1USMA

Dcoh, a bifunctional protein-binding transcriptional coactivator, pro9leu mutant
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
80
structure length
77
Chain Sequence
MDWEERKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALLQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
publication title Crystal Structure of Transcriptional Coactivator DCoH from Thermus Thermophilus
rcsb
source organism Thermus thermophilus
molecule tags Transcriptional stimulator
total genus 23
structure length 77
sequence length 80
ec nomenclature
pdb deposition date 2003-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1usmA00
3JSTA 1RU0A 2EBBA 2V6SA 1F93A 1DCPA 2V6UA 3HXAA 4C45A 1DCOA 4LOWA 1USMA 4WILA 1DCHA 1USOA 2V6TA
chains in the Genus database with same CATH superfamily
4XSZA 3MMLB 2NVYK 3SZYA 4BY1C 4KN4A 4XCHA 4BXXK 2EBBA 1F93A 4Y7NC 5EGEA 4AYBL 4DDQA 3GEIA 4A3BC 1TWAK 4C3JK 2ZUEA 3S15K 1F9NA 4ZH4A 3CAGA 5IOTA 4A3LC 3GTLA 1TWGC 3HOUC 3H0GK 3PO3K 1J6VA 1R9TC 1SFOK 4Y52K 2NVYC 3IPJA 3OEPA 1I50K 5EGHA 4AH6A 4BLBA 4BXXC 1WCMK 2A69A 4QIWD 4KASA 4WJ4A 3GTGK 1JVIA 1TWAC 4KARA 4C3JC 3S15C 1WQHA 3S1NK 4A3GK 1TWGA 4YFKA 4LLGA 1I3QK 3NUHA 4J3NA 1K83K 1J6XA 1VLOA 3AQOA 3H0GC 3PO3C 3LAPA 1SFOC 2NVTK 4Y52C 4QIWL 1SMYA 2NVYA 2R93A 4KMHA 1O25A 3PO2K 1WCMC 3GIRA 1XXAA 4C3HK 2W7VA 1I6HK 1TWAA 4OIQA 2GAGC 3V4GA 3FOFA 1VH2A 3S1NC 3A8KA 4A3GC 2GSOA 2NVQK 3M4OK 4PABA 2R92K 3M3YK 1K83C 2GAHC 3H0GA 5E68A 4YFNA 2NVTC 1SFOA 1WSVA 2Y0SD 1DD5A 5TMCA 1DCPA 3HOVK 2PA8D 1I50A 1ISEA 5IP9K 3S16K 2E2JK 3PO2C 3ADAC 5FJ8K 4BBSK 3HOWK 1TWFK 5IYBK 3ERED 4MQ9A 1TWHK 4C3HC 1I6HC 3GTGA 1WSRA 5TMFA 4A3CK 1O28A 4LK1A 3FHZA 1YNNA 1X31C 2Y0SL 1EH1A 2NVQC 1I3QA 2PA8L 3M4OC 4OIRA 2R92C 3M3YC 1RU0A 1K83A 4KDDA 4LQYA 4X6AK 5D4DA 1IQ0A 3BP8C 1DCOA 3T00A 3GTOK 2A68A 3HOVC 5IP9C 4KC6A 2O5JA 3S16C 4KMDA 1YCLA 4BBSC 3HOWC 1TWFC 5IYBC 1TWHC 4KMUA 5HL8A 4OIPA 3TFJA 4A3CC 1KQ4A 2GSUA 3AD7C 4M1XA 3WODA 1YX2A 1WOSA 1XXCA 2RH6A 3AD9C 5C4XK 3G4AA 1BJTA 3FKIK 3G4CA 3N0CA 2Y3PA 2R92A 4KM9A 4X6AC 5IOSA 3GTOC 4BKWA 2FQOA 1XZPA 1TWCC 2P5MA 4GTEA 5JVOA 1VRQC 2B63A 3T01A 2V6TA 3S0XA 2JH3A 1TWFA 5C3EK 1TWHA 3GTJA 4C3IK 1USOA 1EQRA 4LJZA 5IP7C 4KAWX 4GZYA 2NVXK 5C4XC 1YNJA 1BS2A 3FKIC 4BLAA 1IE0A 1IL2A 3Q3QA 5M5XK 1I6VA 4BY7K 3GTOA 3HXAA 1L0WA 1F7VA 1IW7A 4GTFA 4Q4ZA 4C45A 2XCRB 3GTPK 1EI6A 5FLMK 4GTDA 5C3EC 3HOXK 2ZUFA 1AB4A 4C3IC 4P9SA 4MEXA 1R9TA 1XPPA 3RZDK 2NVXC 3LAJA 1O26A 1J98A 5IYCK 3S2DK 1WOOA 5C44K 3FKIA 1WQGA 4QJVA 2E2IK 3GEHA 3RZOK 2RGRA 4BY7C 3T02A 2JA8K 4GT9A 4MEYA 3HOZK 5JFEA 3VA7A 3OREA 3JSTA 3GTPC 5FLMC 3HOXC 4KATA 2KWAA 4QJVB 2R7ZK 1WQFA 5M5YK 5L46A 1XZQA 4A3EK 2FQTA 3S1RK 5CJ9A 3RZDC 2NVXA 2PHCB 4G7ZA 3LPXA 4ILDA 5IYCC 2PPBA 3S2DC 5C44C 1B4AA 4KMAA 2E2IC 3RZOC 1WCMA 3HKZD 1DCHA 2JA8C 3EQLA 1Y1WK 3HOZC 1EK8A 2O5IA 3GTPA 2CFAA 4XLPA 3N3YA 2R7ZC 4A3JK 1IBAA 4A3EC 3S1RC 4A3DK 3HKZL 1TWCK 4P5AA 4XLNA 3S14K 1O2AA 1Y1VK 3TFIA 5CHPA 2E2IA 3AQPA 3GTKK 3BUEA 2V6SA 1BDFA 4G0WA 5IP7K 1EFWA 1Y1WC 2E2HK 4GTLA 5IORA 4KB2A 3OPFA 1O29A 1PJ5A 2JA7K 4XSXA 3I4NK 4FM9A 4A3JC 3S1MK 1PJ6A 3S2HK 1JOEA 3S17K 5C4JK 3A8JA 3BP3A 4A3DC 1O24A 1ZVUA 1O2FB 3S14C 1Y1VC 4LK0A 1PJ7A 4YFXA 3GTKC 1WIHA 4KB4A 4A3IK 4YG2A 3GDZA 4GFQA 4A3KK 2E2HC 2R93K 1Y1WA 2WB1D 1USMA 1HQMA 1XZPB 4BBRK 2JA7C 2BE5A 3I4NC 4PAAA 3S1MC 3S2HC 3K7AK 3S17C 3GTQK 5C4JC 3SZZA 1ZYRA 1V5VA 1TWCA 4RMFA 2XCQA 3CQZK 1Y1VA 2YU9K 5M3FK 2WB1L 4A93K 3I4MK 4A3FK 4FZBA 1O27A 3GTKA 4A3IC 2A6EA 4A3KC 2R93C 2E2HA 1UV7A 3GTMK 2JA5K 4BBRC 1B4BA 2JA7A 2D6FC 2JA6K 3HOYK 1VGXA 3K7AC 3GTQC 1VJEA 1JQWA 1XXBA 4C2MK 4KN7A 1WOPA 3CQZC 2YU9C 4WILA 4WJ3M 4A93C 2VUMK 4A3FC 3I4MC 4Q5SA 4A3MK 2PMZD 4GTCA 4KM8A 4NOIA 1I50C 3DXJA 3GTMC 1WORA 4GTAA 2JA5C 3FOEA 3AD8C 1ZBSA 2V6UA 2JA6C 3HOYC 3QX3A 3GTGC 4OIOA 3TTGA 3GTQA 1GE9A 3N0BA 4C2MC 1C0AA 2CW0A 2PMZL 3GEEA 1XZQB 3H3VD 4G7HA 3CQZA 1I3QC 5M5WK 2YU9A 2XCOA 3AH5A 5IOQA 2VUMC 4A3MC 4LOWA 3S1QK 1INNA 2WAQD 4OINA 4LR2A 5M3MK 4P5BA 3GTMA 2B63K 4GTBA 2JA5A 5IYDK 3GTLK 2A6HA 3GSIA 3GTJK 2JA6A 3A8IA 3H3VL 2CFAB 4G0VA 5TJ3A 4BY1K 2WAQL 4JK1A 2VUMA 4Y7NK 3S1QC 4G0UA 1HI9A 1IS1A 4O2DA 2R7ZA 1ZQ1C 2P8TA 4A3BK 1G51A 1BGWA 3TFHA 2B63C 3L4JA 2E2JC 4A3LK 4AYBD 5IYDC 1ZXOA 3GTLC 1J6WA 1O2BA 3GTJC 1TWGK 1F7UA 3L4KA 2GSNA 3HOUK 2ZFZA 1R9TK 4G7OA
chains in the Genus database with same CATH topology
3JSTA 1RU0A 2EBBA 2V6SA 1F93A 1DCPA 2V6UA 3HXAA 4C45A 1DCOA 4LOWA 1USMA 4WILA 1DCHA 1USOA 2V6TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JST A;  1RU0 A;  2EBB A;  2V6S A;  1F93 A;  1DCP A;  2V6U A;  3HXA A;  4C45 A;  1DCO A;  4LOW A;  1USM A;  4WIL A;  1DCH A;  1USO A;  2V6T A; 
#chains in the Genus database with same CATH topology
 4XSZ A;  3MML B;  2NVY K;  3SZY A;  4BY1 C;  4KN4 A;  4XCH A;  4BXX K;  2EBB A;  1F93 A;  4Y7N C;  5EGE A;  4AYB L;  4DDQ A;  3GEI A;  4A3B C;  1TWA K;  4C3J K;  2ZUE A;  3S15 K;  1F9N A;  4ZH4 A;  3CAG A;  5IOT A;  4A3L C;  3GTL A;  1TWG C;  3HOU C;  3H0G K;  3PO3 K;  1J6V A;  1R9T C;  1SFO K;  4Y52 K;  2NVY C;  3IPJ A;  3OEP A;  1I50 K;  5EGH A;  4AH6 A;  4BLB A;  4BXX C;  1WCM K;  2A69 A;  4QIW D;  4KAS A;  4WJ4 A;  3GTG K;  1JVI A;  1TWA C;  4KAR A;  4C3J C;  3S15 C;  1WQH A;  3S1N K;  4A3G K;  1TWG A;  4YFK A;  4LLG A;  1I3Q K;  3NUH A;  4J3N A;  1K83 K;  1J6X A;  1VLO A;  3AQO A;  3H0G C;  3PO3 C;  3LAP A;  1SFO C;  2NVT K;  4Y52 C;  4QIW L;  1SMY A;  2NVY A;  2R93 A;  4KMH A;  1O25 A;  3PO2 K;  1WCM C;  3GIR A;  1XXA A;  4C3H K;  2W7V A;  1I6H K;  1TWA A;  4OIQ A;  2GAG C;  3V4G A;  3FOF A;  1VH2 A;  3S1N C;  3A8K A;  4A3G C;  2GSO A;  2NVQ K;  3M4O K;  4PAB A;  2R92 K;  3M3Y K;  1K83 C;  2GAH C;  3H0G A;  5E68 A;  4YFN A;  2NVT C;  1SFO A;  1WSV A;  2Y0S D;  1DD5 A;  5TMC A;  1DCP A;  3HOV K;  2PA8 D;  1I50 A;  1ISE A;  5IP9 K;  3S16 K;  2E2J K;  3PO2 C;  3ADA C;  5FJ8 K;  4BBS K;  3HOW K;  1TWF K;  5IYB K;  3ERE D;  4MQ9 A;  1TWH K;  4C3H C;  1I6H C;  3GTG A;  1WSR A;  5TMF A;  4A3C K;  1O28 A;  4LK1 A;  3FHZ A;  1YNN A;  1X31 C;  2Y0S L;  1EH1 A;  2NVQ C;  1I3Q A;  2PA8 L;  3M4O C;  4OIR A;  2R92 C;  3M3Y C;  1RU0 A;  1K83 A;  4KDD A;  4LQY A;  4X6A K;  5D4D A;  1IQ0 A;  3BP8 C;  1DCO A;  3T00 A;  3GTO K;  2A68 A;  3HOV C;  5IP9 C;  4KC6 A;  2O5J A;  3S16 C;  4KMD A;  1YCL A;  4BBS C;  3HOW C;  1TWF C;  5IYB C;  1TWH C;  4KMU A;  5HL8 A;  4OIP A;  3TFJ A;  4A3C C;  1KQ4 A;  2GSU A;  3AD7 C;  4M1X A;  3WOD A;  1YX2 A;  1WOS A;  1XXC A;  2RH6 A;  3AD9 C;  5C4X K;  3G4A A;  1BJT A;  3FKI K;  3G4C A;  3N0C A;  2Y3P A;  2R92 A;  4KM9 A;  4X6A C;  5IOS A;  3GTO C;  4BKW A;  2FQO A;  1XZP A;  1TWC C;  2P5M A;  4GTE A;  5JVO A;  1VRQ C;  2B63 A;  3T01 A;  2V6T A;  3S0X A;  2JH3 A;  1TWF A;  5C3E K;  1TWH A;  3GTJ A;  4C3I K;  1USO A;  1EQR A;  4LJZ A;  5IP7 C;  4KAW X;  4GZY A;  2NVX K;  5C4X C;  1YNJ A;  1BS2 A;  3FKI C;  4BLA A;  1IE0 A;  1IL2 A;  3Q3Q A;  5M5X K;  1I6V A;  4BY7 K;  3GTO A;  3HXA A;  1L0W A;  1F7V A;  1IW7 A;  4GTF A;  4Q4Z A;  4C45 A;  2XCR B;  3GTP K;  1EI6 A;  5FLM K;  4GTD A;  5C3E C;  3HOX K;  2ZUF A;  1AB4 A;  4C3I C;  4P9S A;  4MEX A;  1R9T A;  1XPP A;  3RZD K;  2NVX C;  3LAJ A;  1O26 A;  1J98 A;  5IYC K;  3S2D K;  1WOO A;  5C44 K;  3FKI A;  1WQG A;  4QJV A;  2E2I K;  3GEH A;  3RZO K;  2RGR A;  4BY7 C;  3T02 A;  2JA8 K;  4GT9 A;  4MEY A;  3HOZ K;  5JFE A;  3VA7 A;  3ORE A;  3JST A;  3GTP C;  5FLM C;  3HOX C;  4KAT A;  2KWA A;  4QJV B;  2R7Z K;  1WQF A;  5M5Y K;  5L46 A;  1XZQ A;  4A3E K;  2FQT A;  3S1R K;  5CJ9 A;  3RZD C;  2NVX A;  2PHC B;  4G7Z A;  3LPX A;  4ILD A;  5IYC C;  2PPB A;  3S2D C;  5C44 C;  1B4A A;  4KMA A;  2E2I C;  3RZO C;  1WCM A;  3HKZ D;  1DCH A;  2JA8 C;  3EQL A;  1Y1W K;  3HOZ C;  1EK8 A;  2O5I A;  3GTP A;  2CFA A;  4XLP A;  3N3Y A;  2R7Z C;  4A3J K;  1IBA A;  4A3E C;  3S1R C;  4A3D K;  3HKZ L;  1TWC K;  4P5A A;  4XLN A;  3S14 K;  1O2A A;  1Y1V K;  3TFI A;  5CHP A;  2E2I A;  3AQP A;  3GTK K;  3BUE A;  2V6S A;  1BDF A;  4G0W A;  5IP7 K;  1EFW A;  1Y1W C;  2E2H K;  4GTL A;  5IOR A;  4KB2 A;  3OPF A;  1O29 A;  1PJ5 A;  2JA7 K;  4XSX A;  3I4N K;  4FM9 A;  4A3J C;  3S1M K;  1PJ6 A;  3S2H K;  1JOE A;  3S17 K;  5C4J K;  3A8J A;  3BP3 A;  4A3D C;  1O24 A;  1ZVU A;  1O2F B;  3S14 C;  1Y1V C;  4LK0 A;  1PJ7 A;  4YFX A;  3GTK C;  1WIH A;  4KB4 A;  4A3I K;  4YG2 A;  3GDZ A;  4GFQ A;  4A3K K;  2E2H C;  2R93 K;  1Y1W A;  2WB1 D;  1USM A;  1HQM A;  1XZP B;  4BBR K;  2JA7 C;  2BE5 A;  3I4N C;  4PAA A;  3S1M C;  3S2H C;  3K7A K;  3S17 C;  3GTQ K;  5C4J C;  3SZZ A;  1ZYR A;  1V5V A;  1TWC A;  4RMF A;  2XCQ A;  3CQZ K;  1Y1V A;  2YU9 K;  5M3F K;  2WB1 L;  4A93 K;  3I4M K;  4A3F K;  4FZB A;  1O27 A;  3GTK A;  4A3I C;  2A6E A;  4A3K C;  2R93 C;  2E2H A;  1UV7 A;  3GTM K;  2JA5 K;  4BBR C;  1B4B A;  2JA7 A;  2D6F C;  2JA6 K;  3HOY K;  1VGX A;  3K7A C;  3GTQ C;  1VJE A;  1JQW A;  1XXB A;  4C2M K;  4KN7 A;  1WOP A;  3CQZ C;  2YU9 C;  4WIL A;  4WJ3 M;  4A93 C;  2VUM K;  4A3F C;  3I4M C;  4Q5S A;  4A3M K;  2PMZ D;  4GTC A;  4KM8 A;  4NOI A;  1I50 C;  3DXJ A;  3GTM C;  1WOR A;  4GTA A;  2JA5 C;  3FOE A;  3AD8 C;  1ZBS A;  2V6U A;  2JA6 C;  3HOY C;  3QX3 A;  3GTG C;  4OIO A;  3TTG A;  3GTQ A;  1GE9 A;  3N0B A;  4C2M C;  1C0A A;  2CW0 A;  2PMZ L;  3GEE A;  1XZQ B;  3H3V D;  4G7H A;  3CQZ A;  1I3Q C;  5M5W K;  2YU9 A;  2XCO A;  3AH5 A;  5IOQ A;  2VUM C;  4A3M C;  4LOW A;  3S1Q K;  1INN A;  2WAQ D;  4OIN A;  4LR2 A;  5M3M K;  4P5B A;  3GTM A;  2B63 K;  4GTB A;  2JA5 A;  5IYD K;  3GTL K;  2A6H A;  3GSI A;  3GTJ K;  2JA6 A;  3A8I A;  3H3V L;  2CFA B;  4G0V A;  5TJ3 A;  4BY1 K;  2WAQ L;  4JK1 A;  2VUM A;  4Y7N K;  3S1Q C;  4G0U A;  1HI9 A;  1IS1 A;  4O2D A;  2R7Z A;  1ZQ1 C;  2P8T A;  4A3B K;  1G51 A;  1BGW A;  3TFH A;  2B63 C;  3L4J A;  2E2J C;  4A3L K;  4AYB D;  5IYD C;  1ZXO A;  3GTL C;  1J6W A;  1O2B A;  3GTJ C;  1TWG K;  1F7U A;  3L4K A;  2GSN A;  3HOU K;  2ZFZ A;  1R9T K;  4G7O A; 
#chains in the Genus database with same CATH homology
 3JST A;  1RU0 A;  2EBB A;  2V6S A;  1F93 A;  1DCP A;  2V6U A;  3HXA A;  4C45 A;  1DCO A;  4LOW A;  1USM A;  4WIL A;  1DCH A;  1USO A;  2V6T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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