1F93A

Crystal structure of a complex between the dimerization domain of hnf-1 alpha and the coactivator dcoh
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
103
structure length
103
Chain Sequence
AGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Rattus norvegicus
publication title Structural basis of dimerization, coactivator recognition and MODY3 mutations in HNF-1alpha.
pubmed doi rcsb
molecule keywords DIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
total genus 32
structure length 103
sequence length 103
chains with identical sequence B, C, D
ec nomenclature ec 4.2.1.96: 4a-hydroxytetrahydrobiopterin dehydratase.
pdb deposition date 2000-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1f93A00
1DCOA 4LOWA 2EBBA 1DCHA 1DCPA 2V6UA 1F93A 2V6TA 3JSTA 4C45A 2V6SA 4WILA 3HXAA 1RU0A 1USMA 1USOA
chains in the Genus database with same CATH superfamily
3S15K 5L46A 1JOEA 4LLGA 2NVTK 4A3CC 2WB1D 3OEPA 1GE9A 4A3LC 4RMFA 3GTMC 2P5MA 2B63A 4YFKA 3GTPK 1HQMA 2V6SA 3AD8C 4A3MC 3G4CA 3HKZL 3WODA 5C4JC 1WQGA 3K7AK 3AQPA 1VRQC 3H0GK 4AYBD 2FQOA 4QIWD 2JA8K 4KB4A 4X6AK 1XXBA 4A3IC 4O2DA 4KM9A 4KN7A 5IP7C 4A93C 1TWGK 4C2MC 1SFOA 1WQHA 3S0XA 4A3DC 3HOVK 5EGEA 3S1NC 3A8JA 5TMFA 2NVXA 3FKIC 4P5AA 3BUEA 5CHPA 2A68A 4YFNA 4OINA 4BY7C 2R7ZA 1O25A 4LR2A 1IL2A 1TWGA 2O5IA 1IBAA 2JA5K 1WOSA 4GTBA 4BLBA 4BBRC 1TWAK 4C3IC 1WOOA 5IYDK 4Y52C 1O26A 4QJVB 4WILA 1WOPA 2JH3A 4XSXA 2R93C 2GAHC 1ZVUA 5IYBC 3N3YA 5D4DA 3GTKC 1IE0A 2VUMK 2NVYC 2R92K 3NUHA 1TWHA 3GTGK 3HOWK 4G7ZA 1TWAA 1IQ0A 3S16C 1Y1VA 5C4XC 3LAJA 4BBSK 1VH2A 2B63C 2WAQD 3SZYA 3PO2C 4QIWL 2XCQA 4KMDA 1DCHA 2PPBA 3GTJA 3GTGA 3FHZA 3S17C 1HI9A 4KMUA 2NVTC 2JA6A 1J6WA 2A69A 1B4AA 3S1RK 4KDDA 2E2JC 1B4BA 4KARA 3HOUK 2GSUA 4PABA 1KQ4A 4GTLA 1XZPB 1F7UA 1WCMA 1I3QA 2ZUFA 4WJ4A 3T02A 3RZDK 4X6AC 3RZOC 1DD5A 3Q3QA 4JK1A 3GTQA 3AH5A 1TWGC 3CQZK 2JA7K 1F9NA 5FJ8K 4Q5SA 1I6HC 1VGXA 4YG2A 3IPJA 3LAPA 3DXJA 2XCOA 4C3HK 2YU9K 2ZUEA 3S14K 4MQ9A 4LK0A 4A3FC 2BE5A 2V6UA 1BJTA 1X31C 2V6TA 3M4OK 2Y0SL 4A3JK 5JFEA 4KAWX 2CFAA 3CQZA 3GSIA 1ZBSA 3OREA 2JA7A 3AD7C 3PO3C 5IP9K 1O27A 4KC6A 2GAGC 1TWHC 2PA8D 2P8TA 1XZPA 1O29A 4GTCA 4A3EK 4A3BK 2YU9A 1TWAC 5EGHA 1Y1VC 4LK1A 2WAQL 2E2IK 4KMAA 3I4NK 4Y7NC 1RU0A 2FQTA 4LQYA 4AH6A 1VJEA 2EBBA 1VLOA 4G7OA 3GTPA 2NVQK 3GTJC 3GTGC 1USOA 3S1QC 2JA6C 3L4KA 3HOWC 4GZYA 3JSTA 4ZH4A 3H0GA 5IYCC 1PJ7A 3HOZK 3HOYC 1XXAA 1JQWA 2E2HK 1WQFA 4OIQA 4BXXK 2E2IA 1TWCK 4LJZA 2O5JA 2PMZD 4XLPA 5FLMK 1BDFA 1YNJA 3S2HK 4BBSC 1C0AA 1XPPA 4KATA 3GTLK 1WIHA 3M3YK 4OIRA 4PAAA 4KM8A 1WCMC 4BY1K 1I3QC 3S1RC 5JVOA 3GTQC 1BGWA 1XXCA 4A3CK 1J6XA 4A3GC 5M5XK 3GTLA 3HOUC 1AB4A 1PJ5A 5C3EC 3GEEA 5HL8A 2JA5A 3GTMK 2A6HA 2Y0SD 2GSNA 3N0CA 1EK8A 4A3MK 3GDZA 5C4JK 3RZDC 4A3KC 3AQOA 4MEXA 1WSVA 2PA8L 1TWFK 3CQZC 2JA7C 5E68A 1SMYA 4C3JC 3S2DK 4FZBA 4G0VA 1J98A 1XZQB 2GSOA 2VUMA 2R92A 4MEYA 3GEHA 5FLMC 4C2MK 4C3HC 2YU9C 3S15C 4QJVA 3V4GA 4A3DK 3S1NK 4C45A 3M4OC 3TFIA 2XCRB 1TWFA 1O2AA 2ZFZA 3GEIA 5IP9C 3GTPC 4A3EC 4A3BC 1O24A 2PMZL 3K7AC 3H0GC 3FOFA 2W7VA 2E2IC 4G0UA 2D6FC 2JA8C 2KWAA 3I4NC 1I6VA 4Q4ZA 4C3IK 2Y3PA 3OPFA 4GFQA 1EQRA 4WJ3M 3ERED 5TJ3A 2NVQC 4GTAA 3HOVC 5IYBK 3GTKK 5C44K 1R9TK 4M1XA 3HOZC 4BXXC 1BS2A 1JVIA 1K83K 3S2HC 3H3VL 3S16K 3GTLC 1YNNA 3GTOK 3M3YC 2JA5C 3TFHA 1R9TA 3PO2K 4GTDA 5IYDC 3I4MK 4ILDA 4KN4A 3S1MK 1PJ6A 3A8KA 4KB2A 4NOIA 3S17K 1K83A 3A8IA 3ADAC 4XSZA 5IORA 1WORA 2E2JK 2VUMC 1O2FB 2R92C 3GTOA 3EQLA 1V5VA 1SFOK 3TFJA 5CJ9A 1Y1WK 2NVXK 1TWFC 1J6VA 3VA7A 3HOXK 3S2DC 3RZOK 4BKWA 1DCPA 2R7ZK 1I50K 2RH6A 3FOEA 4LOWA 3GIRA 3BP3A 1EFWA 4KASA 1I6HK 3AD9C 4FM9A 1USMA 1ZYRA 2E2HA 1Y1WA 1TWCA 4GTEA 4A3FK 4XCHA 4P9SA 4GT9A 5TMCA 4P5BA 4DDQA 1I50A 4A3LK 3H3VD 3HXAA 1EH1A 3PO3K 5M5WK 1TWHK 5M5YK 3TTGA 3L4JA 1Y1VK 2PHCB 4GTFA 4BLAA 4Y7NK 3G4AA 3SZZA 4A3IK 3MMLB 5C44C 1R9TC 3T01A 5IP7K 1ZQ1C 4A93K 1F7VA 4YFXA 3GTMA 2WB1L 3S14C 3GTJK 3S1QK 2CW0A 1L0WA 1K83C 1YX2A 2JA6K 5IYCK 3FKIK 1INNA 1ISEA 4G7HA 4A3JC 3HOYK 4G0WA 1G51A 3HKZD 4OIOA 4J3NA 3LPXA 3GTOC 4BY7K 3BP8C 1UV7A 1IS1A 4AYBL 4KMHA 3N0BA 3I4MC 3T00A 1IW7A 3S1MC 1EI6A 4OIPA 1O2BA 1WCMK 4BBRK 1I3QK 1YCLA 3FKIA 4Y52K 1XZQA 5IOSA 5IOQA 3GTQK 5M3FK 2R93K 1SFOC 4XLNA 3QX3A 4A3GK 5M3MK 5C3EK 2CFAB 2NVYK 2E2HC 1Y1WC 2NVXC 1TWCC 3CAGA 1O28A 3HOXC 4A3KK 2RGRA 2R7ZC 1I50C 5C4XK 2A6EA 1DCOA 2R93A 4C3JK 1WSRA 3GTKA 1F93A 2B63K 5IOTA 4BY1C 2NVYA 1ZXOA
chains in the Genus database with same CATH topology
1DCOA 4LOWA 2EBBA 1DCHA 1DCPA 2V6UA 1F93A 2V6TA 3JSTA 4C45A 2V6SA 4WILA 3HXAA 1RU0A 1USMA 1USOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DCO A;  4LOW A;  2EBB A;  1DCH A;  1DCP A;  2V6U A;  1F93 A;  2V6T A;  3JST A;  4C45 A;  2V6S A;  4WIL A;  3HXA A;  1RU0 A;  1USM A;  1USO A; 
#chains in the Genus database with same CATH topology
 3S15 K;  5L46 A;  1JOE A;  4LLG A;  2NVT K;  4A3C C;  2WB1 D;  3OEP A;  1GE9 A;  4A3L C;  4RMF A;  3GTM C;  2P5M A;  2B63 A;  4YFK A;  3GTP K;  1HQM A;  2V6S A;  3AD8 C;  4A3M C;  3G4C A;  3HKZ L;  3WOD A;  5C4J C;  1WQG A;  3K7A K;  3AQP A;  1VRQ C;  3H0G K;  4AYB D;  2FQO A;  4QIW D;  2JA8 K;  4KB4 A;  4X6A K;  1XXB A;  4A3I C;  4O2D A;  4KM9 A;  4KN7 A;  5IP7 C;  4A93 C;  1TWG K;  4C2M C;  1SFO A;  1WQH A;  3S0X A;  4A3D C;  3HOV K;  5EGE A;  3S1N C;  3A8J A;  5TMF A;  2NVX A;  3FKI C;  4P5A A;  3BUE A;  5CHP A;  2A68 A;  4YFN A;  4OIN A;  4BY7 C;  2R7Z A;  1O25 A;  4LR2 A;  1IL2 A;  1TWG A;  2O5I A;  1IBA A;  2JA5 K;  1WOS A;  4GTB A;  4BLB A;  4BBR C;  1TWA K;  4C3I C;  1WOO A;  5IYD K;  4Y52 C;  1O26 A;  4QJV B;  4WIL A;  1WOP A;  2JH3 A;  4XSX A;  2R93 C;  2GAH C;  1ZVU A;  5IYB C;  3N3Y A;  5D4D A;  3GTK C;  1IE0 A;  2VUM K;  2NVY C;  2R92 K;  3NUH A;  1TWH A;  3GTG K;  3HOW K;  4G7Z A;  1TWA A;  1IQ0 A;  3S16 C;  1Y1V A;  5C4X C;  3LAJ A;  4BBS K;  1VH2 A;  2B63 C;  2WAQ D;  3SZY A;  3PO2 C;  4QIW L;  2XCQ A;  4KMD A;  1DCH A;  2PPB A;  3GTJ A;  3GTG A;  3FHZ A;  3S17 C;  1HI9 A;  4KMU A;  2NVT C;  2JA6 A;  1J6W A;  2A69 A;  1B4A A;  3S1R K;  4KDD A;  2E2J C;  1B4B A;  4KAR A;  3HOU K;  2GSU A;  4PAB A;  1KQ4 A;  4GTL A;  1XZP B;  1F7U A;  1WCM A;  1I3Q A;  2ZUF A;  4WJ4 A;  3T02 A;  3RZD K;  4X6A C;  3RZO C;  1DD5 A;  3Q3Q A;  4JK1 A;  3GTQ A;  3AH5 A;  1TWG C;  3CQZ K;  2JA7 K;  1F9N A;  5FJ8 K;  4Q5S A;  1I6H C;  1VGX A;  4YG2 A;  3IPJ A;  3LAP A;  3DXJ A;  2XCO A;  4C3H K;  2YU9 K;  2ZUE A;  3S14 K;  4MQ9 A;  4LK0 A;  4A3F C;  2BE5 A;  2V6U A;  1BJT A;  1X31 C;  2V6T A;  3M4O K;  2Y0S L;  4A3J K;  5JFE A;  4KAW X;  2CFA A;  3CQZ A;  3GSI A;  1ZBS A;  3ORE A;  2JA7 A;  3AD7 C;  3PO3 C;  5IP9 K;  1O27 A;  4KC6 A;  2GAG C;  1TWH C;  2PA8 D;  2P8T A;  1XZP A;  1O29 A;  4GTC A;  4A3E K;  4A3B K;  2YU9 A;  1TWA C;  5EGH A;  1Y1V C;  4LK1 A;  2WAQ L;  2E2I K;  4KMA A;  3I4N K;  4Y7N C;  1RU0 A;  2FQT A;  4LQY A;  4AH6 A;  1VJE A;  2EBB A;  1VLO A;  4G7O A;  3GTP A;  2NVQ K;  3GTJ C;  3GTG C;  1USO A;  3S1Q C;  2JA6 C;  3L4K A;  3HOW C;  4GZY A;  3JST A;  4ZH4 A;  3H0G A;  5IYC C;  1PJ7 A;  3HOZ K;  3HOY C;  1XXA A;  1JQW A;  2E2H K;  1WQF A;  4OIQ A;  4BXX K;  2E2I A;  1TWC K;  4LJZ A;  2O5J A;  2PMZ D;  4XLP A;  5FLM K;  1BDF A;  1YNJ A;  3S2H K;  4BBS C;  1C0A A;  1XPP A;  4KAT A;  3GTL K;  1WIH A;  3M3Y K;  4OIR A;  4PAA A;  4KM8 A;  1WCM C;  4BY1 K;  1I3Q C;  3S1R C;  5JVO A;  3GTQ C;  1BGW A;  1XXC A;  4A3C K;  1J6X A;  4A3G C;  5M5X K;  3GTL A;  3HOU C;  1AB4 A;  1PJ5 A;  5C3E C;  3GEE A;  5HL8 A;  2JA5 A;  3GTM K;  2A6H A;  2Y0S D;  2GSN A;  3N0C A;  1EK8 A;  4A3M K;  3GDZ A;  5C4J K;  3RZD C;  4A3K C;  3AQO A;  4MEX A;  1WSV A;  2PA8 L;  1TWF K;  3CQZ C;  2JA7 C;  5E68 A;  1SMY A;  4C3J C;  3S2D K;  4FZB A;  4G0V A;  1J98 A;  1XZQ B;  2GSO A;  2VUM A;  2R92 A;  4MEY A;  3GEH A;  5FLM C;  4C2M K;  4C3H C;  2YU9 C;  3S15 C;  4QJV A;  3V4G A;  4A3D K;  3S1N K;  4C45 A;  3M4O C;  3TFI A;  2XCR B;  1TWF A;  1O2A A;  2ZFZ A;  3GEI A;  5IP9 C;  3GTP C;  4A3E C;  4A3B C;  1O24 A;  2PMZ L;  3K7A C;  3H0G C;  3FOF A;  2W7V A;  2E2I C;  4G0U A;  2D6F C;  2JA8 C;  2KWA A;  3I4N C;  1I6V A;  4Q4Z A;  4C3I K;  2Y3P A;  3OPF A;  4GFQ A;  1EQR A;  4WJ3 M;  3ERE D;  5TJ3 A;  2NVQ C;  4GTA A;  3HOV C;  5IYB K;  3GTK K;  5C44 K;  1R9T K;  4M1X A;  3HOZ C;  4BXX C;  1BS2 A;  1JVI A;  1K83 K;  3S2H C;  3H3V L;  3S16 K;  3GTL C;  1YNN A;  3GTO K;  3M3Y C;  2JA5 C;  3TFH A;  1R9T A;  3PO2 K;  4GTD A;  5IYD C;  3I4M K;  4ILD A;  4KN4 A;  3S1M K;  1PJ6 A;  3A8K A;  4KB2 A;  4NOI A;  3S17 K;  1K83 A;  3A8I A;  3ADA C;  4XSZ A;  5IOR A;  1WOR A;  2E2J K;  2VUM C;  1O2F B;  2R92 C;  3GTO A;  3EQL A;  1V5V A;  1SFO K;  3TFJ A;  5CJ9 A;  1Y1W K;  2NVX K;  1TWF C;  1J6V A;  3VA7 A;  3HOX K;  3S2D C;  3RZO K;  4BKW A;  1DCP A;  2R7Z K;  1I50 K;  2RH6 A;  3FOE A;  4LOW A;  3GIR A;  3BP3 A;  1EFW A;  4KAS A;  1I6H K;  3AD9 C;  4FM9 A;  1USM A;  1ZYR A;  2E2H A;  1Y1W A;  1TWC A;  4GTE A;  4A3F K;  4XCH A;  4P9S A;  4GT9 A;  5TMC A;  4P5B A;  4DDQ A;  1I50 A;  4A3L K;  3H3V D;  3HXA A;  1EH1 A;  3PO3 K;  5M5W K;  1TWH K;  5M5Y K;  3TTG A;  3L4J A;  1Y1V K;  2PHC B;  4GTF A;  4BLA A;  4Y7N K;  3G4A A;  3SZZ A;  4A3I K;  3MML B;  5C44 C;  1R9T C;  3T01 A;  5IP7 K;  1ZQ1 C;  4A93 K;  1F7V A;  4YFX A;  3GTM A;  2WB1 L;  3S14 C;  3GTJ K;  3S1Q K;  2CW0 A;  1L0W A;  1K83 C;  1YX2 A;  2JA6 K;  5IYC K;  3FKI K;  1INN A;  1ISE A;  4G7H A;  4A3J C;  3HOY K;  4G0W A;  1G51 A;  3HKZ D;  4OIO A;  4J3N A;  3LPX A;  3GTO C;  4BY7 K;  3BP8 C;  1UV7 A;  1IS1 A;  4AYB L;  4KMH A;  3N0B A;  3I4M C;  3T00 A;  1IW7 A;  3S1M C;  1EI6 A;  4OIP A;  1O2B A;  1WCM K;  4BBR K;  1I3Q K;  1YCL A;  3FKI A;  4Y52 K;  1XZQ A;  5IOS A;  5IOQ A;  3GTQ K;  5M3F K;  2R93 K;  1SFO C;  4XLN A;  3QX3 A;  4A3G K;  5M3M K;  5C3E K;  2CFA B;  2NVY K;  2E2H C;  1Y1W C;  2NVX C;  1TWC C;  3CAG A;  1O28 A;  3HOX C;  4A3K K;  2RGR A;  2R7Z C;  1I50 C;  5C4X K;  2A6E A;  1DCO A;  2R93 A;  4C3J K;  1WSR A;  3GTK A;  1F93 A;  2B63 K;  5IOT A;  4BY1 C;  2NVY A;  1ZXO A; 
#chains in the Genus database with same CATH homology
 1DCO A;  4LOW A;  2EBB A;  1DCH A;  1DCP A;  2V6U A;  1F93 A;  2V6T A;  3JST A;  4C45 A;  2V6S A;  4WIL A;  3HXA A;  1RU0 A;  1USM A;  1USO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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