1XZQB

Structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
117
Chain Sequence
MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
total genus 26
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzqB00
3A8IA 4PABA 3A8KA 1WOPA 3A8JA 4P9SA 1WSVA 5L46A 1PJ7A 1VLOA 1VRQC 3ADAC 1XZQB 1YX2A 3GEHA 3GIRA 1WOOA 4PAAA 3GEEA 1WOSA 3TTGA 1WORA 1WSRA 2GAHC 3AD7C 3TFJA 3GEIA 3TFHA 3GSIA 1XZPB 3TFIA 3AD9C 2GAGC 3AD8C 1XZQA 1XZPA 1PJ6A 1X31C 1V5VA 1PJ5A
chains in the Genus database with same CATH superfamily
2P8TA 4A3KC 2R7ZK 3GTQA 1ZXOA 4A3GK 3S0XA 1I50A 3OPFA 3WODA 3S2DK 4PAAA 3AQOA 4A93C 3GTJA 4OINA 1K83C 1O2FB 5JFEA 5FLMC 4X6AC 4ZH4A 2NVXA 3EQLA 2GSUA 3V4GA 3QX3A 4BBRK 1Y1WK 2E2IC 2A6HA 5IYBK 1F9NA 2ZFZA 2O5JA 3AD9C 4YFKA 1TWFC 4BLBA 1IE0A 1XZQA 1XZPA 4KMUA 1VH2A 2YU9C 3NUHA 4A3CK 4BKWA 1UV7A 1BDFA 4MEXA 1JVIA 3ERED 3GTMA 1INNA 1Y1WA 1R9TC 3ADAC 3HKZD 3GTKC 4P5BA 3H3VL 2NVYK 1YNJA 3HOVC 1IQ0A 3TFHA 2JA8C 3HOVK 4A3IC 3CQZC 4A3EC 5IP9C 1EFWA 3S14C 2WAQD 3A8JA 3GTKK 4G7OA 1BJTA 2Y0SD 4GTLA 2E2HK 1R9TA 3RZDK 4A3BC 4QIWD 4AH6A 1SMYA 3GTJK 4XLNA 4GTCA 1YNNA 2YU9A 3FOEA 1TWAK 1I3QK 1WIHA 5IOTA 4MEYA 1TWFK 3GEIA 1I6HC 3IPJA 2PHCB 3S2HK 4C3HK 4WILA 1EK8A 3GTPC 3G4CA 1YCLA 3FKIA 4YFNA 1WOPA 2NVQC 5C4JK 1F7VA 3GTMK 3S15K 2D6FC 1F7UA 1L0WA 1VRQC 1KQ4A 1XZQB 5C3EK 2JA6K 3AQPA 3GTQC 5EGEA 3GTLK 1IBAA 1TWCK 3FHZA 1JQWA 3OREA 4M1XA 1AB4A 2E2HA 2NVTC 3PO2C 3VA7A 2JA6A 1WQGA 4XSZA 4C3IK 2JA5A 1O2BA 1EI6A 3Q3QA 1O25A 3S1MC 3LPXA 1VGXA 2E2HC 5TMFA 4A3DK 3S1RC 3DXJA 2PA8L 4KARA 2CFAB 1Y1WC 2R93A 3GEHA 5TMCA 4BY7C 2VUMA 1ZVUA 1K83K 4X6AK 1WSRA 1TWHC 3GTQK 1J98A 5C3EC 3GTKA 3CQZK 1I3QA 3K7AK 2VUMC 4BXXC 5M5WK 4QJVB 2PMZD 4P5AA 3I4MC 3BP3A 4OIPA 2FQTA 3S2HC 2NVXC 4KDDA 3MMLB 5M5YK 1WOOA 1TWAC 4GTBA 1I6VA 5M3MK 1SFOA 1J6WA 4A3CC 1B4AA 4A3FK 1TWCA 3AD7C 1ISEA 3S1QC 1J6XA 2ZUFA 1DCOA 4KM8A 1I50C 3TFIA 2E2IK 2WB1D 1IW7A 1X31C 1WCMK 4OIOA 5M5XK 1SFOK 3A8IA 3N0CA 4P9SA 1F93A 3SZZA 3H0GA 3FKIC 4KAWX 5TJ3A 4A3GC 1TWGA 3GTPA 1YX2A 4OIRA 1WORA 4WJ3M 2GAHC 4A3JK 4A3JC 3HXAA 3RZOC 1R9TK 2E2JK 1PJ6A 2JA5K 1V5VA 4GTFA 2NVYA 2V6TA 2YU9K 4A3MK 5JVOA 3M3YC 1TWFA 5FJ8K 4BBSK 3HOZC 3N3YA 1BS2A 5EGHA 4G0VA 4C2MC 2FQOA 2R93K 1DCPA 4A3LC 1O27A 2R93C 4LK0A 3L4JA 3H3VD 3GTOC 3M3YK 3S1NK 4DDQA 1IL2A 3JSTA 3GDZA 5IP7K 1USOA 3LAPA 2XCRB 1JOEA 4A3KK 2R7ZC 2PMZL 1Y1VK 5C4XC 5M3FK 3LAJA 2V6UA 2JA7K 4KB4A 4QJVA 4GTAA 2GSOA 4GFQA 3HOYC 2Y0SL 1WQHA 3I4NC 3GEEA 2R92K 4OIQA 3M4OK 5IP7C 2B63K 2B63A 1XXCA 2BE5A 5IOSA 4ILDA 3AD8C 2PPBA 3T00A 4G7HA 4G0UA 3TFJA 5IOQA 4KMAA 4PABA 4Y52C 1K83A 1Y1VA 3S1RK 2V6SA 5E68A 3HOZK 4BBSC 5IYDC 1O26A 4BY1K 3AH5A 1G51A 2JA5C 1DD5A 1B4BA 1RU0A 3GIRA 1HI9A 2R92A 4LOWA 3S16K 3GTGA 4C3JK 3GSIA 3N0BA 5C44C 2CW0A 4G7ZA 1PJ5A 4Y7NK 3HOUK 4KASA 3GTGC 2XCQA 4O2DA 3S17K 2WAQL 3CAGA 3CQZA 1TWAA 4GTDA 4XCHA 3S1NC 4BY1C 2JA7A 2A68A 5C4JC 5IYCK 2ZUEA 1C0AA 1SFOC 3T02A 2RGRA 5CHPA 4AYBD 4C3HC 4Q4ZA 4Y52K 4C2MK 1XXAA 4A3DC 4GTEA 1I3QC 5IYCC 3BUEA 4A3FC 4MQ9A 3H0GK 3PO3K 3G4AA 3S17C 1TWHA 2B63C 1IS1A 2XCOA 4LK1A 3PO2K 2NVTK 3GTLA 4NOIA 2NVXK 3RZOK 4XLPA 3HOYK 5D4DA 5C44K 2E2IA 2KWAA 4C45A 2JA7C 3I4MK 2VUMK 2JA6C 4YFXA 4A3EK 3TTGA 3S16C 3FKIK 1O28A 3H0GC 1HQMA 2GAGC 4Q5SA 4FM9A 4BY7K 1WCMA 1GE9A 3HOXK 2WB1L 3HOXC 3T01A 3S1MK 4QIWL 4GZYA 2PA8D 1O24A 3GTGK 3M4OC 2R92C 4LR2A 3FOFA 1VJEA 4BLAA 4BBRC 2EBBA 4C3JC 4BXXK 5C4XK 4A93K 3K7AC 1Y1VC 4YG2A 4A3IK 5HL8A 2A69A 2JA8K 3OEPA 3PO3C 5L46A 1XPPA 1VLOA 3GTPK 4XSXA 1EQRA 1DCHA 4AYBL 4FZBA 1WCMC 5CJ9A 1I50K 4G0WA 2A6EA 1TWGK 1ZQ1C 3GTOA 2O5IA 4A3MC 2R7ZA 4Y7NC 3HOUC 1ZYRA 2P5MA 1USMA 3I4NK 3HKZL 4KN7A 1J6VA 4KATA 3GTLC 2Y3PA 2GSNA 3HOWK 1EH1A 1WOSA 2W7VA 4KC6A 1BGWA 2JH3A 3S15C 4KMDA 1O29A 3GTMC 2NVQK 2NVYC 1WQFA 5IYDK 3GTOK 3HOWC 4LQYA 1TWHK 4JK1A 4GT9A 4LLGA 4LJZA 3A8KA 2RH6A 4A3LK 1I6HK 5IORA 1WSVA 4WJ4A 2CFAA 4KM9A 1PJ7A 3BP8C 3S1QK 3GTJC 4J3NA 1ZBSA 1TWGC 4KN4A 3RZDC 4A3BK 3SZYA 4KMHA 4C3IC 3L4KA 4KB2A 5IYBC 2E2JC 3S14K 1XZPB 1XXBA 5FLMK 1O2AA 5IP9K 4RMFA 3S2DC 1TWCC
chains in the Genus database with same CATH topology
3A8IA 4PABA 3A8KA 1WOPA 3A8JA 4P9SA 1WSVA 5L46A 1PJ7A 1VLOA 1VRQC 3ADAC 1XZQB 1YX2A 3GEHA 3GIRA 1WOOA 4PAAA 3GEEA 1WOSA 3TTGA 1WORA 1WSRA 2GAHC 3AD7C 3TFJA 3GEIA 3TFHA 3GSIA 1XZPB 3TFIA 3AD9C 2GAGC 3AD8C 1XZQA 1XZPA 1PJ6A 1X31C 1V5VA 1PJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A8I A;  4PAB A;  3A8K A;  1WOP A;  3A8J A;  4P9S A;  1WSV A;  5L46 A;  1PJ7 A;  1VLO A;  1VRQ C;  3ADA C;  1XZQ B;  1YX2 A;  3GEH A;  3GIR A;  1WOO A;  4PAA A;  3GEE A;  1WOS A;  3TTG A;  1WOR A;  1WSR A;  2GAH C;  3AD7 C;  3TFJ A;  3GEI A;  3TFH A;  3GSI A;  1XZP B;  3TFI A;  3AD9 C;  2GAG C;  3AD8 C;  1XZQ A;  1XZP A;  1PJ6 A;  1X31 C;  1V5V A;  1PJ5 A; 
#chains in the Genus database with same CATH topology
 2P8T A;  4A3K C;  2R7Z K;  3GTQ A;  1ZXO A;  4A3G K;  3S0X A;  1I50 A;  3OPF A;  3WOD A;  3S2D K;  4PAA A;  3AQO A;  4A93 C;  3GTJ A;  4OIN A;  1K83 C;  1O2F B;  5JFE A;  5FLM C;  4X6A C;  4ZH4 A;  2NVX A;  3EQL A;  2GSU A;  3V4G A;  3QX3 A;  4BBR K;  1Y1W K;  2E2I C;  2A6H A;  5IYB K;  1F9N A;  2ZFZ A;  2O5J A;  3AD9 C;  4YFK A;  1TWF C;  4BLB A;  1IE0 A;  1XZQ A;  1XZP A;  4KMU A;  1VH2 A;  2YU9 C;  3NUH A;  4A3C K;  4BKW A;  1UV7 A;  1BDF A;  4MEX A;  1JVI A;  3ERE D;  3GTM A;  1INN A;  1Y1W A;  1R9T C;  3ADA C;  3HKZ D;  3GTK C;  4P5B A;  3H3V L;  2NVY K;  1YNJ A;  3HOV C;  1IQ0 A;  3TFH A;  2JA8 C;  3HOV K;  4A3I C;  3CQZ C;  4A3E C;  5IP9 C;  1EFW A;  3S14 C;  2WAQ D;  3A8J A;  3GTK K;  4G7O A;  1BJT A;  2Y0S D;  4GTL A;  2E2H K;  1R9T A;  3RZD K;  4A3B C;  4QIW D;  4AH6 A;  1SMY A;  3GTJ K;  4XLN A;  4GTC A;  1YNN A;  2YU9 A;  3FOE A;  1TWA K;  1I3Q K;  1WIH A;  5IOT A;  4MEY A;  1TWF K;  3GEI A;  1I6H C;  3IPJ A;  2PHC B;  3S2H K;  4C3H K;  4WIL A;  1EK8 A;  3GTP C;  3G4C A;  1YCL A;  3FKI A;  4YFN A;  1WOP A;  2NVQ C;  5C4J K;  1F7V A;  3GTM K;  3S15 K;  2D6F C;  1F7U A;  1L0W A;  1VRQ C;  1KQ4 A;  1XZQ B;  5C3E K;  2JA6 K;  3AQP A;  3GTQ C;  5EGE A;  3GTL K;  1IBA A;  1TWC K;  3FHZ A;  1JQW A;  3ORE A;  4M1X A;  1AB4 A;  2E2H A;  2NVT C;  3PO2 C;  3VA7 A;  2JA6 A;  1WQG A;  4XSZ A;  4C3I K;  2JA5 A;  1O2B A;  1EI6 A;  3Q3Q A;  1O25 A;  3S1M C;  3LPX A;  1VGX A;  2E2H C;  5TMF A;  4A3D K;  3S1R C;  3DXJ A;  2PA8 L;  4KAR A;  2CFA B;  1Y1W C;  2R93 A;  3GEH A;  5TMC A;  4BY7 C;  2VUM A;  1ZVU A;  1K83 K;  4X6A K;  1WSR A;  1TWH C;  3GTQ K;  1J98 A;  5C3E C;  3GTK A;  3CQZ K;  1I3Q A;  3K7A K;  2VUM C;  4BXX C;  5M5W K;  4QJV B;  2PMZ D;  4P5A A;  3I4M C;  3BP3 A;  4OIP A;  2FQT A;  3S2H C;  2NVX C;  4KDD A;  3MML B;  5M5Y K;  1WOO A;  1TWA C;  4GTB A;  1I6V A;  5M3M K;  1SFO A;  1J6W A;  4A3C C;  1B4A A;  4A3F K;  1TWC A;  3AD7 C;  1ISE A;  3S1Q C;  1J6X A;  2ZUF A;  1DCO A;  4KM8 A;  1I50 C;  3TFI A;  2E2I K;  2WB1 D;  1IW7 A;  1X31 C;  1WCM K;  4OIO A;  5M5X K;  1SFO K;  3A8I A;  3N0C A;  4P9S A;  1F93 A;  3SZZ A;  3H0G A;  3FKI C;  4KAW X;  5TJ3 A;  4A3G C;  1TWG A;  3GTP A;  1YX2 A;  4OIR A;  1WOR A;  4WJ3 M;  2GAH C;  4A3J K;  4A3J C;  3HXA A;  3RZO C;  1R9T K;  2E2J K;  1PJ6 A;  2JA5 K;  1V5V A;  4GTF A;  2NVY A;  2V6T A;  2YU9 K;  4A3M K;  5JVO A;  3M3Y C;  1TWF A;  5FJ8 K;  4BBS K;  3HOZ C;  3N3Y A;  1BS2 A;  5EGH A;  4G0V A;  4C2M C;  2FQO A;  2R93 K;  1DCP A;  4A3L C;  1O27 A;  2R93 C;  4LK0 A;  3L4J A;  3H3V D;  3GTO C;  3M3Y K;  3S1N K;  4DDQ A;  1IL2 A;  3JST A;  3GDZ A;  5IP7 K;  1USO A;  3LAP A;  2XCR B;  1JOE A;  4A3K K;  2R7Z C;  2PMZ L;  1Y1V K;  5C4X C;  5M3F K;  3LAJ A;  2V6U A;  2JA7 K;  4KB4 A;  4QJV A;  4GTA A;  2GSO A;  4GFQ A;  3HOY C;  2Y0S L;  1WQH A;  3I4N C;  3GEE A;  2R92 K;  4OIQ A;  3M4O K;  5IP7 C;  2B63 K;  2B63 A;  1XXC A;  2BE5 A;  5IOS A;  4ILD A;  3AD8 C;  2PPB A;  3T00 A;  4G7H A;  4G0U A;  3TFJ A;  5IOQ A;  4KMA A;  4PAB A;  4Y52 C;  1K83 A;  1Y1V A;  3S1R K;  2V6S A;  5E68 A;  3HOZ K;  4BBS C;  5IYD C;  1O26 A;  4BY1 K;  3AH5 A;  1G51 A;  2JA5 C;  1DD5 A;  1B4B A;  1RU0 A;  3GIR A;  1HI9 A;  2R92 A;  4LOW A;  3S16 K;  3GTG A;  4C3J K;  3GSI A;  3N0B A;  5C44 C;  2CW0 A;  4G7Z A;  1PJ5 A;  4Y7N K;  3HOU K;  4KAS A;  3GTG C;  2XCQ A;  4O2D A;  3S17 K;  2WAQ L;  3CAG A;  3CQZ A;  1TWA A;  4GTD A;  4XCH A;  3S1N C;  4BY1 C;  2JA7 A;  2A68 A;  5C4J C;  5IYC K;  2ZUE A;  1C0A A;  1SFO C;  3T02 A;  2RGR A;  5CHP A;  4AYB D;  4C3H C;  4Q4Z A;  4Y52 K;  4C2M K;  1XXA A;  4A3D C;  4GTE A;  1I3Q C;  5IYC C;  3BUE A;  4A3F C;  4MQ9 A;  3H0G K;  3PO3 K;  3G4A A;  3S17 C;  1TWH A;  2B63 C;  1IS1 A;  2XCO A;  4LK1 A;  3PO2 K;  2NVT K;  3GTL A;  4NOI A;  2NVX K;  3RZO K;  4XLP A;  3HOY K;  5D4D A;  5C44 K;  2E2I A;  2KWA A;  4C45 A;  2JA7 C;  3I4M K;  2VUM K;  2JA6 C;  4YFX A;  4A3E K;  3TTG A;  3S16 C;  3FKI K;  1O28 A;  3H0G C;  1HQM A;  2GAG C;  4Q5S A;  4FM9 A;  4BY7 K;  1WCM A;  1GE9 A;  3HOX K;  2WB1 L;  3HOX C;  3T01 A;  3S1M K;  4QIW L;  4GZY A;  2PA8 D;  1O24 A;  3GTG K;  3M4O C;  2R92 C;  4LR2 A;  3FOF A;  1VJE A;  4BLA A;  4BBR C;  2EBB A;  4C3J C;  4BXX K;  5C4X K;  4A93 K;  3K7A C;  1Y1V C;  4YG2 A;  4A3I K;  5HL8 A;  2A69 A;  2JA8 K;  3OEP A;  3PO3 C;  5L46 A;  1XPP A;  1VLO A;  3GTP K;  4XSX A;  1EQR A;  1DCH A;  4AYB L;  4FZB A;  1WCM C;  5CJ9 A;  1I50 K;  4G0W A;  2A6E A;  1TWG K;  1ZQ1 C;  3GTO A;  2O5I A;  4A3M C;  2R7Z A;  4Y7N C;  3HOU C;  1ZYR A;  2P5M A;  1USM A;  3I4N K;  3HKZ L;  4KN7 A;  1J6V A;  4KAT A;  3GTL C;  2Y3P A;  2GSN A;  3HOW K;  1EH1 A;  1WOS A;  2W7V A;  4KC6 A;  1BGW A;  2JH3 A;  3S15 C;  4KMD A;  1O29 A;  3GTM C;  2NVQ K;  2NVY C;  1WQF A;  5IYD K;  3GTO K;  3HOW C;  4LQY A;  1TWH K;  4JK1 A;  4GT9 A;  4LLG A;  4LJZ A;  3A8K A;  2RH6 A;  4A3L K;  1I6H K;  5IOR A;  1WSV A;  4WJ4 A;  2CFA A;  4KM9 A;  1PJ7 A;  3BP8 C;  3S1Q K;  3GTJ C;  4J3N A;  1ZBS A;  1TWG C;  4KN4 A;  3RZD C;  4A3B K;  3SZY A;  4KMH A;  4C3I C;  3L4K A;  4KB2 A;  5IYB C;  2E2J C;  3S14 K;  1XZP B;  1XXB A;  5FLM K;  1O2A A;  5IP9 K;  4RMF A;  3S2D C;  1TWC C; 
#chains in the Genus database with same CATH homology
 3A8I A;  4PAB A;  3A8K A;  1WOP A;  3A8J A;  4P9S A;  1WSV A;  5L46 A;  1PJ7 A;  1VLO A;  1VRQ C;  3ADA C;  1XZQ B;  1YX2 A;  3GEH A;  3GIR A;  1WOO A;  4PAA A;  3GEE A;  1WOS A;  3TTG A;  1WOR A;  1WSR A;  2GAH C;  3AD7 C;  3TFJ A;  3GEI A;  3TFH A;  3GSI A;  1XZP B;  3TFI A;  3AD9 C;  2GAG C;  3AD8 C;  1XZQ A;  1XZP A;  1PJ6 A;  1X31 C;  1V5V A;  1PJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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