1XZQB

Structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
117
Chain Sequence
MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
total genus 26
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzqB00
4PABA 1VRQC 3TTGA 4P9SA 3GIRA 3ADAC 1PJ5A 2GAGC 1WOOA 1XZPA 1WOPA 2GAHC 3TFHA 1WSRA 1XZQA 3TFJA 3A8JA 3AD7C 1PJ7A 1WSVA 3AD8C 1XZPB 3GEIA 1WOSA 3GEEA 1XZQB 3A8IA 3AD9C 3A8KA 1X31C 1VLOA 1V5VA 3GSIA 1WORA 1PJ6A 5L46A 3GEHA 3TFIA 4PAAA 1YX2A
chains in the Genus database with same CATH superfamily
5EGEA 4A3CC 2NVYC 1TWGC 3S2DK 2CW0A 2XCRB 4KN7A 1TWFC 4OIPA 3A8JA 2R93A 4X6AC 4AH6A 1K83C 4O2DA 3I4NK 4KASA 3GTQK 3PO3C 3GTGA 2JA6K 3GTMK 5IORA 2RGRA 1PJ6A 5L46A 4Y7NC 3BP8C 4A93C 4BKWA 1I50A 3S1RC 4A3GK 5CJ9A 2FQOA 2E2HK 4XCHA 1DCPA 4A3BK 4C3JK 3H3VL 1C0AA 4YFXA 1WIHA 3S1MK 3OEPA 1ZXOA 1XZQA 3GTLK 1YCLA 2V6TA 2YU9C 5FLMC 3V4GA 1BS2A 3GTMC 2R93C 4KB4A 2VUMK 3GTJA 4GTBA 4KMUA 2JA5A 3H0GK 3ERED 4G7ZA 1VRQC 3TTGA 5EGHA 1YNJA 1R9TA 3ADAC 2WB1L 2E2IA 4BY1C 2B63A 4QJVB 3HOWK 1WOPA 3H3VD 2JA5K 4P5AA 1Y1VC 2NVTC 4GTLA 4MEXA 2R92A 4C45A 1SFOK 2E2JK 1EK8A 4G0VA 4G0UA 1EQRA 4XLPA 3L4KA 4KMAA 4GTDA 4J3NA 2JA6C 5HL8A 1HQMA 3RZDK 3M4OC 2V6SA 1O2FB 3S17C 5D4DA 4BBSC 4RMFA 1WCMA 2ZFZA 4LR2A 4A3GC 2PPBA 1I50K 5TMCA 5CHPA 4GTFA 2NVXK 4A3BC 4Y52K 2GSOA 1UV7A 3S0XA 4A3KC 4C2MK 3T00A 4A3CK 3PO2C 3S1QK 2PA8D 3GTLC 3VA7A 1AB4A 3LPXA 4NOIA 2GSNA 1TWFK 5FLMK 2Y0SL 5M5YK 3I4NC 2GAGC 2R92C 4XLNA 2CFAA 5IYCC 4XSZA 1B4AA 4KATA 4Y52C 3HOVK 2WAQL 2A6HA 2JA8C 4A3KK 2E2IK 1R9TK 3BP3A 4FZBA 1DD5A 3EQLA 1J98A 3IPJA 5M5XK 4A3MC 1KQ4A 3GTJC 3Q3QA 1SFOC 4BBRK 3GTOC 4A3DC 2YU9K 4YFNA 1TWGK 3S2DC 5IYCK 1WQFA 1F9NA 2A68A 1TWCA 4GTAA 3HOZC 1TWCC 4LK0A 3HOYK 3RZDC 1Y1VA 1USMA 1VJEA 4GZYA 3A8KA 2JA7K 1BGWA 1J6VA 2O5JA 3AQOA 4Y7NK 4C3JC 4OINA 3HOXK 5IOSA 4BY7K 3G4AA 1SMYA 1I6HK 2B63K 1I6VA 4MEYA 3LAPA 4A3LK 2JA6A 1F93A 1EH1A 1O29A 3TFJA 3HOZK 4KMHA 2R93K 3CQZA 3AD8C 3HKZD 1TWFA 3GEIA 1WQHA 3G4CA 1F7VA 4XSXA 1GE9A 3AD9C 4KARA 4X6AK 1L0WA 2NVYA 3FKIK 3S1NK 1JVIA 3GTOA 3GTLA 2NVXA 3HKZL 2NVXC 2E2IC 2B63C 4A3LC 1I50C 4A93K 2WB1D 4G0WA 3S1RK 5IYBC 1INNA 3GTGC 2E2HC 5TMFA 1PJ7A 1WCMK 3DXJA 2KWAA 4KAWX 1TWAK 3SZZA 4BBRC 3N3YA 3GSIA 3GTMA 1IL2A 2YU9A 3N0CA 3GEHA 5C3EK 1O26A 3TFIA 1YX2A 4WJ4A 2VUMC 3L4JA 4AYBL 4QJVA 4BLAA 2R92K 4YFKA 4QIWD 2PMZD 3CQZK 3GIRA 3HOVC 5M3FK 2NVQC 1SFOA 4A3FK 3H0GC 4C3HK 3OPFA 1RU0A 1R9TC 2BE5A 3AD7C 3M3YK 1J6XA 1I6HC 1HI9A 3GTJK 1TWHC 3AQPA 1JOEA 3GDZA 3PO2K 3S1QC 4PAAA 4BLBA 4GFQA 4KC6A 2D6FC 4ZH4A 1XPPA 1TWCK 3FOFA 1TWGA 2GAHC 3FKIC 2ZUEA 2ZUFA 2JA7C 5JFEA 1G51A 4LJZA 3S17K 3S14K 4DDQA 2O5IA 3HOXC 4KM8A 4Q4ZA 1O28A 5IP7C 1VH2A 5E68A 4AYBD 4A3IK 3FKIA 2JH3A 4G7OA 2PMZL 4QIWL 5C44C 5IYDC 1IBAA 3HOUK 3FHZA 4G7HA 5TJ3A 3CAGA 3S2HK 4M1XA 2A6EA 3TFHA 3GTPK 5C4JK 1O25A 1WSVA 5IP9K 1Y1WK 1XXCA 1ISEA 1TWHA 3FOEA 1ZQ1C 1ZYRA 1WORA 3HOYC 1I3QK 3K7AK 3RZOK 3GTKA 5IP7K 4ILDA 4A3IC 1IS1A 2WAQD 4LOWA 1DCHA 3QX3A 2R7ZC 3S16K 1XXBA 2JA7A 1XZPA 4C3IK 4KN4A 4BY7C 1WSRA 4MQ9A 4A3DK 1XZPB 1ZBSA 1XZQB 1K83A 3I4MC 4WJ3M 1BJTA 5IOTA 4A3JC 1IQ0A 3S1NC 1EFWA 1I3QA 2XCOA 3GTKK 5C4XC 3HXAA 1VGXA 1TWHK 2GSUA 1DCOA 2XCQA 3OREA 5IYBK 3GTGK 3S1MC 3GTQA 1IW7A 3HOUC 3H0GA 3GEEA 1J6WA 1WCMC 1VLOA 1K83K 1TWAC 3S15C 4JK1A 1TWAA 4GTEA 4A3EK 4A3JK 4BXXC 5C3EC 2VUMA 5JVOA 4YG2A 4BY1K 3PO3K 4C3HC 3S14C 1BDFA 3CQZC 4OIRA 3M3YC 3NUHA 1I3QC 3K7AC 3RZOC 4OIQA 1O24A 2NVQK 4A3FC 3HOWC 2E2HA 2NVYK 2R7ZK 3S16C 5M5WK 1EI6A 1IE0A 3JSTA 2PHCB 3SZYA 5C44K 4Q5SA 4KMDA 2Y0SD 4A3EC 4KDDA 1JQWA 1Y1WA 3M4OK 4LK1A 1USOA 4PABA 3GTPC 4P9SA 4KM9A 3GTPA 1O2AA 4WILA 5IP9C 1F7UA 2P5MA 4LLGA 4GT9A 3LAJA 4OIOA 2CFAB 3A8IA 2Y3PA 1Y1VK 2NVTK 5FJ8K 3AH5A 2JA5C 2A69A 4C2MC 4C3IC 5M3MK 3S2HC 2E2JC 3I4MK 1PJ5A 5C4JC 3T02A 5IYDK 5IOQA 1WOOA 3BUEA 2EBBA 3S15K 3WODA 2W7VA 4BXXK 2FQTA 1O2BA 2JA8K 2R7ZA 4GTCA 1YNNA 4KB2A 4BBSK 3N0BA 1WOSA 2RH6A 3GTQC 2PA8L 1X31C 1Y1WC 4A3MK 1V5VA 5C4XK 4FM9A 2V6UA 3T01A 3GTKC 1WQGA 1XXAA 4LQYA 4P5BA 3GTOK 1ZVUA 1O27A 2P8TA 3MMLB 1B4BA
chains in the Genus database with same CATH topology
4PABA 1VRQC 3TTGA 4P9SA 3GIRA 3ADAC 1PJ5A 2GAGC 1WOOA 1XZPA 1WOPA 2GAHC 3TFHA 1WSRA 1XZQA 3TFJA 3A8JA 3AD7C 1PJ7A 1WSVA 3AD8C 1XZPB 3GEIA 1WOSA 3GEEA 1XZQB 3A8IA 3AD9C 3A8KA 1X31C 1VLOA 1V5VA 3GSIA 1WORA 1PJ6A 5L46A 3GEHA 3TFIA 4PAAA 1YX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PAB A;  1VRQ C;  3TTG A;  4P9S A;  3GIR A;  3ADA C;  1PJ5 A;  2GAG C;  1WOO A;  1XZP A;  1WOP A;  2GAH C;  3TFH A;  1WSR A;  1XZQ A;  3TFJ A;  3A8J A;  3AD7 C;  1PJ7 A;  1WSV A;  3AD8 C;  1XZP B;  3GEI A;  1WOS A;  3GEE A;  1XZQ B;  3A8I A;  3AD9 C;  3A8K A;  1X31 C;  1VLO A;  1V5V A;  3GSI A;  1WOR A;  1PJ6 A;  5L46 A;  3GEH A;  3TFI A;  4PAA A;  1YX2 A; 
#chains in the Genus database with same CATH topology
 5EGE A;  4A3C C;  2NVY C;  1TWG C;  3S2D K;  2CW0 A;  2XCR B;  4KN7 A;  1TWF C;  4OIP A;  3A8J A;  2R93 A;  4X6A C;  4AH6 A;  1K83 C;  4O2D A;  3I4N K;  4KAS A;  3GTQ K;  3PO3 C;  3GTG A;  2JA6 K;  3GTM K;  5IOR A;  2RGR A;  1PJ6 A;  5L46 A;  4Y7N C;  3BP8 C;  4A93 C;  4BKW A;  1I50 A;  3S1R C;  4A3G K;  5CJ9 A;  2FQO A;  2E2H K;  4XCH A;  1DCP A;  4A3B K;  4C3J K;  3H3V L;  1C0A A;  4YFX A;  1WIH A;  3S1M K;  3OEP A;  1ZXO A;  1XZQ A;  3GTL K;  1YCL A;  2V6T A;  2YU9 C;  5FLM C;  3V4G A;  1BS2 A;  3GTM C;  2R93 C;  4KB4 A;  2VUM K;  3GTJ A;  4GTB A;  4KMU A;  2JA5 A;  3H0G K;  3ERE D;  4G7Z A;  1VRQ C;  3TTG A;  5EGH A;  1YNJ A;  1R9T A;  3ADA C;  2WB1 L;  2E2I A;  4BY1 C;  2B63 A;  4QJV B;  3HOW K;  1WOP A;  3H3V D;  2JA5 K;  4P5A A;  1Y1V C;  2NVT C;  4GTL A;  4MEX A;  2R92 A;  4C45 A;  1SFO K;  2E2J K;  1EK8 A;  4G0V A;  4G0U A;  1EQR A;  4XLP A;  3L4K A;  4KMA A;  4GTD A;  4J3N A;  2JA6 C;  5HL8 A;  1HQM A;  3RZD K;  3M4O C;  2V6S A;  1O2F B;  3S17 C;  5D4D A;  4BBS C;  4RMF A;  1WCM A;  2ZFZ A;  4LR2 A;  4A3G C;  2PPB A;  1I50 K;  5TMC A;  5CHP A;  4GTF A;  2NVX K;  4A3B C;  4Y52 K;  2GSO A;  1UV7 A;  3S0X A;  4A3K C;  4C2M K;  3T00 A;  4A3C K;  3PO2 C;  3S1Q K;  2PA8 D;  3GTL C;  3VA7 A;  1AB4 A;  3LPX A;  4NOI A;  2GSN A;  1TWF K;  5FLM K;  2Y0S L;  5M5Y K;  3I4N C;  2GAG C;  2R92 C;  4XLN A;  2CFA A;  5IYC C;  4XSZ A;  1B4A A;  4KAT A;  4Y52 C;  3HOV K;  2WAQ L;  2A6H A;  2JA8 C;  4A3K K;  2E2I K;  1R9T K;  3BP3 A;  4FZB A;  1DD5 A;  3EQL A;  1J98 A;  3IPJ A;  5M5X K;  4A3M C;  1KQ4 A;  3GTJ C;  3Q3Q A;  1SFO C;  4BBR K;  3GTO C;  4A3D C;  2YU9 K;  4YFN A;  1TWG K;  3S2D C;  5IYC K;  1WQF A;  1F9N A;  2A68 A;  1TWC A;  4GTA A;  3HOZ C;  1TWC C;  4LK0 A;  3HOY K;  3RZD C;  1Y1V A;  1USM A;  1VJE A;  4GZY A;  3A8K A;  2JA7 K;  1BGW A;  1J6V A;  2O5J A;  3AQO A;  4Y7N K;  4C3J C;  4OIN A;  3HOX K;  5IOS A;  4BY7 K;  3G4A A;  1SMY A;  1I6H K;  2B63 K;  1I6V A;  4MEY A;  3LAP A;  4A3L K;  2JA6 A;  1F93 A;  1EH1 A;  1O29 A;  3TFJ A;  3HOZ K;  4KMH A;  2R93 K;  3CQZ A;  3AD8 C;  3HKZ D;  1TWF A;  3GEI A;  1WQH A;  3G4C A;  1F7V A;  4XSX A;  1GE9 A;  3AD9 C;  4KAR A;  4X6A K;  1L0W A;  2NVY A;  3FKI K;  3S1N K;  1JVI A;  3GTO A;  3GTL A;  2NVX A;  3HKZ L;  2NVX C;  2E2I C;  2B63 C;  4A3L C;  1I50 C;  4A93 K;  2WB1 D;  4G0W A;  3S1R K;  5IYB C;  1INN A;  3GTG C;  2E2H C;  5TMF A;  1PJ7 A;  1WCM K;  3DXJ A;  2KWA A;  4KAW X;  1TWA K;  3SZZ A;  4BBR C;  3N3Y A;  3GSI A;  3GTM A;  1IL2 A;  2YU9 A;  3N0C A;  3GEH A;  5C3E K;  1O26 A;  3TFI A;  1YX2 A;  4WJ4 A;  2VUM C;  3L4J A;  4AYB L;  4QJV A;  4BLA A;  2R92 K;  4YFK A;  4QIW D;  2PMZ D;  3CQZ K;  3GIR A;  3HOV C;  5M3F K;  2NVQ C;  1SFO A;  4A3F K;  3H0G C;  4C3H K;  3OPF A;  1RU0 A;  1R9T C;  2BE5 A;  3AD7 C;  3M3Y K;  1J6X A;  1I6H C;  1HI9 A;  3GTJ K;  1TWH C;  3AQP A;  1JOE A;  3GDZ A;  3PO2 K;  3S1Q C;  4PAA A;  4BLB A;  4GFQ A;  4KC6 A;  2D6F C;  4ZH4 A;  1XPP A;  1TWC K;  3FOF A;  1TWG A;  2GAH C;  3FKI C;  2ZUE A;  2ZUF A;  2JA7 C;  5JFE A;  1G51 A;  4LJZ A;  3S17 K;  3S14 K;  4DDQ A;  2O5I A;  3HOX C;  4KM8 A;  4Q4Z A;  1O28 A;  5IP7 C;  1VH2 A;  5E68 A;  4AYB D;  4A3I K;  3FKI A;  2JH3 A;  4G7O A;  2PMZ L;  4QIW L;  5C44 C;  5IYD C;  1IBA A;  3HOU K;  3FHZ A;  4G7H A;  5TJ3 A;  3CAG A;  3S2H K;  4M1X A;  2A6E A;  3TFH A;  3GTP K;  5C4J K;  1O25 A;  1WSV A;  5IP9 K;  1Y1W K;  1XXC A;  1ISE A;  1TWH A;  3FOE A;  1ZQ1 C;  1ZYR A;  1WOR A;  3HOY C;  1I3Q K;  3K7A K;  3RZO K;  3GTK A;  5IP7 K;  4ILD A;  4A3I C;  1IS1 A;  2WAQ D;  4LOW A;  1DCH A;  3QX3 A;  2R7Z C;  3S16 K;  1XXB A;  2JA7 A;  1XZP A;  4C3I K;  4KN4 A;  4BY7 C;  1WSR A;  4MQ9 A;  4A3D K;  1XZP B;  1ZBS A;  1XZQ B;  1K83 A;  3I4M C;  4WJ3 M;  1BJT A;  5IOT A;  4A3J C;  1IQ0 A;  3S1N C;  1EFW A;  1I3Q A;  2XCO A;  3GTK K;  5C4X C;  3HXA A;  1VGX A;  1TWH K;  2GSU A;  1DCO A;  2XCQ A;  3ORE A;  5IYB K;  3GTG K;  3S1M C;  3GTQ A;  1IW7 A;  3HOU C;  3H0G A;  3GEE A;  1J6W A;  1WCM C;  1VLO A;  1K83 K;  1TWA C;  3S15 C;  4JK1 A;  1TWA A;  4GTE A;  4A3E K;  4A3J K;  4BXX C;  5C3E C;  2VUM A;  5JVO A;  4YG2 A;  4BY1 K;  3PO3 K;  4C3H C;  3S14 C;  1BDF A;  3CQZ C;  4OIR A;  3M3Y C;  3NUH A;  1I3Q C;  3K7A C;  3RZO C;  4OIQ A;  1O24 A;  2NVQ K;  4A3F C;  3HOW C;  2E2H A;  2NVY K;  2R7Z K;  3S16 C;  5M5W K;  1EI6 A;  1IE0 A;  3JST A;  2PHC B;  3SZY A;  5C44 K;  4Q5S A;  4KMD A;  2Y0S D;  4A3E C;  4KDD A;  1JQW A;  1Y1W A;  3M4O K;  4LK1 A;  1USO A;  4PAB A;  3GTP C;  4P9S A;  4KM9 A;  3GTP A;  1O2A A;  4WIL A;  5IP9 C;  1F7U A;  2P5M A;  4LLG A;  4GT9 A;  3LAJ A;  4OIO A;  2CFA B;  3A8I A;  2Y3P A;  1Y1V K;  2NVT K;  5FJ8 K;  3AH5 A;  2JA5 C;  2A69 A;  4C2M C;  4C3I C;  5M3M K;  3S2H C;  2E2J C;  3I4M K;  1PJ5 A;  5C4J C;  3T02 A;  5IYD K;  5IOQ A;  1WOO A;  3BUE A;  2EBB A;  3S15 K;  3WOD A;  2W7V A;  4BXX K;  2FQT A;  1O2B A;  2JA8 K;  2R7Z A;  4GTC A;  1YNN A;  4KB2 A;  4BBS K;  3N0B A;  1WOS A;  2RH6 A;  3GTQ C;  2PA8 L;  1X31 C;  1Y1W C;  4A3M K;  1V5V A;  5C4X K;  4FM9 A;  2V6U A;  3T01 A;  3GTK C;  1WQG A;  1XXA A;  4LQY A;  4P5B A;  3GTO K;  1ZVU A;  1O27 A;  2P8T A;  3MML B;  1B4B A; 
#chains in the Genus database with same CATH homology
 4PAB A;  1VRQ C;  3TTG A;  4P9S A;  3GIR A;  3ADA C;  1PJ5 A;  2GAG C;  1WOO A;  1XZP A;  1WOP A;  2GAH C;  3TFH A;  1WSR A;  1XZQ A;  3TFJ A;  3A8J A;  3AD7 C;  1PJ7 A;  1WSV A;  3AD8 C;  1XZP B;  3GEI A;  1WOS A;  3GEE A;  1XZQ B;  3A8I A;  3AD9 C;  3A8K A;  1X31 C;  1VLO A;  1V5V A;  3GSI A;  1WOR A;  1PJ6 A;  5L46 A;  3GEH A;  3TFI A;  4PAA A;  1YX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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