3TFHA

Dmsp-dependent demethylase from p. ubique - apo
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
369
structure length
369
Chain Sequence
b'MKNFSIAKSRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSDVIFFAKGLASGHKFDVKIVEPVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GcvT-like Aminomethyltransferase protein
publication title Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique.
pubmed doi rcsb
source organism Candidatus pelagibacter ubique
molecule tags Transferase
total genus 109
structure length 369
sequence length 369
chains with identical sequence B
ec nomenclature ec 2.1.1.269: Dimethylsulfoniopropionate demethylase.
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01571 GCV_T Aminomethyltransferase folate-binding domain
A PF08669 GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 3tfhA00
3A8IA 3TFIA 1VLOA 3AD8C 2GAHC 1PJ6A 3ADAC 4PAAA 4PABA 1X31C 1PJ7A 3GIRA 1VRQC 4P9SA 3TTGA 1V5VA 1WOPA 1WORA 1WSVA 1WOOA 3AD7C 3GEEA 3GEIA 3TFHA 3GEHA 3A8KA 1XZQB 1XZPB 1WOSA 2GAGC 1PJ5A 1WSRA 3AD9C 1XZQA 1XZPA 3A8JA 3GSIA 3TFJA 5L46A 1YX2A
chains in the Genus database with same CATH superfamily
3GTKC 1I50K 3H3VL 3S1NK 3RZOC 3N0BA 5CHPA 3GTQK 1I3QK 2R92K 2E2IC 3HOVC 3S15C 4ILDA 1DD5A 1WQFA 3FKIC 4A3MK 1L0WA 4BLBA 2P8TA 5M3MK 4BY7C 2XCRB 3RZOK 4LK1A 1WCMC 2NVYC 2YU9A 4KATA 5M5YK 4A3FC 4PABA 2E2IK 2WAQL 3S15K 3CAGA 3PO2K 4KDDA 3I4NK 1TWCK 4OINA 1USMA 1WSVA 2JA5A 1J6VA 5C44C 4BLAA 4MQ9A 4QIWD 3HOZC 2R7ZA 4BXXC 5C3EC 4KAWX 1XXBA 5L46A 4KM8A 3A8IA 1B4AA 4BBRK 4G0VA 2WB1L 5FLMK 1EFWA 1VRQC 5JVOA 4QJVB 5C3EK 2A68A 4WJ4A 3M3YK 1TWGA 1F7VA 1ZVUA 3HXAA 5C4XC 2NVQC 1XZQA 2JH3A 2E2JK 2YU9C 4G7OA 3S17K 3L4KA 4C2MK 3CQZA 4KMUA 4GTFA 2Y0SD 4LLGA 3GTJA 2JA5C 1YCLA 1TWHC 2P5MA 4C3HC 4P9SA 1K83A 1O28A 3S2DC 5M3FK 3BUEA 2R7ZC 4P5BA 2GSNA 5C4XK 4LK0A 1VGXA 4GTDA 4BY1K 2E2HA 3LPXA 3TFHA 3S16C 3GTGA 1BGWA 1O25A 4JK1A 2GAGC 3L4JA 3MMLB 1I6HC 1IW7A 3HOUC 1TWHK 5IYDK 3LAPA 1XXAA 4A3KC 4C3HK 1INNA 3SZYA 3S2DK 3GTPA 3ADAC 1YNNA 4C3IC 4GTAA 4QIWL 4OIQA 1WORA 1TWGC 3GDZA 1WOOA 4RMFA 1R9TK 1O27A 4A3EK 2WB1D 2XCQA 3S1RK 2B63A 4AYBD 3CQZC 3GTMK 3T00A 4G0UA 1O24A 3GTJC 1BJTA 5IYBK 1RU0A 1SFOA 4YFNA 1Y1WK 3H0GK 1K83C 4DDQA 3IPJA 1VH2A 1PJ7A 4GTEA 2A69A 3HOYC 4A3CC 4KMAA 2GSOA 4KB4A 5IP9C 3GTGC 4GFQA 4A3LC 2O5IA 4G0WA 3BP3A 1ZBSA 2RGRA 1ZQ1C 2JA7A 4GZYA 2PMZD 2JA6K 5E68A 2Y0SL 5HL8A 5M5WK 3GTKK 3GTPC 1WQHA 4Y7NC 4OIRA 3GTOA 2FQTA 3AQPA 1BS2A 2EBBA 2R93A 5IP9K 1VLOA 3RZDC 2KWAA 3HOXC 3HOVK 1IBAA 4NOIA 1UV7A 5JFEA 1JQWA 3FKIK 4A3IC 2FQOA 2B63C 1DCOA 1EI6A 1G51A 3K7AC 3S14C 3N3YA 1O29A 3T01A 4Y7NK 1SFOC 4BY7K 1WCMK 1BDFA 1TWAA 2NVYK 1F7UA 4LQYA 3VA7A 3AH5A 3TFJA 3PO3C 4A3FK 4GTBA 2NVXA 3HOWC 3Q3QA 1IE0A 4G7ZA 4A3IK 3N0CA 2JA7C 5C44K 4MEYA 3T02A 3AD7C 1SFOK 4AYBL 3HOZK 5TJ3A 4BXXK 1Y1VA 1JOEA 5C4JC 3GTOC 1SMYA 5IOSA 1O2BA 2R93C 3HOWK 2XCOA 4A3BC 4C3JC 3AD8C 2GAHC 1XXCA 2A6HA 3AQOA 3OEPA 2PMZL 1V5VA 4WJ3M 4XSZA 1EH1A 1I50A 3S1QC 1TWAC 3OPFA 4YFKA 5IP7C 2NVQK 2YU9K 1C0AA 1F9NA 4GT9A 2NVXC 1I6VA 1I3QA 2R92A 3A8JA 2JA5K 3SZZA 5IYCC 3HKZD 3FOFA 3GTLA 1EK8A 4GTLA 1X31C 3G4CA 2R7ZK 4KN7A 1TWAK 1Y1VC 3TTGA 5EGHA 1IQ0A 3S16K 1HI9A 1TWFA 3S2HC 1ISEA 4A3JC 1I6HK 5IORA 3S1MC 3HOUK 4BBSC 1TWCA 2O5JA 5TMFA 4A3KK 1YX2A 3GEHA 4C3IK 1B4BA 2V6TA 5IOQA 4Q4ZA 1HQMA 1PJ6A 1TWGK 1I50C 3OREA 4KMDA 1DCPA 2E2HC 1O2AA 4C45A 4XLPA 4FM9A 2Y3PA 3GEEA 1I3QC 2R92C 3CQZK 2PA8D 4O2DA 4QJVA 3GTJK 1ZYRA 1WOSA 1WSRA 5D4DA 3GTLC 1K83K 4LR2A 4KN4A 3HOYK 4A3CK 1WIHA 2E2HK 3M4OC 3FHZA 2CW0A 3GTGK 4A3LK 3GIRA 1TWFC 3JSTA 1XPPA 2VUMA 3PO2C 3GEIA 3I4NC 4LOWA 1TWCC 4G7HA 4YG2A 4BKWA 3A8KA 4YFXA 3GTLK 3EQLA 3GTPK 4P5AA 1XZPB 1PJ5A 1J6WA 3WODA 3HKZL 1KQ4A 1O2FB 2BE5A 3BP8C 3NUHA 4OIOA 3M4OK 1JVIA 3RZDK 1IL2A 4J3NA 3HOXK 1TWFK 4KMHA 4KASA 4KARA 2PPBA 2A6EA 2B63K 4BBRC 4XCHA 2CFAB 1TWHA 3K7AK 3S14K 5FLMC 4A3GC 4Y52C 1O26A 1F93A 3PO3K 2JA8C 4MEXA 3M3YC 4XSXA 1R9TA 2E2JC 3S17C 2RH6A 2JA7K 4C2MC 4PAAA 2VUMC 4A3GK 4GTCA 3GTMA 2PHCB 1WQGA 3QX3A 4Y52K 4M1XA 2PA8L 2NVTC 3H3VD 1DCHA 5C4JK 1Y1WA 3H0GA 1YNJA 3GTOK 1GE9A 3G4AA 2JA8K 5EGEA 2W7VA 2R93K 4A3BK 4BY1C 4AH6A 3GTQA 1J6XA 2ZFZA 4C3JK 1IS1A 2VUMK 2V6SA 2JA6A 2NVTK 5IYDC 3S0XA 1J98A 4XLNA 4A3DC 4A93C 3GTKA 4OIPA 3S1QK 5IP7K 2WAQD 1ZXOA 3ERED 2NVXK 1R9TC 2E2IA 5TMCA 4KC6A 3V4GA 4X6AC 4A3EC 4KB2A 5FJ8K 3S1RC 1XZPA 3FKIA 5IYCK 3I4MC 4FZBA 4A3DK 3GTMC 3LAJA 3DXJA 4A93K 5CJ9A 3TFIA 5IYBC 1Y1VK 1Y1WC 3H0GC 2ZUFA 1USOA 1WCMA 2D6FC 2NVYA 2GSUA 3S2HK 4ZH4A 1WOPA 3S1NC 4Q5SA 3FOEA 4A3JK 3GTQC 4X6AK 2CFAA 4WILA 4LJZA 3S1MK 2V6UA 4BBSK 5IOTA 1VJEA 1AB4A 3I4MK 1XZQB 5M5XK 1EQRA 3AD9C 4A3MC 2JA6C 4KM9A 2ZUEA 3GSIA
chains in the Genus database with same CATH topology
3A8IA 3TFIA 1VLOA 3AD8C 2GAHC 1PJ6A 3ADAC 4PAAA 4PABA 1X31C 1PJ7A 3GIRA 1VRQC 4P9SA 3TTGA 1V5VA 1WOPA 1WORA 1WSVA 1WOOA 3AD7C 3GEEA 3GEIA 3TFHA 3GEHA 3A8KA 1XZQB 1XZPB 1WOSA 2GAGC 1PJ5A 1WSRA 3AD9C 1XZQA 1XZPA 3A8JA 3GSIA 3TFJA 5L46A 1YX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A8I A;  3TFI A;  1VLO A;  3AD8 C;  2GAH C;  1PJ6 A;  3ADA C;  4PAA A;  4PAB A;  1X31 C;  1PJ7 A;  3GIR A;  1VRQ C;  4P9S A;  3TTG A;  1V5V A;  1WOP A;  1WOR A;  1WSV A;  1WOO A;  3AD7 C;  3GEE A;  3GEI A;  3TFH A;  3GEH A;  3A8K A;  1XZQ B;  1XZP B;  1WOS A;  2GAG C;  1PJ5 A;  1WSR A;  3AD9 C;  1XZQ A;  1XZP A;  3A8J A;  3GSI A;  3TFJ A;  5L46 A;  1YX2 A; 
#chains in the Genus database with same CATH topology
 3GTK C;  1I50 K;  3H3V L;  3S1N K;  3RZO C;  3N0B A;  5CHP A;  3GTQ K;  1I3Q K;  2R92 K;  2E2I C;  3HOV C;  3S15 C;  4ILD A;  1DD5 A;  1WQF A;  3FKI C;  4A3M K;  1L0W A;  4BLB A;  2P8T A;  5M3M K;  4BY7 C;  2XCR B;  3RZO K;  4LK1 A;  1WCM C;  2NVY C;  2YU9 A;  4KAT A;  5M5Y K;  4A3F C;  4PAB A;  2E2I K;  2WAQ L;  3S15 K;  3CAG A;  3PO2 K;  4KDD A;  3I4N K;  1TWC K;  4OIN A;  1USM A;  1WSV A;  2JA5 A;  1J6V A;  5C44 C;  4BLA A;  4MQ9 A;  4QIW D;  3HOZ C;  2R7Z A;  4BXX C;  5C3E C;  4KAW X;  1XXB A;  5L46 A;  4KM8 A;  3A8I A;  1B4A A;  4BBR K;  4G0V A;  2WB1 L;  5FLM K;  1EFW A;  1VRQ C;  5JVO A;  4QJV B;  5C3E K;  2A68 A;  4WJ4 A;  3M3Y K;  1TWG A;  1F7V A;  1ZVU A;  3HXA A;  5C4X C;  2NVQ C;  1XZQ A;  2JH3 A;  2E2J K;  2YU9 C;  4G7O A;  3S17 K;  3L4K A;  4C2M K;  3CQZ A;  4KMU A;  4GTF A;  2Y0S D;  4LLG A;  3GTJ A;  2JA5 C;  1YCL A;  1TWH C;  2P5M A;  4C3H C;  4P9S A;  1K83 A;  1O28 A;  3S2D C;  5M3F K;  3BUE A;  2R7Z C;  4P5B A;  2GSN A;  5C4X K;  4LK0 A;  1VGX A;  4GTD A;  4BY1 K;  2E2H A;  3LPX A;  3TFH A;  3S16 C;  3GTG A;  1BGW A;  1O25 A;  4JK1 A;  2GAG C;  3L4J A;  3MML B;  1I6H C;  1IW7 A;  3HOU C;  1TWH K;  5IYD K;  3LAP A;  1XXA A;  4A3K C;  4C3H K;  1INN A;  3SZY A;  3S2D K;  3GTP A;  3ADA C;  1YNN A;  4C3I C;  4GTA A;  4QIW L;  4OIQ A;  1WOR A;  1TWG C;  3GDZ A;  1WOO A;  4RMF A;  1R9T K;  1O27 A;  4A3E K;  2WB1 D;  2XCQ A;  3S1R K;  2B63 A;  4AYB D;  3CQZ C;  3GTM K;  3T00 A;  4G0U A;  1O24 A;  3GTJ C;  1BJT A;  5IYB K;  1RU0 A;  1SFO A;  4YFN A;  1Y1W K;  3H0G K;  1K83 C;  4DDQ A;  3IPJ A;  1VH2 A;  1PJ7 A;  4GTE A;  2A69 A;  3HOY C;  4A3C C;  4KMA A;  2GSO A;  4KB4 A;  5IP9 C;  3GTG C;  4GFQ A;  4A3L C;  2O5I A;  4G0W A;  3BP3 A;  1ZBS A;  2RGR A;  1ZQ1 C;  2JA7 A;  4GZY A;  2PMZ D;  2JA6 K;  5E68 A;  2Y0S L;  5HL8 A;  5M5W K;  3GTK K;  3GTP C;  1WQH A;  4Y7N C;  4OIR A;  3GTO A;  2FQT A;  3AQP A;  1BS2 A;  2EBB A;  2R93 A;  5IP9 K;  1VLO A;  3RZD C;  2KWA A;  3HOX C;  3HOV K;  1IBA A;  4NOI A;  1UV7 A;  5JFE A;  1JQW A;  3FKI K;  4A3I C;  2FQO A;  2B63 C;  1DCO A;  1EI6 A;  1G51 A;  3K7A C;  3S14 C;  3N3Y A;  1O29 A;  3T01 A;  4Y7N K;  1SFO C;  4BY7 K;  1WCM K;  1BDF A;  1TWA A;  2NVY K;  1F7U A;  4LQY A;  3VA7 A;  3AH5 A;  3TFJ A;  3PO3 C;  4A3F K;  4GTB A;  2NVX A;  3HOW C;  3Q3Q A;  1IE0 A;  4G7Z A;  4A3I K;  3N0C A;  2JA7 C;  5C44 K;  4MEY A;  3T02 A;  3AD7 C;  1SFO K;  4AYB L;  3HOZ K;  5TJ3 A;  4BXX K;  1Y1V A;  1JOE A;  5C4J C;  3GTO C;  1SMY A;  5IOS A;  1O2B A;  2R93 C;  3HOW K;  2XCO A;  4A3B C;  4C3J C;  3AD8 C;  2GAH C;  1XXC A;  2A6H A;  3AQO A;  3OEP A;  2PMZ L;  1V5V A;  4WJ3 M;  4XSZ A;  1EH1 A;  1I50 A;  3S1Q C;  1TWA C;  3OPF A;  4YFK A;  5IP7 C;  2NVQ K;  2YU9 K;  1C0A A;  1F9N A;  4GT9 A;  2NVX C;  1I6V A;  1I3Q A;  2R92 A;  3A8J A;  2JA5 K;  3SZZ A;  5IYC C;  3HKZ D;  3FOF A;  3GTL A;  1EK8 A;  4GTL A;  1X31 C;  3G4C A;  2R7Z K;  4KN7 A;  1TWA K;  1Y1V C;  3TTG A;  5EGH A;  1IQ0 A;  3S16 K;  1HI9 A;  1TWF A;  3S2H C;  1ISE A;  4A3J C;  1I6H K;  5IOR A;  3S1M C;  3HOU K;  4BBS C;  1TWC A;  2O5J A;  5TMF A;  4A3K K;  1YX2 A;  3GEH A;  4C3I K;  1B4B A;  2V6T A;  5IOQ A;  4Q4Z A;  1HQM A;  1PJ6 A;  1TWG K;  1I50 C;  3ORE A;  4KMD A;  1DCP A;  2E2H C;  1O2A A;  4C45 A;  4XLP A;  4FM9 A;  2Y3P A;  3GEE A;  1I3Q C;  2R92 C;  3CQZ K;  2PA8 D;  4O2D A;  4QJV A;  3GTJ K;  1ZYR A;  1WOS A;  1WSR A;  5D4D A;  3GTL C;  1K83 K;  4LR2 A;  4KN4 A;  3HOY K;  4A3C K;  1WIH A;  2E2H K;  3M4O C;  3FHZ A;  2CW0 A;  3GTG K;  4A3L K;  3GIR A;  1TWF C;  3JST A;  1XPP A;  2VUM A;  3PO2 C;  3GEI A;  3I4N C;  4LOW A;  1TWC C;  4G7H A;  4YG2 A;  4BKW A;  3A8K A;  4YFX A;  3GTL K;  3EQL A;  3GTP K;  4P5A A;  1XZP B;  1PJ5 A;  1J6W A;  3WOD A;  3HKZ L;  1KQ4 A;  1O2F B;  2BE5 A;  3BP8 C;  3NUH A;  4OIO A;  3M4O K;  1JVI A;  3RZD K;  1IL2 A;  4J3N A;  3HOX K;  1TWF K;  4KMH A;  4KAS A;  4KAR A;  2PPB A;  2A6E A;  2B63 K;  4BBR C;  4XCH A;  2CFA B;  1TWH A;  3K7A K;  3S14 K;  5FLM C;  4A3G C;  4Y52 C;  1O26 A;  1F93 A;  3PO3 K;  2JA8 C;  4MEX A;  3M3Y C;  4XSX A;  1R9T A;  2E2J C;  3S17 C;  2RH6 A;  2JA7 K;  4C2M C;  4PAA A;  2VUM C;  4A3G K;  4GTC A;  3GTM A;  2PHC B;  1WQG A;  3QX3 A;  4Y52 K;  4M1X A;  2PA8 L;  2NVT C;  3H3V D;  1DCH A;  5C4J K;  1Y1W A;  3H0G A;  1YNJ A;  3GTO K;  1GE9 A;  3G4A A;  2JA8 K;  5EGE A;  2W7V A;  2R93 K;  4A3B K;  4BY1 C;  4AH6 A;  3GTQ A;  1J6X A;  2ZFZ A;  4C3J K;  1IS1 A;  2VUM K;  2V6S A;  2JA6 A;  2NVT K;  5IYD C;  3S0X A;  1J98 A;  4XLN A;  4A3D C;  4A93 C;  3GTK A;  4OIP A;  3S1Q K;  5IP7 K;  2WAQ D;  1ZXO A;  3ERE D;  2NVX K;  1R9T C;  2E2I A;  5TMC A;  4KC6 A;  3V4G A;  4X6A C;  4A3E C;  4KB2 A;  5FJ8 K;  3S1R C;  1XZP A;  3FKI A;  5IYC K;  3I4M C;  4FZB A;  4A3D K;  3GTM C;  3LAJ A;  3DXJ A;  4A93 K;  5CJ9 A;  3TFI A;  5IYB C;  1Y1V K;  1Y1W C;  3H0G C;  2ZUF A;  1USO A;  1WCM A;  2D6F C;  2NVY A;  2GSU A;  3S2H K;  4ZH4 A;  1WOP A;  3S1N C;  4Q5S A;  3FOE A;  4A3J K;  3GTQ C;  4X6A K;  2CFA A;  4WIL A;  4LJZ A;  3S1M K;  2V6U A;  4BBS K;  5IOT A;  1VJE A;  1AB4 A;  3I4M K;  1XZQ B;  5M5X K;  1EQR A;  3AD9 C;  4A3M C;  2JA6 C;  4KM9 A;  2ZUE A;  3GSI A; 
#chains in the Genus database with same CATH homology
 3A8I A;  3TFI A;  1VLO A;  3AD8 C;  2GAH C;  1PJ6 A;  3ADA C;  4PAA A;  4PAB A;  1X31 C;  1PJ7 A;  3GIR A;  1VRQ C;  4P9S A;  3TTG A;  1V5V A;  1WOP A;  1WOR A;  1WSV A;  1WOO A;  3AD7 C;  3GEE A;  3GEI A;  3TFH A;  3GEH A;  3A8K A;  1XZQ B;  1XZP B;  1WOS A;  2GAG C;  1PJ5 A;  1WSR A;  3AD9 C;  1XZQ A;  1XZP A;  3A8J A;  3GSI A;  3TFJ A;  5L46 A;  1YX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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