 P; 1A43 A; 3CCL P; 1M90 Q; 2XXM A; 3CCQ P; 1KC8 Q; 3H4E A; 2EIA A; 3CCV P; 2BHV A; 4XRQ A; 3E2D A; 4U0F A; 3CC7 P; 2Z46 A; 2PEM A; 3CC2 P; 1M1K Q; 4GR6 A; 2JO0 A; 5BS1 A; 4WYM A; 3G29 A; 5JPA A; 2QA4 P; 2PY8 A; 1K9M Q; 2PBI A; 1VQM P; 5HGO A; 4PH1 A; 3DPH A; 2M8L A; 2OTL P; 1VQ8 P; 2XT1 A; 3G4S P; 3G28 A; 1VQK P; 3H20 A; 4U0C A; 3P05 A; 3B5I A; 4U0B A; 1VQP P; 2OAR A; 3G71 P; 2EG5 A; 3WBH A; 1QRJ A; 1A8O A; 2ONT A; 3DS4 A; 3NTE A; 3CCS P; 1VQL P; 3RG6 C; 4M0M A; 3DS3 A; 2Z44 A; 5HGL A; 1D1D A; 3G26 A; 3G1I A; 1S72 P; 1Q86 Q; 1K73 Q; 3G0V A; 5I4T G; 2PEQ A; 2QEX P; 1YHQ P; 1BAJ A; 3M1M A; 3CD6 P; 1E6J P; 4COP A; 3I56 P; 1KD1 Q; 3CC4 P; 1Q81 Q; 1NJI Q; 4U0E A; 5HGM A; 3HZQ A; 3G1G A; 4M0I A; 2E1M A; 2PEO A; 2L6E A; 4XFZ A; 1RNI A; 4COC A; 1YJW P; 1W2B O; 1N8R Q; 1M6E X; 2EFJ A; 4U0A A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
