1XZQB

Structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf
Total Genus 26
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
117
Chain Sequence
MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 26
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzqB00
3TFHA 3ADAC 3GEIA 3GIRA 3A8IA 3AD8C 1XZQB 1YX2A 3AD7C 5L46A 3A8JA 1X31C 1PJ5A 4P9SA 1VLOA 3GEEA 3GEHA 1XZPA 3AD9C 2GAGC 1WOSA 1WORA 1WSVA 3A8KA 1WOOA 1PJ7A 3GSIA 3TTGA 3TFIA 2GAHC 4PABA 1XZPB 1PJ6A 4PAAA 1VRQC 1WSRA 3TFJA 1WOPA 1XZQA 1V5VA
chains in the Genus database with same CATH superfamily
1Y1VC 4NOIA 3PO3K 5HL8A 5C3EK 1UV7A 5M5YK 3HOYK 4YFXA 3BP3A 5IOQA 4C3IK 2PMZD 3GTJA 1ZVUA 2R92C 5IP9C 1WOSA 4OIQA 3RZOK 2JA5A 5C44K 3N3YA 3S1NC 1I50K 4A3FK 3I4MC 3HOXC 3M4OC 4A3JK 1G51A 1WOPA 2NVYC 1V5VA 4RMFA 4XCHA 4GTAA 3S2DK 3PO3C 3H3VD 5C3EC 5IYCK 3HOYC 3V4GA 3OREA 4C3IC 5C4XK 5EGEA 2O5JA 4OIOA 3AD9C 1ZYRA 4C3HK 3RZOC 2E2JK 5FLMK 1WSVA 2NVXK 1SFOA 3G4AA 1O29A 4ZH4A 5C44C 1I50C 1PJ6A 4A3FC 3G4CA 4A3JC 5IYBK 3AQOA 1WIHA 1I6VA 1XZQA 1K83A 2B63K 1XPPA 3ADAC 3S1QK 3S2DC 3PO2K 5IYCC 3S17K 2ZUFA 3GEEA 4X6AK 1I3QK 5CJ9A 5C4JK 1O24A 1BGWA 2JH3A 2V6TA 3T01A 5FLMC 2E2JC 2NVXC 4PABA 4A93K 1EQRA 2B63C 5IYBC 4YG2A 3IPJA 1TWAC 4QIWD 3S1QC 1O27A 3AD8C 3PO2C 1RU0A 1XXBA 1WQHA 1WCMK 1VH2A 4KASA 1ZBSA 4X6AC 1TWHK 4MEYA 2E2HK 2R7ZA 1I3QC 2XCRB 4GZYA 4LQYA 4XLPA 5C4JC 2EBBA 3SZYA 1JQWA 4FM9A 5IP7K 4C45A 4YFNA 1VRQC 2CW0A 4XLNA 3FKIA 3HXAA 5M5WK 1J6XA 2PA8D 3HKZL 3GIRA 2ZFZA 1TWGK 4LJZA 4GT9A 4LLGA 3L4JA 4AYBL 4GTFA 3CQZA 3Q3QA 4OIPA 1INNA 1WCMC 1X31C 4P9SA 5M3FK 1USMA 1TWHC 2E2HC 2R92K 1WQFA 1DCOA 2JA7A 1TWFA 1JVIA 4QJVB 3TTGA 5IP7C 3LPXA 3S1NK 2R93K 1VGXA 4KMHA 3FOFA 4GTBA 3N0CA 1F9NA 2NVYK 3RZDC 1O26A 2WB1L 3GTPC 3GTOA 3WODA 1TWGC 3S0XA 1J6WA 3GTMA 4G7HA 2JA6C 1YNJA 1I6HK 4A3MK 1TWCA 3GEHA 2ZUEA 2RGRA 1YCLA 3HOUK 1J6VA 4KN4A 1EFWA 3H0GA 1O2FB 1WOOA 4Y52K 1SMYA 3T02A 2KWAA 2R93C 3DXJA 2VUMA 2XCOA 4A3IK 3GTLA 3CAGA 3NUHA 2E2IK 1F93A 1Y1VA 4C2MK 1SFOC 3GTQK 1I6HC 4A3MC 1VLOA 3T00A 5IOTA 3HOUC 3GTGK 1IE0A 1KQ4A 4Y52C 1F7UA 2Y0SD 3OPFA 4G7ZA 3TFJA 5M3MK 4ILDA 4Q4ZA 4A3IC 2WAQL 3S15K 4BY7K 4BKWA 4G0UA 1TWAK 1IBAA 2NVYA 2FQOA 4WILA 2E2IC 1AB4A 4A3GC 1J98A 5TMFA 2JA8K 4C2MC 1PJ5A 3GTQC 1VJEA 4A3CK 2YU9K 1DCPA 1Y1WK 4LOWA 1WORA 3GTGC 4XSZA 4OINA 1XZPB 4M1XA 3HOZK 3QX3A 3JSTA 3TFHA 3S15C 1I50A 4BY7C 4KN7A 4LR2A 2V6UA 3GTKC 1YX2A 4A3DK 1EI6A 1R9TK 3HOVC 2JA8C 2RH6A 2PMZL 2XCQA 4A3CC 2YU9C 1ZXOA 1Y1WC 3FOEA 4BY1K 3GSIA 3SZZA 2P8TA 3BUEA 1WSRA 4GTEA 2NVXA 3HOZC 4G0VA 3CQZC 3RZDK 1IW7A 3GTPK 3AH5A 2CFAB 3H3VL 4J3NA 2B63A 3GTJK 3S16K 1TWAA 4G7OA 4A3DC 2FQTA 2JA5K 1YNNA 1R9TC 2JA6K 2GSUA 4LK0A 4BY1C 1XXCA 3TFIA 1I3QA 2CFAA 4PAAA 3OEPA 1C0AA 1DCHA 1XXAA 3AQPA 1B4BA 4KB4A 3I4NK 5FJ8K 3A8IA 3GTJC 3S16C 4A3BC 2V6SA 3A8JA 2JA5C 4QJVA 1SFOK 1WCMA 3LAJA 4A3KK 3EQLA 1K83K 4P5AA 4Q5SA 5JVOA 4BBSC 1TWHA 2E2HA 4FZBA 1L0WA 1DD5A 5CHPA 3S1MK 4GFQA 3LAPA 4QIWL 5E68A 3I4NC 4GTCA 5TJ3A 4YFKA 3HOWK 3AD7C 3GTPA 4A3GK 5L46A 1TWGA 5IORA 1O28A 2NVTK 2JA6A 1O2AA 5IOSA 1USOA 3A8KA 4A3KC 1B4AA 1K83C 2A6HA 2W7VA 1EK8A 4O2DA 1EH1A 2GAHC 4KATA 2R92A 4OIRA 4C3JK 4A3EC 1ISEA 3HKZD 3S1MC 1ZQ1C 2R93A 2PA8L 3S2HK 4G0WA 3GDZA 4AYBD 2PPBA 1XZQB 1BJTA 5EGHA 3GTKK 2R7ZK 3M3YK 3HOWC 3HOVK 4KM8A 5IYDK 4KMDA 2GAGC 2NVTC 4WJ3M 1PJ7A 3FKIK 4LK1A 4AH6A 2A6EA 1BDFA 4XSXA 2D6FC 4C3JC 4KAWX 2O5IA 2WB1D 3CQZK 4KARA 4MQ9A 4WJ4A 2A68A 3VA7A 3S2HC 1GE9A 4BLAA 2R7ZC 3M3YC 2JA7K 1TWFK 3BP8C 1IL2A 5C4XC 2GSNA 5IYDC 2E2IA 1XZPA 4C3HC 4BLBA 4DDQA 3GTQA 1O2BA 4P5BA 3FKIC 5M5XK 3K7AK 4BXXK 3GTOK 1F7VA 5D4DA 4KB2A 2A69A 1O25A 3GTGA 3GTMK 4MEXA 5TMCA 3FHZA 1TWCK 4KMUA 4Y7NK 4JK1A 1IQ0A 3S14K 2GSOA 3L4KA 3S17C 2PHCB 4A3BK 3H0GK 2JA7C 1TWFC 3GTKA 3MMLB 4BBRK 3N0BA 4GTLA 2VUMK 1WQGA 5JFEA 3GTLK 2Y3PA 4A3LK 4BBSK 3K7AC 2YU9A 4BXXC 2Y0SL 1Y1WA 2NVQK 3S1RK 3GTOC 4A93C 2WAQD 1Y1VK 4KMAA 3GTMC 1JOEA 3GEIA 1BS2A 4KC6A 1TWCC 4Y7NC 3S14C 4KM9A 1HQMA 3H0GC 4BBRC 5IP9K 1R9TA 1HI9A 4KDDA 2VUMC 3ERED 3GTLC 4A3LC 2BE5A 3I4MK 1IS1A 3HOXK 3M4OK 2NVQC 3S1RC 2P5MA 4A3EK 4GTDA
chains in the Genus database with same CATH topology
3TFHA 3ADAC 3GEIA 3GIRA 3A8IA 3AD8C 1XZQB 1YX2A 3AD7C 5L46A 3A8JA 1X31C 1PJ5A 4P9SA 1VLOA 3GEEA 3GEHA 1XZPA 3AD9C 2GAGC 1WOSA 1WORA 1WSVA 3A8KA 1WOOA 1PJ7A 3GSIA 3TTGA 3TFIA 2GAHC 4PABA 1XZPB 1PJ6A 4PAAA 1VRQC 1WSRA 3TFJA 1WOPA 1XZQA 1V5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TFH A;  3ADA C;  3GEI A;  3GIR A;  3A8I A;  3AD8 C;  1XZQ B;  1YX2 A;  3AD7 C;  5L46 A;  3A8J A;  1X31 C;  1PJ5 A;  4P9S A;  1VLO A;  3GEE A;  3GEH A;  1XZP A;  3AD9 C;  2GAG C;  1WOS A;  1WOR A;  1WSV A;  3A8K A;  1WOO A;  1PJ7 A;  3GSI A;  3TTG A;  3TFI A;  2GAH C;  4PAB A;  1XZP B;  1PJ6 A;  4PAA A;  1VRQ C;  1WSR A;  3TFJ A;  1WOP A;  1XZQ A;  1V5V A; 
#chains in the Genus database with same CATH topology
 1Y1V C;  4NOI A;  3PO3 K;  5HL8 A;  5C3E K;  1UV7 A;  5M5Y K;  3HOY K;  4YFX A;  3BP3 A;  5IOQ A;  4C3I K;  2PMZ D;  3GTJ A;  1ZVU A;  2R92 C;  5IP9 C;  1WOS A;  4OIQ A;  3RZO K;  2JA5 A;  5C44 K;  3N3Y A;  3S1N C;  1I50 K;  4A3F K;  3I4M C;  3HOX C;  3M4O C;  4A3J K;  1G51 A;  1WOP A;  2NVY C;  1V5V A;  4RMF A;  4XCH A;  4GTA A;  3S2D K;  3PO3 C;  3H3V D;  5C3E C;  5IYC K;  3HOY C;  3V4G A;  3ORE A;  4C3I C;  5C4X K;  5EGE A;  2O5J A;  4OIO A;  3AD9 C;  1ZYR A;  4C3H K;  3RZO C;  2E2J K;  5FLM K;  1WSV A;  2NVX K;  1SFO A;  3G4A A;  1O29 A;  4ZH4 A;  5C44 C;  1I50 C;  1PJ6 A;  4A3F C;  3G4C A;  4A3J C;  5IYB K;  3AQO A;  1WIH A;  1I6V A;  1XZQ A;  1K83 A;  2B63 K;  1XPP A;  3ADA C;  3S1Q K;  3S2D C;  3PO2 K;  5IYC C;  3S17 K;  2ZUF A;  3GEE A;  4X6A K;  1I3Q K;  5CJ9 A;  5C4J K;  1O24 A;  1BGW A;  2JH3 A;  2V6T A;  3T01 A;  5FLM C;  2E2J C;  2NVX C;  4PAB A;  4A93 K;  1EQR A;  2B63 C;  5IYB C;  4YG2 A;  3IPJ A;  1TWA C;  4QIW D;  3S1Q C;  1O27 A;  3AD8 C;  3PO2 C;  1RU0 A;  1XXB A;  1WQH A;  1WCM K;  1VH2 A;  4KAS A;  1ZBS A;  4X6A C;  1TWH K;  4MEY A;  2E2H K;  2R7Z A;  1I3Q C;  2XCR B;  4GZY A;  4LQY A;  4XLP A;  5C4J C;  2EBB A;  3SZY A;  1JQW A;  4FM9 A;  5IP7 K;  4C45 A;  4YFN A;  1VRQ C;  2CW0 A;  4XLN A;  3FKI A;  3HXA A;  5M5W K;  1J6X A;  2PA8 D;  3HKZ L;  3GIR A;  2ZFZ A;  1TWG K;  4LJZ A;  4GT9 A;  4LLG A;  3L4J A;  4AYB L;  4GTF A;  3CQZ A;  3Q3Q A;  4OIP A;  1INN A;  1WCM C;  1X31 C;  4P9S A;  5M3F K;  1USM A;  1TWH C;  2E2H C;  2R92 K;  1WQF A;  1DCO A;  2JA7 A;  1TWF A;  1JVI A;  4QJV B;  3TTG A;  5IP7 C;  3LPX A;  3S1N K;  2R93 K;  1VGX A;  4KMH A;  3FOF A;  4GTB A;  3N0C A;  1F9N A;  2NVY K;  3RZD C;  1O26 A;  2WB1 L;  3GTP C;  3GTO A;  3WOD A;  1TWG C;  3S0X A;  1J6W A;  3GTM A;  4G7H A;  2JA6 C;  1YNJ A;  1I6H K;  4A3M K;  1TWC A;  3GEH A;  2ZUE A;  2RGR A;  1YCL A;  3HOU K;  1J6V A;  4KN4 A;  1EFW A;  3H0G A;  1O2F B;  1WOO A;  4Y52 K;  1SMY A;  3T02 A;  2KWA A;  2R93 C;  3DXJ A;  2VUM A;  2XCO A;  4A3I K;  3GTL A;  3CAG A;  3NUH A;  2E2I K;  1F93 A;  1Y1V A;  4C2M K;  1SFO C;  3GTQ K;  1I6H C;  4A3M C;  1VLO A;  3T00 A;  5IOT A;  3HOU C;  3GTG K;  1IE0 A;  1KQ4 A;  4Y52 C;  1F7U A;  2Y0S D;  3OPF A;  4G7Z A;  3TFJ A;  5M3M K;  4ILD A;  4Q4Z A;  4A3I C;  2WAQ L;  3S15 K;  4BY7 K;  4BKW A;  4G0U A;  1TWA K;  1IBA A;  2NVY A;  2FQO A;  4WIL A;  2E2I C;  1AB4 A;  4A3G C;  1J98 A;  5TMF A;  2JA8 K;  4C2M C;  1PJ5 A;  3GTQ C;  1VJE A;  4A3C K;  2YU9 K;  1DCP A;  1Y1W K;  4LOW A;  1WOR A;  3GTG C;  4XSZ A;  4OIN A;  1XZP B;  4M1X A;  3HOZ K;  3QX3 A;  3JST A;  3TFH A;  3S15 C;  1I50 A;  4BY7 C;  4KN7 A;  4LR2 A;  2V6U A;  3GTK C;  1YX2 A;  4A3D K;  1EI6 A;  1R9T K;  3HOV C;  2JA8 C;  2RH6 A;  2PMZ L;  2XCQ A;  4A3C C;  2YU9 C;  1ZXO A;  1Y1W C;  3FOE A;  4BY1 K;  3GSI A;  3SZZ A;  2P8T A;  3BUE A;  1WSR A;  4GTE A;  2NVX A;  3HOZ C;  4G0V A;  3CQZ C;  3RZD K;  1IW7 A;  3GTP K;  3AH5 A;  2CFA B;  3H3V L;  4J3N A;  2B63 A;  3GTJ K;  3S16 K;  1TWA A;  4G7O A;  4A3D C;  2FQT A;  2JA5 K;  1YNN A;  1R9T C;  2JA6 K;  2GSU A;  4LK0 A;  4BY1 C;  1XXC A;  3TFI A;  1I3Q A;  2CFA A;  4PAA A;  3OEP A;  1C0A A;  1DCH A;  1XXA A;  3AQP A;  1B4B A;  4KB4 A;  3I4N K;  5FJ8 K;  3A8I A;  3GTJ C;  3S16 C;  4A3B C;  2V6S A;  3A8J A;  2JA5 C;  4QJV A;  1SFO K;  1WCM A;  3LAJ A;  4A3K K;  3EQL A;  1K83 K;  4P5A A;  4Q5S A;  5JVO A;  4BBS C;  1TWH A;  2E2H A;  4FZB A;  1L0W A;  1DD5 A;  5CHP A;  3S1M K;  4GFQ A;  3LAP A;  4QIW L;  5E68 A;  3I4N C;  4GTC A;  5TJ3 A;  4YFK A;  3HOW K;  3AD7 C;  3GTP A;  4A3G K;  5L46 A;  1TWG A;  5IOR A;  1O28 A;  2NVT K;  2JA6 A;  1O2A A;  5IOS A;  1USO A;  3A8K A;  4A3K C;  1B4A A;  1K83 C;  2A6H A;  2W7V A;  1EK8 A;  4O2D A;  1EH1 A;  2GAH C;  4KAT A;  2R92 A;  4OIR A;  4C3J K;  4A3E C;  1ISE A;  3HKZ D;  3S1M C;  1ZQ1 C;  2R93 A;  2PA8 L;  3S2H K;  4G0W A;  3GDZ A;  4AYB D;  2PPB A;  1XZQ B;  1BJT A;  5EGH A;  3GTK K;  2R7Z K;  3M3Y K;  3HOW C;  3HOV K;  4KM8 A;  5IYD K;  4KMD A;  2GAG C;  2NVT C;  4WJ3 M;  1PJ7 A;  3FKI K;  4LK1 A;  4AH6 A;  2A6E A;  1BDF A;  4XSX A;  2D6F C;  4C3J C;  4KAW X;  2O5I A;  2WB1 D;  3CQZ K;  4KAR A;  4MQ9 A;  4WJ4 A;  2A68 A;  3VA7 A;  3S2H C;  1GE9 A;  4BLA A;  2R7Z C;  3M3Y C;  2JA7 K;  1TWF K;  3BP8 C;  1IL2 A;  5C4X C;  2GSN A;  5IYD C;  2E2I A;  1XZP A;  4C3H C;  4BLB A;  4DDQ A;  3GTQ A;  1O2B A;  4P5B A;  3FKI C;  5M5X K;  3K7A K;  4BXX K;  3GTO K;  1F7V A;  5D4D A;  4KB2 A;  2A69 A;  1O25 A;  3GTG A;  3GTM K;  4MEX A;  5TMC A;  3FHZ A;  1TWC K;  4KMU A;  4Y7N K;  4JK1 A;  1IQ0 A;  3S14 K;  2GSO A;  3L4K A;  3S17 C;  2PHC B;  4A3B K;  3H0G K;  2JA7 C;  1TWF C;  3GTK A;  3MML B;  4BBR K;  3N0B A;  4GTL A;  2VUM K;  1WQG A;  5JFE A;  3GTL K;  2Y3P A;  4A3L K;  4BBS K;  3K7A C;  2YU9 A;  4BXX C;  2Y0S L;  1Y1W A;  2NVQ K;  3S1R K;  3GTO C;  4A93 C;  2WAQ D;  1Y1V K;  4KMA A;  3GTM C;  1JOE A;  3GEI A;  1BS2 A;  4KC6 A;  1TWC C;  4Y7N C;  3S14 C;  4KM9 A;  1HQM A;  3H0G C;  4BBR C;  5IP9 K;  1R9T A;  1HI9 A;  4KDD A;  2VUM C;  3ERE D;  3GTL C;  4A3L C;  2BE5 A;  3I4M K;  1IS1 A;  3HOX K;  3M4O K;  2NVQ C;  3S1R C;  2P5M A;  4A3E K;  4GTD A; 
#chains in the Genus database with same CATH homology
 3TFH A;  3ADA C;  3GEI A;  3GIR A;  3A8I A;  3AD8 C;  1XZQ B;  1YX2 A;  3AD7 C;  5L46 A;  3A8J A;  1X31 C;  1PJ5 A;  4P9S A;  1VLO A;  3GEE A;  3GEH A;  1XZP A;  3AD9 C;  2GAG C;  1WOS A;  1WOR A;  1WSV A;  3A8K A;  1WOO A;  1PJ7 A;  3GSI A;  3TTG A;  3TFI A;  2GAH C;  4PAB A;  1XZP B;  1PJ6 A;  4PAA A;  1VRQ C;  1WSR A;  3TFJ A;  1WOP A;  1XZQ A;  1V5V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...