1XZQB

Structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
117
Chain Sequence
MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
total genus 26
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzqB00
5L46A 1XZQA 1XZPA 1WORA 1WSVA 3GIRA 3GEEA 3TTGA 3ADAC 4P9SA 1WOSA 1WOOA 1VRQC 1XZQB 1XZPB 1PJ5A 3AD9C 1VLOA 3AD8C 4PAAA 1YX2A 3A8IA 3AD7C 3GEIA 3GEHA 4PABA 1PJ6A 3A8KA 3TFJA 3TFHA 1WOPA 1PJ7A 1X31C 3A8JA 1V5VA 2GAHC 3GSIA 2GAGC 3TFIA 1WSRA
chains in the Genus database with same CATH superfamily
4BLAA 2P5MA 5M5YK 3FOFA 3S1NK 4BBSK 2O5IA 3S14C 2R7ZC 2R7ZA 5TMCA 1O27A 3OREA 1I6HC 4A3KK 3AD8C 4PAAA 1R9TA 1YX2A 3GTOK 1J98A 5IYCC 2JA7C 1TWGC 4KN7A 1PJ6A 2JA7A 3T00A 1HI9A 3G4AA 3MMLB 4XLNA 3GTKK 3GTMK 5IP9C 1C0AA 3Q3QA 4A3LK 3OPFA 2E2HA 3M3YC 3GTJK 4QJVA 2WAQD 3T01A 5IYDK 2XCRB 3HOWK 2EBBA 2O5JA 4QIWL 4MQ9A 4GTEA 4OIRA 4YFNA 2R92K 5IP7C 1XXAA 3TFJA 2VUMK 2A68A 5IYBC 3AH5A 2PA8L 1WCMC 1WCMA 1TWCK 1IQ0A 1RU0A 4GFQA 2GAGC 1WIHA 2JA5C 2JA5A 5IOSA 1DCPA 5D4DA 2ZUEA 1I3QK 1SMYA 5M5XK 1XZPA 1G51A 1HQMA 1O2AA 4A3DK 1WORA 4A3GC 3M4OK 3H0GK 3GIRA 3HOZK 1GE9A 1TWAK 3TTGA 4A3IC 3S1RC 4KMHA 4XLPA 2JA8C 2PMZD 5EGEA 1J6WA 4LR2A 5C3EC 2YU9K 3GTMC 4OIPA 4KC6A 4KATA 1X31C 3S16C 5C44K 4FZBA 4LOWA 3NUHA 3S15C 3HOUK 1Y1VC 1Y1VA 3S1MC 4KB2A 1J6VA 3GTGK 1USOA 1ZBSA 5EGHA 3LAPA 4A3FK 4C45A 1AB4A 4OINA 1EI6A 3S2HC 3LPXA 4Y7NK 3A8KA 1IE0A 1Y1WK 4MEYA 3GSIA 1TWAC 1EH1A 4KDDA 3L4KA 3RZDC 1F93A 2Y0SL 5M3MK 3RZOK 3BUEA 2FQTA 3I4MC 2V6UA 4C3IK 1SFOK 3K7AK 2NVXK 1WQGA 3L4JA 1PJ5A 3EQLA 3SZZA 5C4JK 4A3JC 2NVQC 3HOXC 3FKIA 2BE5A 5IORA 2A6EA 4WJ4A 1YNJA 2GSOA 5TMFA 1R9TK 1K83C 1B4BA 4AYBL 1WOPA 1L0WA 2CFAA 3GDZA 4G0WA 4KMDA 4AH6A 3CQZA 4ILDA 4A93C 2PPBA 1DD5A 1XXCA 2E2HK 4WILA 4BXXC 4RMFA 1IL2A 1TWFC 2KWAA 2Y3PA 2W7VA 2R93C 2R93A 1UV7A 1TWGA 2WAQL 3GTPC 1EK8A 3GTPA 2NVTK 4BBRC 4A3EK 1BDFA 4BY7C 3HKZD 5FLMK 3VA7A 3V4GA 5L46A 4A3CC 5HL8A 4Y52C 5JVOA 3GEEA 1I50C 1I50A 4YG2A 1EFWA 3GTLK 1VLOA 1IW7A 4QJVB 2NVYK 4G0UA 4C3HK 3S17K 5C4XK 4X6AK 4JK1A 1O29A 4XSXA 3GTQC 4YFXA 3GTQA 4GZYA 5CHPA 3PO3K 2WB1L 2GSNA 4Q4ZA 3S1NC 4BBSC 1ZVUA 1KQ4A 4LQYA 2B63K 4GTFA 1XZQA 5IOQA 4A3KC 2V6TA 3GTOC 1WOOA 3GTOA 1XZPB 2JA6K 1JQWA 2ZUFA 1F7VA 5IOTA 3CAGA 3GTKC 3GTKA 1VGXA 3GTMA 1DCHA 1TWHK 4XCHA 1YNNA 3A8JA 4A3LC 4LK0A 3GTJC 3GTJA 5IYDC 3HOWC 4BY1K 1ZXOA 2E2JK 1WQFA 3N3YA 3HOYK 3H3VL 4KB4A 2R92C 3PO2K 3BP3A 3S0XA 2VUMC 2VUMA 3GEHA 3FKIK 3HOVK 1TWCC 1TWCA 5M5WK 3I4NK 4A3BK 3S1QK 1XXBA 1I3QC 2A6HA 1I3QA 4OIOA 4C2MK 4A3DC 3M4OC 3H0GC 2E2IK 3H0GA 3HOZC 1TWAA 4G7OA 1EQRA 4GTBA 3G4CA 3CQZK 1YCLA 1O25A 1O28A 1XPPA 3S14K 2R7ZK 3JSTA 4C3JK 2YU9C 2YU9A 4BKWA 1F7UA 1JOEA 1BJTA 1I6HK 3AD7C 4PABA 2V6SA 2RGRA 4YFKA 5C44C 1K83A 5IYCK 1ISEA 4KASA 2JA7K 1TWGK 3HOUC 5E68A 1O26A 1WSRA 1DCOA 2CFAB 1O2BA 3GTGC 1WSVA 1BGWA 5IP9K 3FHZA 4A3FC 1J6XA 1WOSA 3M3YK 1WQHA 4KAWX 1TWFA 4Y7NC 3HKZL 1Y1WC 1Y1WA 1VJEA 3N0CA 5CJ9A 2RH6A 1F9NA 2GSUA 2XCOA 4G0VA 4GTDA 3AQOA 1V5VA 3RZOC 5IP7K 3TFIA 4C3IC 5IYBK 4FM9A 1SFOC 1SFOA 1WCMK 3K7AC 2NVXC 4XSZA 4ZH4A 2NVXA 4BLBA 4C3JC 5C4JC 2JA5K 4KM8A 4AYBD 1B4AA 3ERED 4P9SA 2XCQA 1INNA 4A3GK 1R9TC 1USMA 4A3IK 3S1RK 4G7ZA 5FJ8K 3GEIA 2JA8K 3BP8C 3S2DK 3DXJA 1VH2A 2P8TA 5C3EK 1BS2A 4P5AA 2PMZL 1ZYRA 1IS1A 4MEXA 2E2HC 3S16K 4O2DA 4Q5SA 2PHCB 3S15K 1Y1VK 2A69A 2FQOA 3S1MK 1XZQB 3AD9C 4KM9A 3HXAA 3A8IA 2NVTC 4M1XA 4P5BA 4A3EC 5FLMC 1JVIA 3S2HK 4KMAA 3SZYA 2ZFZA 1I6VA 4QIWD 4OIQA 5JFEA 4A3MK 2JH3A 3GTLC 3GTLA 3RZDK 3IPJA 2WB1D 2NVYC 2NVYA 2PA8D 4C3HC 3S17C 3I4MK 4KMUA 5C4XC 4X6AC 3S2DC 3QX3A 2R92A 3PO3C 4NOIA 1IBAA 4A3JK 2NVQK 5TJ3A 3HOXK 1PJ7A 4KARA 2B63C 2B63A 1K83K 1O2FB 2JA6C 2JA6A 4GTAA 3AQPA 2D6FC 4GT9A 1VRQC 4A93K 4BXXK 4J3NA 1TWFK 1TWHC 1TWHA 1O24A 4WJ3M 3N0BA 3LAJA 3T02A 2R93K 4A3MC 3H3VD 4BY1C 3GTPK 4DDQA 2E2JC 1ZQ1C 4LLGA 4BBRK 3OEPA 3HOYC 3GTGA 4KN4A 4BY7K 3PO2C 3ADAC 2CW0A 3WODA 4A3CK 3FOEA 4Y52K 3FKIC 1I50K 3HOVC 3I4NC 2Y0SD 4A3BC 4LK1A 3S1QC 4LJZA 4C2MC 4G7HA 3TFHA 2E2IC 2E2IA 2GAHC 3GTQK 4GTLA 4GTCA 3CQZC 5M3FK
chains in the Genus database with same CATH topology
5L46A 1XZQA 1XZPA 1WORA 1WSVA 3GIRA 3GEEA 3TTGA 3ADAC 4P9SA 1WOSA 1WOOA 1VRQC 1XZQB 1XZPB 1PJ5A 3AD9C 1VLOA 3AD8C 4PAAA 1YX2A 3A8IA 3AD7C 3GEIA 3GEHA 4PABA 1PJ6A 3A8KA 3TFJA 3TFHA 1WOPA 1PJ7A 1X31C 3A8JA 1V5VA 2GAHC 3GSIA 2GAGC 3TFIA 1WSRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L46 A;  1XZQ A;  1XZP A;  1WOR A;  1WSV A;  3GIR A;  3GEE A;  3TTG A;  3ADA C;  4P9S A;  1WOS A;  1WOO A;  1VRQ C;  1XZQ B;  1XZP B;  1PJ5 A;  3AD9 C;  1VLO A;  3AD8 C;  4PAA A;  1YX2 A;  3A8I A;  3AD7 C;  3GEI A;  3GEH A;  4PAB A;  1PJ6 A;  3A8K A;  3TFJ A;  3TFH A;  1WOP A;  1PJ7 A;  1X31 C;  3A8J A;  1V5V A;  2GAH C;  3GSI A;  2GAG C;  3TFI A;  1WSR A; 
#chains in the Genus database with same CATH topology
 4BLA A;  2P5M A;  5M5Y K;  3FOF A;  3S1N K;  4BBS K;  2O5I A;  3S14 C;  2R7Z C;  2R7Z A;  5TMC A;  1O27 A;  3ORE A;  1I6H C;  4A3K K;  3AD8 C;  4PAA A;  1R9T A;  1YX2 A;  3GTO K;  1J98 A;  5IYC C;  2JA7 C;  1TWG C;  4KN7 A;  1PJ6 A;  2JA7 A;  3T00 A;  1HI9 A;  3G4A A;  3MML B;  4XLN A;  3GTK K;  3GTM K;  5IP9 C;  1C0A A;  3Q3Q A;  4A3L K;  3OPF A;  2E2H A;  3M3Y C;  3GTJ K;  4QJV A;  2WAQ D;  3T01 A;  5IYD K;  2XCR B;  3HOW K;  2EBB A;  2O5J A;  4QIW L;  4MQ9 A;  4GTE A;  4OIR A;  4YFN A;  2R92 K;  5IP7 C;  1XXA A;  3TFJ A;  2VUM K;  2A68 A;  5IYB C;  3AH5 A;  2PA8 L;  1WCM C;  1WCM A;  1TWC K;  1IQ0 A;  1RU0 A;  4GFQ A;  2GAG C;  1WIH A;  2JA5 C;  2JA5 A;  5IOS A;  1DCP A;  5D4D A;  2ZUE A;  1I3Q K;  1SMY A;  5M5X K;  1XZP A;  1G51 A;  1HQM A;  1O2A A;  4A3D K;  1WOR A;  4A3G C;  3M4O K;  3H0G K;  3GIR A;  3HOZ K;  1GE9 A;  1TWA K;  3TTG A;  4A3I C;  3S1R C;  4KMH A;  4XLP A;  2JA8 C;  2PMZ D;  5EGE A;  1J6W A;  4LR2 A;  5C3E C;  2YU9 K;  3GTM C;  4OIP A;  4KC6 A;  4KAT A;  1X31 C;  3S16 C;  5C44 K;  4FZB A;  4LOW A;  3NUH A;  3S15 C;  3HOU K;  1Y1V C;  1Y1V A;  3S1M C;  4KB2 A;  1J6V A;  3GTG K;  1USO A;  1ZBS A;  5EGH A;  3LAP A;  4A3F K;  4C45 A;  1AB4 A;  4OIN A;  1EI6 A;  3S2H C;  3LPX A;  4Y7N K;  3A8K A;  1IE0 A;  1Y1W K;  4MEY A;  3GSI A;  1TWA C;  1EH1 A;  4KDD A;  3L4K A;  3RZD C;  1F93 A;  2Y0S L;  5M3M K;  3RZO K;  3BUE A;  2FQT A;  3I4M C;  2V6U A;  4C3I K;  1SFO K;  3K7A K;  2NVX K;  1WQG A;  3L4J A;  1PJ5 A;  3EQL A;  3SZZ A;  5C4J K;  4A3J C;  2NVQ C;  3HOX C;  3FKI A;  2BE5 A;  5IOR A;  2A6E A;  4WJ4 A;  1YNJ A;  2GSO A;  5TMF A;  1R9T K;  1K83 C;  1B4B A;  4AYB L;  1WOP A;  1L0W A;  2CFA A;  3GDZ A;  4G0W A;  4KMD A;  4AH6 A;  3CQZ A;  4ILD A;  4A93 C;  2PPB A;  1DD5 A;  1XXC A;  2E2H K;  4WIL A;  4BXX C;  4RMF A;  1IL2 A;  1TWF C;  2KWA A;  2Y3P A;  2W7V A;  2R93 C;  2R93 A;  1UV7 A;  1TWG A;  2WAQ L;  3GTP C;  1EK8 A;  3GTP A;  2NVT K;  4BBR C;  4A3E K;  1BDF A;  4BY7 C;  3HKZ D;  5FLM K;  3VA7 A;  3V4G A;  5L46 A;  4A3C C;  5HL8 A;  4Y52 C;  5JVO A;  3GEE A;  1I50 C;  1I50 A;  4YG2 A;  1EFW A;  3GTL K;  1VLO A;  1IW7 A;  4QJV B;  2NVY K;  4G0U A;  4C3H K;  3S17 K;  5C4X K;  4X6A K;  4JK1 A;  1O29 A;  4XSX A;  3GTQ C;  4YFX A;  3GTQ A;  4GZY A;  5CHP A;  3PO3 K;  2WB1 L;  2GSN A;  4Q4Z A;  3S1N C;  4BBS C;  1ZVU A;  1KQ4 A;  4LQY A;  2B63 K;  4GTF A;  1XZQ A;  5IOQ A;  4A3K C;  2V6T A;  3GTO C;  1WOO A;  3GTO A;  1XZP B;  2JA6 K;  1JQW A;  2ZUF A;  1F7V A;  5IOT A;  3CAG A;  3GTK C;  3GTK A;  1VGX A;  3GTM A;  1DCH A;  1TWH K;  4XCH A;  1YNN A;  3A8J A;  4A3L C;  4LK0 A;  3GTJ C;  3GTJ A;  5IYD C;  3HOW C;  4BY1 K;  1ZXO A;  2E2J K;  1WQF A;  3N3Y A;  3HOY K;  3H3V L;  4KB4 A;  2R92 C;  3PO2 K;  3BP3 A;  3S0X A;  2VUM C;  2VUM A;  3GEH A;  3FKI K;  3HOV K;  1TWC C;  1TWC A;  5M5W K;  3I4N K;  4A3B K;  3S1Q K;  1XXB A;  1I3Q C;  2A6H A;  1I3Q A;  4OIO A;  4C2M K;  4A3D C;  3M4O C;  3H0G C;  2E2I K;  3H0G A;  3HOZ C;  1TWA A;  4G7O A;  1EQR A;  4GTB A;  3G4C A;  3CQZ K;  1YCL A;  1O25 A;  1O28 A;  1XPP A;  3S14 K;  2R7Z K;  3JST A;  4C3J K;  2YU9 C;  2YU9 A;  4BKW A;  1F7U A;  1JOE A;  1BJT A;  1I6H K;  3AD7 C;  4PAB A;  2V6S A;  2RGR A;  4YFK A;  5C44 C;  1K83 A;  5IYC K;  1ISE A;  4KAS A;  2JA7 K;  1TWG K;  3HOU C;  5E68 A;  1O26 A;  1WSR A;  1DCO A;  2CFA B;  1O2B A;  3GTG C;  1WSV A;  1BGW A;  5IP9 K;  3FHZ A;  4A3F C;  1J6X A;  1WOS A;  3M3Y K;  1WQH A;  4KAW X;  1TWF A;  4Y7N C;  3HKZ L;  1Y1W C;  1Y1W A;  1VJE A;  3N0C A;  5CJ9 A;  2RH6 A;  1F9N A;  2GSU A;  2XCO A;  4G0V A;  4GTD A;  3AQO A;  1V5V A;  3RZO C;  5IP7 K;  3TFI A;  4C3I C;  5IYB K;  4FM9 A;  1SFO C;  1SFO A;  1WCM K;  3K7A C;  2NVX C;  4XSZ A;  4ZH4 A;  2NVX A;  4BLB A;  4C3J C;  5C4J C;  2JA5 K;  4KM8 A;  4AYB D;  1B4A A;  3ERE D;  4P9S A;  2XCQ A;  1INN A;  4A3G K;  1R9T C;  1USM A;  4A3I K;  3S1R K;  4G7Z A;  5FJ8 K;  3GEI A;  2JA8 K;  3BP8 C;  3S2D K;  3DXJ A;  1VH2 A;  2P8T A;  5C3E K;  1BS2 A;  4P5A A;  2PMZ L;  1ZYR A;  1IS1 A;  4MEX A;  2E2H C;  3S16 K;  4O2D A;  4Q5S A;  2PHC B;  3S15 K;  1Y1V K;  2A69 A;  2FQO A;  3S1M K;  1XZQ B;  3AD9 C;  4KM9 A;  3HXA A;  3A8I A;  2NVT C;  4M1X A;  4P5B A;  4A3E C;  5FLM C;  1JVI A;  3S2H K;  4KMA A;  3SZY A;  2ZFZ A;  1I6V A;  4QIW D;  4OIQ A;  5JFE A;  4A3M K;  2JH3 A;  3GTL C;  3GTL A;  3RZD K;  3IPJ A;  2WB1 D;  2NVY C;  2NVY A;  2PA8 D;  4C3H C;  3S17 C;  3I4M K;  4KMU A;  5C4X C;  4X6A C;  3S2D C;  3QX3 A;  2R92 A;  3PO3 C;  4NOI A;  1IBA A;  4A3J K;  2NVQ K;  5TJ3 A;  3HOX K;  1PJ7 A;  4KAR A;  2B63 C;  2B63 A;  1K83 K;  1O2F B;  2JA6 C;  2JA6 A;  4GTA A;  3AQP A;  2D6F C;  4GT9 A;  1VRQ C;  4A93 K;  4BXX K;  4J3N A;  1TWF K;  1TWH C;  1TWH A;  1O24 A;  4WJ3 M;  3N0B A;  3LAJ A;  3T02 A;  2R93 K;  4A3M C;  3H3V D;  4BY1 C;  3GTP K;  4DDQ A;  2E2J C;  1ZQ1 C;  4LLG A;  4BBR K;  3OEP A;  3HOY C;  3GTG A;  4KN4 A;  4BY7 K;  3PO2 C;  3ADA C;  2CW0 A;  3WOD A;  4A3C K;  3FOE A;  4Y52 K;  3FKI C;  1I50 K;  3HOV C;  3I4N C;  2Y0S D;  4A3B C;  4LK1 A;  3S1Q C;  4LJZ A;  4C2M C;  4G7H A;  3TFH A;  2E2I C;  2E2I A;  2GAH C;  3GTQ K;  4GTL A;  4GTC A;  3CQZ C;  5M3F K; 
#chains in the Genus database with same CATH homology
 5L46 A;  1XZQ A;  1XZP A;  1WOR A;  1WSV A;  3GIR A;  3GEE A;  3TTG A;  3ADA C;  4P9S A;  1WOS A;  1WOO A;  1VRQ C;  1XZQ B;  1XZP B;  1PJ5 A;  3AD9 C;  1VLO A;  3AD8 C;  4PAA A;  1YX2 A;  3A8I A;  3AD7 C;  3GEI A;  3GEH A;  4PAB A;  1PJ6 A;  3A8K A;  3TFJ A;  3TFH A;  1WOP A;  1PJ7 A;  1X31 C;  3A8J A;  1V5V A;  2GAH C;  3GSI A;  2GAG C;  3TFI A;  1WSR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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