1XZQB

Structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
117
Chain Sequence
MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 26
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzqB00
3GSIA 3TTGA 1WOPA 1WOSA 1WSRA 3GEEA 3GEIA 3TFHA 1PJ7A 1XZPB 3AD8C 2GAHC 1VRQC 1XZPA 1WOOA 3TFJA 1YX2A 4PABA 1X31C 3GIRA 4P9SA 1V5VA 3A8KA 2GAGC 1PJ5A 3AD7C 1XZQB 3ADAC 1WSVA 1XZQA 3A8JA 3TFIA 3A8IA 3AD9C 1PJ6A 3GEHA 1WORA 5L46A 1VLOA 4PAAA
chains in the Genus database with same CATH superfamily
4WJ4A 1WOSA 2NVQK 3GTOC 2R93C 1USOA 3GTJA 2PMZL 3VA7A 5IYDK 1VH2A 3PO3K 1TWFA 3HOWK 3TFJA 3AH5A 4PABA 1ISEA 3FHZA 4Y52C 1USMA 1TWAC 1F93A 2GSNA 4BBSC 2V6SA 2WB1D 1IBAA 1Y1WK 1F7UA 2YU9C 2EBBA 1I6HK 3HOVK 4A3BC 4DDQA 5TJ3A 4M1XA 2R7ZC 3GEIA 3S14C 1ZVUA 4G7ZA 2P8TA 4XSXA 4BY1K 3BP3A 1TWCK 1ZBSA 5IP7K 5M3MK 4C3JC 3T00A 4OIQA 2JA7A 3RZDK 3GTPA 5IORA 3GTLK 3S1RK 1JVIA 2CW0A 1G51A 2R93K 1J6VA 1PJ6A 3OEPA 2A68A 1SMYA 3RZOK 3H0GC 3S2DK 3FKIC 2A6HA 4PAAA 1BDFA 1SFOC 3HKZD 4KARA 1IE0A 4GTFA 1I50A 3HOZK 2BE5A 3AQOA 3IPJA 3HOYK 3HOUC 1IW7A 1YNNA 2YU9K 4A3BK 2A6EA 5IYCK 2B63A 3S14K 4G7HA 4ZH4A 1I3QC 1F7VA 1WCMC 4YFKA 2R92K 4GTEA 3K7AC 3PO2C 3H3VL 4XSZA 5HL8A 1EH1A 4BXXC 1BJTA 2ZUEA 1IS1A 3M3YK 1XXAA 5TMFA 1TWHA 3GTGA 3PO3C 3FKIK 4KAWX 3GTQA 3HOWC 1TWGC 3S2HK 3S1QK 3A8IA 3N0BA 1Y1VC 1VLOA 4XLPA 4A3JC 3GTKA 2JH3A 4KATA 4O2DA 4QJVB 1ZQ1C 1YNJA 3GTJC 3HXAA 2JA6A 1I6HC 4KASA 3HOVC 2NVYA 1XZPA 3GTQK 4BKWA 2JA5A 2NVXA 1I3QK 4GTDA 3L4KA 5IP7C 4G7OA 3GTKK 3GTMA 3T01A 4AYBL 4XLNA 3Q3QA 3RZDC 3K7AK 1YCLA 3GEHA 1XXBA 4MQ9A 3GTLC 3S1RC 2NVYK 1O24A 5C4JK 4BXXK 3OPFA 2GSUA 3LAJA 5EGHA 5IOSA 2NVXK 4KM9A 3CQZA 3AD8C 1O26A 3RZOC 1VRQC 3S2DC 4C2MC 2RGRA 1BGWA 1O25A 4WILA 2PA8D 2VUMK 1TWGK 2D6FC 1Y1VK 1V5VA 3DXJA 1PJ5A 4QIWD 4LJZA 3HOZC 4A3JK 3HOYC 4A3FK 3GTJK 5FLMC 4J3NA 5FJ8K 4RMFA 1TWFK 5IYCC 4A3DK 1F9NA 1PJ7A 4LK0A 4GTBA 1K83A 1VJEA 4C3HK 2GAHC 4A3CC 1I50C 4QJVA 3I4MC 2E2HA 4LK1A 2R92C 5M5YK 5C44K 5M5XK 4G0UA 4GTAA 4LR2A 4KDDA 3L4JA 4QIWL 3FOEA 4BY7K 1O2BA 3T02A 2B63C 3M3YC 1L0WA 5D4DA 4A93K 4G0WA 2WB1L 4OIRA 5CJ9A 1O27A 1O2AA 4YFNA 3GTOA 3HOXC 4C2MK 1O29A 1WIHA 2JA7K 3S2HC 3S1QC 1XZPB 4P5AA 3GTPK 4OINA 1ZXOA 4BBRK 4A3MC 4KN7A 4C3IC 4Y7NC 1TWHC 4GTLA 3GTGC 5FLMK 1AB4A 4KN4A 3S1NK 3GTQC 5IP9C 3S1MK 3BUEA 3FOFA 5JFEA 2CFAA 4Q5SA 1KQ4A 2ZUFA 2P5MA 2R7ZA 4A3CK 1I50K 3I4MK 3ERED 3GTKC 1HI9A 1IQ0A 3HKZL 4GT9A 2NVYC 5C4JC 2O5JA 2B63K 5EGEA 3S15K 2NVXC 1J98A 1VGXA 1JOEA 1B4BA 3HOXK 2VUMC 2PHCB 3NUHA 3TTGA 4KB2A 4KM8A 4A3MK 4C3IK 4Y7NK 4A3FC 1TWHK 3GTGK 5IYBK 2JA8C 1TWFC 5IP9K 4P5BA 4A3DC 1EI6A 2WAQD 5M3FK 4GZYA 5E68A 4C3HC 3WODA 2KWAA 3QX3A 5C44C 3AD9C 1WCMA 2V6TA 2W7VA 2JA6K 3GSIA 4NOIA 2PMZD 5C3EC 3SZYA 4X6AK 3MMLB 4BY7C 1WQGA 4A3GK 2JA5K 4A93C 2PPBA 4KMAA 2E2IA 3AQPA 2E2HC 5IOTA 3GTMK 2Y3PA 2XCQA 2JA7C 2GSOA 3GTPC 2WAQL 2NVTK 1RU0A 4KC6A 1XZQA 4YFXA 1EQRA 4BBRC 3LAPA 2ZFZA 2CFAB 3EQLA 2O5IA 2E2JK 1XXCA 4YG2A 2XCRB 3CQZK 1WOPA 1Y1WA 4KB4A 2JA8K 3S1NC 3LPXA 2FQTA 3S1MC 3M4OK 1DCHA 3SZZA 3S16C 4MEXA 2RH6A 4A3KK 1X31C 1B4AA 4A3LK 1TWCA 1O28A 2PA8L 4KMUA 1DCOA 5C3EK 4A3EC 1C0AA 3V4GA 1R9TA 5TMCA 3S15C 1K83K 3GTLA 3BP8C 1JQWA 1O2FB 4A3IK 2E2HK 4LOWA 3GEEA 2R93A 1UV7A 4GTCA 1J6WA 5CHPA 4OIPA 1R9TK 1TWAA 2GAGC 5IYBC 1GE9A 3A8JA 3GTOK 2YU9A 4BLBA 2Y0SD 3AD7C 4C45A 4LLGA 3H3VD 3I4NC 3S16K 4OIOA 4FM9A 1WQFA 5C4XC 4Y52K 1HQMA 3N0CA 3G4AA 1TWAK 1WQHA 4WJ3M 3JSTA 4JK1A 4BBSK 2R92A 2XCOA 1WOOA 2JA6C 5JVOA 4X6AC 4A3EK 1DD5A 1YX2A 5M5WK 1J6XA 4A3GC 4KMHA 2JA5C 1XZQB 3CAGA 2R7ZK 3TFIA 3GTMC 1EK8A 3H0GA 1EFWA 3FKIA 4C3JK 1SFOA 2NVTC 2Y0SL 1WSRA 4ILDA 4MEYA 3S17C 3TFHA 3N3YA 2FQOA 1ZYRA 2E2IC 2E2JC 3CQZC 1I6VA 2NVQC 4P9SA 3M4OC 5IYDC 3H0GK 4AYBD 3ADAC 1SFOK 3I4NK 4BLAA 5C4XK 4A3KC 2V6UA 4FZBA 4AH6A 1XPPA 4A3LC 1I3QA 3S0XA 2A69A 1Y1WC 3OREA 3HOUK 4KMDA 1IL2A 1K83C 3GDZA 4A3IC 1INNA 4GFQA 1BS2A 3GIRA 4BY1C 3A8KA 1TWCC 1WCMK 5IOQA 1WSVA 2VUMA 1TWGA 4XCHA 4Q4ZA 4G0VA 1Y1VA 3PO2K 1DCPA 3S17K 3G4CA 1R9TC 1WORA 4LQYA 5L46A 2E2IK
chains in the Genus database with same CATH topology
3GSIA 3TTGA 1WOPA 1WOSA 1WSRA 3GEEA 3GEIA 3TFHA 1PJ7A 1XZPB 3AD8C 2GAHC 1VRQC 1XZPA 1WOOA 3TFJA 1YX2A 4PABA 1X31C 3GIRA 4P9SA 1V5VA 3A8KA 2GAGC 1PJ5A 3AD7C 1XZQB 3ADAC 1WSVA 1XZQA 3A8JA 3TFIA 3A8IA 3AD9C 1PJ6A 3GEHA 1WORA 5L46A 1VLOA 4PAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GSI A;  3TTG A;  1WOP A;  1WOS A;  1WSR A;  3GEE A;  3GEI A;  3TFH A;  1PJ7 A;  1XZP B;  3AD8 C;  2GAH C;  1VRQ C;  1XZP A;  1WOO A;  3TFJ A;  1YX2 A;  4PAB A;  1X31 C;  3GIR A;  4P9S A;  1V5V A;  3A8K A;  2GAG C;  1PJ5 A;  3AD7 C;  1XZQ B;  3ADA C;  1WSV A;  1XZQ A;  3A8J A;  3TFI A;  3A8I A;  3AD9 C;  1PJ6 A;  3GEH A;  1WOR A;  5L46 A;  1VLO A;  4PAA A; 
#chains in the Genus database with same CATH topology
 4WJ4 A;  1WOS A;  2NVQ K;  3GTO C;  2R93 C;  1USO A;  3GTJ A;  2PMZ L;  3VA7 A;  5IYD K;  1VH2 A;  3PO3 K;  1TWF A;  3HOW K;  3TFJ A;  3AH5 A;  4PAB A;  1ISE A;  3FHZ A;  4Y52 C;  1USM A;  1TWA C;  1F93 A;  2GSN A;  4BBS C;  2V6S A;  2WB1 D;  1IBA A;  1Y1W K;  1F7U A;  2YU9 C;  2EBB A;  1I6H K;  3HOV K;  4A3B C;  4DDQ A;  5TJ3 A;  4M1X A;  2R7Z C;  3GEI A;  3S14 C;  1ZVU A;  4G7Z A;  2P8T A;  4XSX A;  4BY1 K;  3BP3 A;  1TWC K;  1ZBS A;  5IP7 K;  5M3M K;  4C3J C;  3T00 A;  4OIQ A;  2JA7 A;  3RZD K;  3GTP A;  5IOR A;  3GTL K;  3S1R K;  1JVI A;  2CW0 A;  1G51 A;  2R93 K;  1J6V A;  1PJ6 A;  3OEP A;  2A68 A;  1SMY A;  3RZO K;  3H0G C;  3S2D K;  3FKI C;  2A6H A;  4PAA A;  1BDF A;  1SFO C;  3HKZ D;  4KAR A;  1IE0 A;  4GTF A;  1I50 A;  3HOZ K;  2BE5 A;  3AQO A;  3IPJ A;  3HOY K;  3HOU C;  1IW7 A;  1YNN A;  2YU9 K;  4A3B K;  2A6E A;  5IYC K;  2B63 A;  3S14 K;  4G7H A;  4ZH4 A;  1I3Q C;  1F7V A;  1WCM C;  4YFK A;  2R92 K;  4GTE A;  3K7A C;  3PO2 C;  3H3V L;  4XSZ A;  5HL8 A;  1EH1 A;  4BXX C;  1BJT A;  2ZUE A;  1IS1 A;  3M3Y K;  1XXA A;  5TMF A;  1TWH A;  3GTG A;  3PO3 C;  3FKI K;  4KAW X;  3GTQ A;  3HOW C;  1TWG C;  3S2H K;  3S1Q K;  3A8I A;  3N0B A;  1Y1V C;  1VLO A;  4XLP A;  4A3J C;  3GTK A;  2JH3 A;  4KAT A;  4O2D A;  4QJV B;  1ZQ1 C;  1YNJ A;  3GTJ C;  3HXA A;  2JA6 A;  1I6H C;  4KAS A;  3HOV C;  2NVY A;  1XZP A;  3GTQ K;  4BKW A;  2JA5 A;  2NVX A;  1I3Q K;  4GTD A;  3L4K A;  5IP7 C;  4G7O A;  3GTK K;  3GTM A;  3T01 A;  4AYB L;  4XLN A;  3Q3Q A;  3RZD C;  3K7A K;  1YCL A;  3GEH A;  1XXB A;  4MQ9 A;  3GTL C;  3S1R C;  2NVY K;  1O24 A;  5C4J K;  4BXX K;  3OPF A;  2GSU A;  3LAJ A;  5EGH A;  5IOS A;  2NVX K;  4KM9 A;  3CQZ A;  3AD8 C;  1O26 A;  3RZO C;  1VRQ C;  3S2D C;  4C2M C;  2RGR A;  1BGW A;  1O25 A;  4WIL A;  2PA8 D;  2VUM K;  1TWG K;  2D6F C;  1Y1V K;  1V5V A;  3DXJ A;  1PJ5 A;  4QIW D;  4LJZ A;  3HOZ C;  4A3J K;  3HOY C;  4A3F K;  3GTJ K;  5FLM C;  4J3N A;  5FJ8 K;  4RMF A;  1TWF K;  5IYC C;  4A3D K;  1F9N A;  1PJ7 A;  4LK0 A;  4GTB A;  1K83 A;  1VJE A;  4C3H K;  2GAH C;  4A3C C;  1I50 C;  4QJV A;  3I4M C;  2E2H A;  4LK1 A;  2R92 C;  5M5Y K;  5C44 K;  5M5X K;  4G0U A;  4GTA A;  4LR2 A;  4KDD A;  3L4J A;  4QIW L;  3FOE A;  4BY7 K;  1O2B A;  3T02 A;  2B63 C;  3M3Y C;  1L0W A;  5D4D A;  4A93 K;  4G0W A;  2WB1 L;  4OIR A;  5CJ9 A;  1O27 A;  1O2A A;  4YFN A;  3GTO A;  3HOX C;  4C2M K;  1O29 A;  1WIH A;  2JA7 K;  3S2H C;  3S1Q C;  1XZP B;  4P5A A;  3GTP K;  4OIN A;  1ZXO A;  4BBR K;  4A3M C;  4KN7 A;  4C3I C;  4Y7N C;  1TWH C;  4GTL A;  3GTG C;  5FLM K;  1AB4 A;  4KN4 A;  3S1N K;  3GTQ C;  5IP9 C;  3S1M K;  3BUE A;  3FOF A;  5JFE A;  2CFA A;  4Q5S A;  1KQ4 A;  2ZUF A;  2P5M A;  2R7Z A;  4A3C K;  1I50 K;  3I4M K;  3ERE D;  3GTK C;  1HI9 A;  1IQ0 A;  3HKZ L;  4GT9 A;  2NVY C;  5C4J C;  2O5J A;  2B63 K;  5EGE A;  3S15 K;  2NVX C;  1J98 A;  1VGX A;  1JOE A;  1B4B A;  3HOX K;  2VUM C;  2PHC B;  3NUH A;  3TTG A;  4KB2 A;  4KM8 A;  4A3M K;  4C3I K;  4Y7N K;  4A3F C;  1TWH K;  3GTG K;  5IYB K;  2JA8 C;  1TWF C;  5IP9 K;  4P5B A;  4A3D C;  1EI6 A;  2WAQ D;  5M3F K;  4GZY A;  5E68 A;  4C3H C;  3WOD A;  2KWA A;  3QX3 A;  5C44 C;  3AD9 C;  1WCM A;  2V6T A;  2W7V A;  2JA6 K;  3GSI A;  4NOI A;  2PMZ D;  5C3E C;  3SZY A;  4X6A K;  3MML B;  4BY7 C;  1WQG A;  4A3G K;  2JA5 K;  4A93 C;  2PPB A;  4KMA A;  2E2I A;  3AQP A;  2E2H C;  5IOT A;  3GTM K;  2Y3P A;  2XCQ A;  2JA7 C;  2GSO A;  3GTP C;  2WAQ L;  2NVT K;  1RU0 A;  4KC6 A;  1XZQ A;  4YFX A;  1EQR A;  4BBR C;  3LAP A;  2ZFZ A;  2CFA B;  3EQL A;  2O5I A;  2E2J K;  1XXC A;  4YG2 A;  2XCR B;  3CQZ K;  1WOP A;  1Y1W A;  4KB4 A;  2JA8 K;  3S1N C;  3LPX A;  2FQT A;  3S1M C;  3M4O K;  1DCH A;  3SZZ A;  3S16 C;  4MEX A;  2RH6 A;  4A3K K;  1X31 C;  1B4A A;  4A3L K;  1TWC A;  1O28 A;  2PA8 L;  4KMU A;  1DCO A;  5C3E K;  4A3E C;  1C0A A;  3V4G A;  1R9T A;  5TMC A;  3S15 C;  1K83 K;  3GTL A;  3BP8 C;  1JQW A;  1O2F B;  4A3I K;  2E2H K;  4LOW A;  3GEE A;  2R93 A;  1UV7 A;  4GTC A;  1J6W A;  5CHP A;  4OIP A;  1R9T K;  1TWA A;  2GAG C;  5IYB C;  1GE9 A;  3A8J A;  3GTO K;  2YU9 A;  4BLB A;  2Y0S D;  3AD7 C;  4C45 A;  4LLG A;  3H3V D;  3I4N C;  3S16 K;  4OIO A;  4FM9 A;  1WQF A;  5C4X C;  4Y52 K;  1HQM A;  3N0C A;  3G4A A;  1TWA K;  1WQH A;  4WJ3 M;  3JST A;  4JK1 A;  4BBS K;  2R92 A;  2XCO A;  1WOO A;  2JA6 C;  5JVO A;  4X6A C;  4A3E K;  1DD5 A;  1YX2 A;  5M5W K;  1J6X A;  4A3G C;  4KMH A;  2JA5 C;  1XZQ B;  3CAG A;  2R7Z K;  3TFI A;  3GTM C;  1EK8 A;  3H0G A;  1EFW A;  3FKI A;  4C3J K;  1SFO A;  2NVT C;  2Y0S L;  1WSR A;  4ILD A;  4MEY A;  3S17 C;  3TFH A;  3N3Y A;  2FQO A;  1ZYR A;  2E2I C;  2E2J C;  3CQZ C;  1I6V A;  2NVQ C;  4P9S A;  3M4O C;  5IYD C;  3H0G K;  4AYB D;  3ADA C;  1SFO K;  3I4N K;  4BLA A;  5C4X K;  4A3K C;  2V6U A;  4FZB A;  4AH6 A;  1XPP A;  4A3L C;  1I3Q A;  3S0X A;  2A69 A;  1Y1W C;  3ORE A;  3HOU K;  4KMD A;  1IL2 A;  1K83 C;  3GDZ A;  4A3I C;  1INN A;  4GFQ A;  1BS2 A;  3GIR A;  4BY1 C;  3A8K A;  1TWC C;  1WCM K;  5IOQ A;  1WSV A;  2VUM A;  1TWG A;  4XCH A;  4Q4Z A;  4G0V A;  1Y1V A;  3PO2 K;  1DCP A;  3S17 K;  3G4C A;  1R9T C;  1WOR A;  4LQY A;  5L46 A;  2E2I K; 
#chains in the Genus database with same CATH homology
 3GSI A;  3TTG A;  1WOP A;  1WOS A;  1WSR A;  3GEE A;  3GEI A;  3TFH A;  1PJ7 A;  1XZP B;  3AD8 C;  2GAH C;  1VRQ C;  1XZP A;  1WOO A;  3TFJ A;  1YX2 A;  4PAB A;  1X31 C;  3GIR A;  4P9S A;  1V5V A;  3A8K A;  2GAG C;  1PJ5 A;  3AD7 C;  1XZQ B;  3ADA C;  1WSV A;  1XZQ A;  3A8J A;  3TFI A;  3A8I A;  3AD9 C;  1PJ6 A;  3GEH A;  1WOR A;  5L46 A;  1VLO A;  4PAA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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