1USMA

Dcoh, a bifunctional protein-binding transcriptional coactivator, pro9leu mutant
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
80
structure length
77
Chain Sequence
b'MDWEERKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALLQR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
publication title Crystal Structure of Transcriptional Coactivator DCoH from Thermus Thermophilus
rcsb
source organism Thermus thermophilus
molecule tags Transcriptional stimulator
total genus 23
structure length 77
sequence length 80
ec nomenclature
pdb deposition date 2003-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1usmA00
1DCHA 1RU0A 3HXAA 4LOWA 2EBBA 4WILA 4C45A 1DCPA 1USMA 1USOA 2V6SA 3JSTA 2V6UA 2V6TA 1F93A 1DCOA
chains in the Genus database with same CATH superfamily
3T01A 3TTGA 2CFAA 1F7UA 2Y3PA 4QJVA 1O26A 4WJ3M 3GTMC 5IOSA 2R93C 3L4JA 2R93K 4C3IC 3GTQA 5M5WK 3SZYA 1USMA 1JOEA 3GTGK 2R7ZA 2PA8D 3OEPA 3N0BA 1R9TA 3S1NC 1BDFA 3S1NK 4KMAA 1YNNA 3HOXC 1X31C 4G0UA 2VUMC 1DCOA 1ZVUA 3GTJC 1BS2A 4PABA 3GTJK 3K7AC 3AD8C 3HOZC 4Q5SA 4GTCA 1EFWA 4BBRK 3HOZK 4G7OA 1EI6A 4RMFA 4XSXA 3SZZA 4DDQA 3HOUK 1YX2A 3ADAC 1WQFA 3N3YA 2GSNA 5C3EC 4ILDA 4C45A 3S1QK 1SFOA 4OIRA 5EGHA 4QIWL 1EK8A 4BXXK 4A3IC 3HOVC 4KMDA 1WCMC 5D4DA 4XCHA 3FKIC 1J98A 1WCMK 2RH6A 1I6VA 1WQHA 2WB1L 4M1XA 5TMCA 2JH3A 3S0XA 5M3FK 2PHCB 4WILA 3GTKA 2Y0SD 1USOA 2B63A 3BP8C 3GEIA 3A8KA 2BE5A 3RZDC 2D6FC 1O27A 4YFXA 3VA7A 1WOOA 1J6XA 1K83C 2A68A 1XPPA 5EGEA 1TWCC 1I3QC 3HOWC 4KATA 1TWCK 1I3QK 3T00A 2E2JC 1SFOK 3HOWK 4BBSK 3BUEA 5FLMK 1PJ5A 3TFJA 2PMZD 1WIHA 2E2IC 4A3MC 1TWGC 1F9NA 2JA8C 4A3MK 2JA8K 5IYBK 4Y52C 1VJEA 3GTMA 4KN7A 4XLNA 4Y52K 2R93A 1O2FB 3H3VL 3RZOC 1O2BA 4KDDA 3RZOK 3S2DC 1ZQ1C 3S2DK 3S1RK 3M3YK 1XXBA 1PJ6A 3EQLA 1KQ4A 1VGXA 4G0VA 2A6EA 2VUMA 3GTJA 1WOSA 4KMHA 3S1MC 1J6VA 3S1MK 1O29A 1I50C 1TWFC 1I50K 1TWFK 4YFNA 5IP7C 2KWAA 3GTMK 5IP7K 1WQGA 5E68A 2FQTA 1RU0A 3G4CA 5TJ3A 4C3IK 3I4NC 3CQZC 1O28A 3CQZK 4BLAA 4GTBA 5C4JC 1Y1VC 4C2MC 5C4JK 1WSRA 1WCMA 3A8JA 3FKIA 1Y1VK 4KB2A 4KARA 1TWHC 3BP3A 1IW7A 1TWHK 2WAQL 1O25A 3HOXK 3S16C 2VUMK 3S16K 1XZPB 3K7AK 4KN4A 1B4BA 4P5AA 2XCRB 1JQWA 5IYCC 3GSIA 3S14C 2JA5C 3DXJA 5IYCK 4Q4ZA 2JA5K 4A93C 1DCHA 4A93K 1K83A 4G7ZA 3HKZL 4A3GC 1C0AA 2ZFZA 5C3EK 1TWCA 1I3QA 4A3GK 4GFQA 5IOQA 2V6SA 2V6TA 4A3IK 3HOVK 4YFKA 3M4OC 3FKIK 2O5IA 1ZBSA 2V6UA 3M4OK 4AYBL 2PPBA 2YU9C 4A3EC 2E2IA 1TWGA 3HXAA 2YU9K 2A69A 2NVXC 4A3EK 4GTLA 4C3JC 5C4XC 1I6HC 3GDZA 4C3HC 4ZH4A 2NVYC 4MEYA 4A3JC 3RZDK 4MEXA 1I6HK 3GIRA 4C3HK 2NVYK 4A3JK 2CW0A 4A3CC 4GTDA 3CAGA 1K83K 1J6WA 4A3CK 4KAWX 2E2JK 2JA6C 3GTPC 3HOYC 5CJ9A 2RGRA 3LAPA 3GTPK 3L4KA 3H0GA 1YNJA 4OIOA 3GTLC 3GTLK 2E2IK 1TWGK 1O2AA 4AH6A 1I50A 1TWFA 2GAHC 4KB4A 4KM9A 1VLOA 1L0WA 3T02A 1XZQB 4X6AC 3QX3A 1IE0A 4XLPA 4X6AK 3CQZA 4NOIA 2O5JA 5HL8A 2WAQD 3Q3QA 2JA7C 1DD5A 1EQRA 1VRQC 2JA7K 1Y1VA 4WJ4A 5IYDC 4GZYA 5IYDK 2GSUA 1TWHA 3JSTA 5FJ8K 3H0GC 3TFIA 3H0GK 3S2HC 1JVIA 2XCOA 3S2HK 1HQMA 3OREA 4A3FC 2Y0SL 4A3FK 4QIWD 2JA5A 3GEHA 4GT9A 3AQPA 4LJZA 1ZYRA 2XCQA 2WB1D 1BJTA 4BY1C 4MQ9A 3I4NK 1DCPA 2CFAB 3MMLB 1IL2A 1SMYA 1IS1A 4QJVB 4P9SA 3FOFA 4C2MK 1UV7A 3LPXA 2YU9A 3AQOA 2PMZL 4LOWA 1G51A 2NVXA 4BY7C 3S17C 4BY7K 3GTGC 1PJ7A 1YCLA 1Y1WC 3S17K 1XXCA 4FZBA 1XZPA 4GTAA 1Y1WK 2NVYA 2E2HC 3A8IA 2E2HK 3S14K 2P8TA 3AH5A 2NVTC 3N0CA 1BGWA 4FM9A 4GTEA 1INNA 5M5XK 2NVTK 3GTOC 1GE9A 5L46A 3GTOK 2EBBA 1TWAC 4KMUA 3G4AA 1TWAK 2R92C 5IORA 3V4GA 3OPFA 2JA6A 4KC6A 3GTPA 2R92K 4BBRC 3PO3C 4OIPA 1B4AA 4P5BA 3S15C 3PO3K 2GAGC 5IP9C 3GTLA 2NVQC 3HOUC 3H3VD 3S15K 5IP9K 3IPJA 2NVQK 3I4MC 5M5YK 3I4MK 4A3KC 2NVXK 3S1QC 4A3KK 4PAAA 3GTQC 3AD9C 3WODA 1F7VA 3GTQK 4C3JK 4BXXC 2R7ZC 5C4XK 5JVOA 2R7ZK 1EH1A 1R9TC 4O2DA 1R9TK 2W7VA 2JA7A 3AD7C 4OINA 4LLGA 4J3NA 2PA8L 4A3BC 1VH2A 2ZUFA 4A3BK 5CHPA 2JA6K 5IOTA 3HOYK 2ZUEA 4A3LC 4LQYA 4A3LK 3ERED 4LR2A 5M3MK 1XXAA 5TMFA 4BKWA 1SFOC 4BBSC 1HI9A 1XZQA 5FLMC 4LK1A 4BLBA 3PO2C 4LK0A 1IQ0A 3PO2K 2P5MA 4XSZA 3LAJA 5IYBC 3GTKC 2B63C 3GTKK 2B63K 2A6HA 1AB4A 4OIQA 1O24A 1V5VA 1WSVA 1ZXOA 5C44C 3HKZD 5C44K 3FOEA 5JFEA 3GTGA 2GSOA 4KASA 3S1RC 1Y1WA 4Y7NC 3FHZA 3M3YC 3NUHA 2E2HA 4KM8A 3GEEA 4Y7NK 4G0WA 1IBAA 2FQOA 1WORA 1ISEA 4GTFA 4YG2A 3GTOA 4A3DC 3TFHA 4A3DK 1WOPA 4AYBD 1TWAA 4BY1K 4G7HA 2R92A 1F93A 4JK1A
chains in the Genus database with same CATH topology
1DCHA 1RU0A 3HXAA 4LOWA 2EBBA 4WILA 4C45A 1DCPA 1USMA 1USOA 2V6SA 3JSTA 2V6UA 2V6TA 1F93A 1DCOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DCH A;  1RU0 A;  3HXA A;  4LOW A;  2EBB A;  4WIL A;  4C45 A;  1DCP A;  1USM A;  1USO A;  2V6S A;  3JST A;  2V6U A;  2V6T A;  1F93 A;  1DCO A; 
#chains in the Genus database with same CATH topology
 3T01 A;  3TTG A;  2CFA A;  1F7U A;  2Y3P A;  4QJV A;  1O26 A;  4WJ3 M;  3GTM C;  5IOS A;  2R93 C;  3L4J A;  2R93 K;  4C3I C;  3GTQ A;  5M5W K;  3SZY A;  1USM A;  1JOE A;  3GTG K;  2R7Z A;  2PA8 D;  3OEP A;  3N0B A;  1R9T A;  3S1N C;  1BDF A;  3S1N K;  4KMA A;  1YNN A;  3HOX C;  1X31 C;  4G0U A;  2VUM C;  1DCO A;  1ZVU A;  3GTJ C;  1BS2 A;  4PAB A;  3GTJ K;  3K7A C;  3AD8 C;  3HOZ C;  4Q5S A;  4GTC A;  1EFW A;  4BBR K;  3HOZ K;  4G7O A;  1EI6 A;  4RMF A;  4XSX A;  3SZZ A;  4DDQ A;  3HOU K;  1YX2 A;  3ADA C;  1WQF A;  3N3Y A;  2GSN A;  5C3E C;  4ILD A;  4C45 A;  3S1Q K;  1SFO A;  4OIR A;  5EGH A;  4QIW L;  1EK8 A;  4BXX K;  4A3I C;  3HOV C;  4KMD A;  1WCM C;  5D4D A;  4XCH A;  3FKI C;  1J98 A;  1WCM K;  2RH6 A;  1I6V A;  1WQH A;  2WB1 L;  4M1X A;  5TMC A;  2JH3 A;  3S0X A;  5M3F K;  2PHC B;  4WIL A;  3GTK A;  2Y0S D;  1USO A;  2B63 A;  3BP8 C;  3GEI A;  3A8K A;  2BE5 A;  3RZD C;  2D6F C;  1O27 A;  4YFX A;  3VA7 A;  1WOO A;  1J6X A;  1K83 C;  2A68 A;  1XPP A;  5EGE A;  1TWC C;  1I3Q C;  3HOW C;  4KAT A;  1TWC K;  1I3Q K;  3T00 A;  2E2J C;  1SFO K;  3HOW K;  4BBS K;  3BUE A;  5FLM K;  1PJ5 A;  3TFJ A;  2PMZ D;  1WIH A;  2E2I C;  4A3M C;  1TWG C;  1F9N A;  2JA8 C;  4A3M K;  2JA8 K;  5IYB K;  4Y52 C;  1VJE A;  3GTM A;  4KN7 A;  4XLN A;  4Y52 K;  2R93 A;  1O2F B;  3H3V L;  3RZO C;  1O2B A;  4KDD A;  3RZO K;  3S2D C;  1ZQ1 C;  3S2D K;  3S1R K;  3M3Y K;  1XXB A;  1PJ6 A;  3EQL A;  1KQ4 A;  1VGX A;  4G0V A;  2A6E A;  2VUM A;  3GTJ A;  1WOS A;  4KMH A;  3S1M C;  1J6V A;  3S1M K;  1O29 A;  1I50 C;  1TWF C;  1I50 K;  1TWF K;  4YFN A;  5IP7 C;  2KWA A;  3GTM K;  5IP7 K;  1WQG A;  5E68 A;  2FQT A;  1RU0 A;  3G4C A;  5TJ3 A;  4C3I K;  3I4N C;  3CQZ C;  1O28 A;  3CQZ K;  4BLA A;  4GTB A;  5C4J C;  1Y1V C;  4C2M C;  5C4J K;  1WSR A;  1WCM A;  3A8J A;  3FKI A;  1Y1V K;  4KB2 A;  4KAR A;  1TWH C;  3BP3 A;  1IW7 A;  1TWH K;  2WAQ L;  1O25 A;  3HOX K;  3S16 C;  2VUM K;  3S16 K;  1XZP B;  3K7A K;  4KN4 A;  1B4B A;  4P5A A;  2XCR B;  1JQW A;  5IYC C;  3GSI A;  3S14 C;  2JA5 C;  3DXJ A;  5IYC K;  4Q4Z A;  2JA5 K;  4A93 C;  1DCH A;  4A93 K;  1K83 A;  4G7Z A;  3HKZ L;  4A3G C;  1C0A A;  2ZFZ A;  5C3E K;  1TWC A;  1I3Q A;  4A3G K;  4GFQ A;  5IOQ A;  2V6S A;  2V6T A;  4A3I K;  3HOV K;  4YFK A;  3M4O C;  3FKI K;  2O5I A;  1ZBS A;  2V6U A;  3M4O K;  4AYB L;  2PPB A;  2YU9 C;  4A3E C;  2E2I A;  1TWG A;  3HXA A;  2YU9 K;  2A69 A;  2NVX C;  4A3E K;  4GTL A;  4C3J C;  5C4X C;  1I6H C;  3GDZ A;  4C3H C;  4ZH4 A;  2NVY C;  4MEY A;  4A3J C;  3RZD K;  4MEX A;  1I6H K;  3GIR A;  4C3H K;  2NVY K;  4A3J K;  2CW0 A;  4A3C C;  4GTD A;  3CAG A;  1K83 K;  1J6W A;  4A3C K;  4KAW X;  2E2J K;  2JA6 C;  3GTP C;  3HOY C;  5CJ9 A;  2RGR A;  3LAP A;  3GTP K;  3L4K A;  3H0G A;  1YNJ A;  4OIO A;  3GTL C;  3GTL K;  2E2I K;  1TWG K;  1O2A A;  4AH6 A;  1I50 A;  1TWF A;  2GAH C;  4KB4 A;  4KM9 A;  1VLO A;  1L0W A;  3T02 A;  1XZQ B;  4X6A C;  3QX3 A;  1IE0 A;  4XLP A;  4X6A K;  3CQZ A;  4NOI A;  2O5J A;  5HL8 A;  2WAQ D;  3Q3Q A;  2JA7 C;  1DD5 A;  1EQR A;  1VRQ C;  2JA7 K;  1Y1V A;  4WJ4 A;  5IYD C;  4GZY A;  5IYD K;  2GSU A;  1TWH A;  3JST A;  5FJ8 K;  3H0G C;  3TFI A;  3H0G K;  3S2H C;  1JVI A;  2XCO A;  3S2H K;  1HQM A;  3ORE A;  4A3F C;  2Y0S L;  4A3F K;  4QIW D;  2JA5 A;  3GEH A;  4GT9 A;  3AQP A;  4LJZ A;  1ZYR A;  2XCQ A;  2WB1 D;  1BJT A;  4BY1 C;  4MQ9 A;  3I4N K;  1DCP A;  2CFA B;  3MML B;  1IL2 A;  1SMY A;  1IS1 A;  4QJV B;  4P9S A;  3FOF A;  4C2M K;  1UV7 A;  3LPX A;  2YU9 A;  3AQO A;  2PMZ L;  4LOW A;  1G51 A;  2NVX A;  4BY7 C;  3S17 C;  4BY7 K;  3GTG C;  1PJ7 A;  1YCL A;  1Y1W C;  3S17 K;  1XXC A;  4FZB A;  1XZP A;  4GTA A;  1Y1W K;  2NVY A;  2E2H C;  3A8I A;  2E2H K;  3S14 K;  2P8T A;  3AH5 A;  2NVT C;  3N0C A;  1BGW A;  4FM9 A;  4GTE A;  1INN A;  5M5X K;  2NVT K;  3GTO C;  1GE9 A;  5L46 A;  3GTO K;  2EBB A;  1TWA C;  4KMU A;  3G4A A;  1TWA K;  2R92 C;  5IOR A;  3V4G A;  3OPF A;  2JA6 A;  4KC6 A;  3GTP A;  2R92 K;  4BBR C;  3PO3 C;  4OIP A;  1B4A A;  4P5B A;  3S15 C;  3PO3 K;  2GAG C;  5IP9 C;  3GTL A;  2NVQ C;  3HOU C;  3H3V D;  3S15 K;  5IP9 K;  3IPJ A;  2NVQ K;  3I4M C;  5M5Y K;  3I4M K;  4A3K C;  2NVX K;  3S1Q C;  4A3K K;  4PAA A;  3GTQ C;  3AD9 C;  3WOD A;  1F7V A;  3GTQ K;  4C3J K;  4BXX C;  2R7Z C;  5C4X K;  5JVO A;  2R7Z K;  1EH1 A;  1R9T C;  4O2D A;  1R9T K;  2W7V A;  2JA7 A;  3AD7 C;  4OIN A;  4LLG A;  4J3N A;  2PA8 L;  4A3B C;  1VH2 A;  2ZUF A;  4A3B K;  5CHP A;  2JA6 K;  5IOT A;  3HOY K;  2ZUE A;  4A3L C;  4LQY A;  4A3L K;  3ERE D;  4LR2 A;  5M3M K;  1XXA A;  5TMF A;  4BKW A;  1SFO C;  4BBS C;  1HI9 A;  1XZQ A;  5FLM C;  4LK1 A;  4BLB A;  3PO2 C;  4LK0 A;  1IQ0 A;  3PO2 K;  2P5M A;  4XSZ A;  3LAJ A;  5IYB C;  3GTK C;  2B63 C;  3GTK K;  2B63 K;  2A6H A;  1AB4 A;  4OIQ A;  1O24 A;  1V5V A;  1WSV A;  1ZXO A;  5C44 C;  3HKZ D;  5C44 K;  3FOE A;  5JFE A;  3GTG A;  2GSO A;  4KAS A;  3S1R C;  1Y1W A;  4Y7N C;  3FHZ A;  3M3Y C;  3NUH A;  2E2H A;  4KM8 A;  3GEE A;  4Y7N K;  4G0W A;  1IBA A;  2FQO A;  1WOR A;  1ISE A;  4GTF A;  4YG2 A;  3GTO A;  4A3D C;  3TFH A;  4A3D K;  1WOP A;  4AYB D;  1TWA A;  4BY1 K;  4G7H A;  2R92 A;  1F93 A;  4JK1 A; 
#chains in the Genus database with same CATH homology
 1DCH A;  1RU0 A;  3HXA A;  4LOW A;  2EBB A;  4WIL A;  4C45 A;  1DCP A;  1USM A;  1USO A;  2V6S A;  3JST A;  2V6U A;  2V6T A;  1F93 A;  1DCO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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