3TFHA

Dmsp-dependent demethylase from p. ubique - apo
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
369
structure length
369
Chain Sequence
MKNFSIAKSRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSDVIFFAKGLASGHKFDVKIVEPVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GcvT-like Aminomethyltransferase protein
publication title Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique.
pubmed doi rcsb
source organism Candidatus pelagibacter ubique
molecule tags Transferase
total genus 109
structure length 369
sequence length 369
chains with identical sequence B
ec nomenclature ec 2.1.1.269: Dimethylsulfoniopropionate demethylase.
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01571 GCV_T Aminomethyltransferase folate-binding domain
A PF08669 GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 3tfhA00
1X31C 3GEHA 1WOOA 2GAGC 3AD7C 1XZQB 3TFHA 3A8KA 3GIRA 1WOSA 1VRQC 1WOPA 1PJ6A 1PJ7A 1WSVA 1XZQA 3GEIA 4P9SA 3TTGA 1XZPB 3A8IA 5L46A 1WORA 1VLOA 3GEEA 3A8JA 3AD9C 1WSRA 1PJ5A 1XZPA 3TFIA 3ADAC 3AD8C 1YX2A 4PABA 1V5VA 4PAAA 3TFJA 2GAHC 3GSIA
chains in the Genus database with same CATH superfamily
4A3IK 3GTJK 4JK1A 4GTFA 4YFKA 1O25A 3HOWK 1B4AA 1SFOC 2E2IA 1HI9A 1Y1VK 3GEIA 2O5IA 1XXBA 1J98A 3GTLA 1TWCC 4BKWA 4KAWX 2Y3PA 2A68A 1Y1VA 3HOXK 2E2JC 5C44K 4KM8A 4YFNA 4BLBA 4C2MK 3RZOC 1XXCA 5D4DA 5C4XC 2NVYK 3GTPK 2E2HK 1F9NA 1XPPA 4KMDA 1Y1WC 4MEXA 4YFXA 4G7HA 2JA8K 3A8IA 2YU9C 2NVYA 3AD9C 3M4OC 3GTPA 3VA7A 2E2HA 2PMZL 1WCMK 1YCLA 2JA7K 2V6TA 3FOFA 2NVQC 3AH5A 1I6HC 3GTKC 1C0AA 4C3JK 3S17K 3RZDC 5M5WK 1ZXOA 4A3EK 5C4JC 1WCMA 3S1RC 3I4NK 4ZH4A 1R9TK 2JA7A 2GSNA 1WOSA 1PJ6A 3H0GK 4QJVA 3CQZC 5HL8A 5IYDC 4OIOA 3OREA 4XLPA 4P5AA 1HQMA 4LLGA 1L0WA 4C3HC 2JA6A 4KN4A 4Y52C 2V6SA 3H0GA 1YNJA 3AQPA 3JSTA 4KN7A 2CFAB 3ADAC 4A3IC 3GTJC 4G0VA 1EH1A 3I4MK 3GTMA 1V5VA 1TWAK 5M5YK 2XCQA 3LAPA 3HOWC 1Y1VC 5IORA 5IYCK 4AYBL 3L4JA 1TWAA 2R92A 1WSVA 3OPFA 4A3LK 5EGEA 4Y7NK 1DD5A 5IYBK 3S16K 1G51A 2ZFZA 4J3NA 4LJZA 3HOXC 5C44C 3T01A 2D6FC 4C2MC 1ZBSA 4GZYA 2WB1D 3FHZA 2P5MA 2NVYC 4A3BK 1DCPA 3GTPC 4XCHA 3PO2K 2E2HC 3GTQA 4P5BA 5IOSA 3G4AA 2JA8C 4O2DA 2PA8L 5JVOA 1O27A 1WCMC 2JA7C 5FJ8K 1EI6A 4KMUA 2A69A 4C3JC 3S17C 2A6EA 3BP8C 4YG2A 4A3EC 3TFJA 3I4NC 1R9TC 2GSUA 4BY7K 2E2IK 2GAGC 3H0GC 4LR2A 4QIWL 5FLMK 3GTLK 2VUMK 2W7VA 3SZZA 2FQOA 5L46A 4RMFA 3GEEA 2FQTA 1WIHA 3I4MC 3BP3A 2RGRA 1TWAC 2VUMA 4KMHA 2XCOA 4BLAA 2GAHC 3HOUK 1WQFA 5IYCC 1WQGA 2WAQL 3V4GA 2CFAA 3GEHA 1ZYRA 1TWFK 3S2DK 4A3LC 3TFHA 4Y7NC 5IYBC 3EQLA 3S16C 3FKIK 3K7AK 1USMA 1BDFA 5IP7K 1USOA 2NVTK 2RH6A 1UV7A 1WORA 1TWFA 4G7ZA 1AB4A 3FKIA 4ILDA 4KATA 1O2FB 4A3BC 3SZYA 3HOZK 3GTOK 5M3MK 3PO2C 1INNA 4GT9A 1ISEA 5TJ3A 2NVXA 4MEYA 1X31C 1J6VA 4A3CK 5CJ9A 4KARA 4G0WA 2JA6K 3GTOA 1IS1A 4XLNA 3GTGK 1IQ0A 1I3QK 3NUHA 3QX3A 3GTMK 1JQWA 3GTGA 1WSRA 1I3QA 4BY7C 3S0XA 1RU0A 2E2IC 1WQHA 4OINA 2R92K 2PMZD 2O5JA 4LQYA 1O29A 5FLMC 3GTLC 1IL2A 3HKZL 2VUMC 3S1QK 4KASA 1EK8A 4A3MK 4A3KK 2V6UA 3H3VL 3S2HK 4XSZA 2R7ZA 1ZQ1C 4A3FK 5C3EK 4BBRK 5M5XK 3N0CA 1PJ5A 3HOUC 3GTQK 4GTLA 4GTCA 3GDZA 4PABA 1SFOA 1TWFC 1DCOA 3S2DC 1BS2A 2ZUEA 4KB2A 1WOOA 1BJTA 4A3GK 2XCRB 3FKIC 3K7AC 3M3YK 4Q4ZA 4GTAA 1VRQC 5IP7C 5TMCA 2NVTC 3HOYK 4AYBD 3HXAA 3HOZC 3GTOC 4BBSK 1O2BA 4BXXK 4GTBA 4DDQA 1YX2A 4AH6A 4A3CC 1I50K 4OIRA 4GFQA 2JA6C 1VJEA 3GTGC 1O28A 1XZQB 1I3QC 3A8KA 1F93A 3GTMC 1I50A 4LK0A 2PPBA 3S14K 3HOVK 1O26A 3T00A 5IP9K 2PA8D 2Y0SD 3AQOA 1F7VA 2R92C 4G0UA 3S15K 1K83K 3S1NK 3S1QC 3CQZA 2ZUFA 2CW0A 5IOQA 4A3MC 3S1MK 4A3KC 1J6WA 3S2HC 1TWGK 4BY1K 3FOEA 2KWAA 1K83A 4WJ3M 1WOPA 4KM9A 4LOWA 4A3FC 4C3IK 5C3EC 4X6AK 3GTJA 4BBRC 1XXAA 4QIWD 2R93K 1XZPB 1TWGA 1VLOA 4WILA 3GTQC 2NVXK 1BGWA 3OEPA 4A93K 3G4CA 2R93A 4A3GC 3GSIA 4G7OA 4A3DK 3M3YC 4A3JK 3PO3K 1J6XA 3ERED 2EBBA 4OIQA 3HOYC 4KB4A 4WJ4A 2WAQD 2PHCB 5JFEA 4BBSC 1DCHA 2JH3A 4KMAA 4OIPA 2B63K 4BXXC 3A8JA 1EQRA 3Q3QA 3MMLB 1I50C 1O24A 3TFIA 4C45A 3LPXA 1TWHK 4PAAA 2JA5K 2B63A 1YNNA 3CAGA 5TMFA 2R7ZK 1VH2A 4GTEA 3T02A 3S14C 3HOVC 1SMYA 3GIRA 4M1XA 1TWHA 5EGHA 1JVIA 2JA5A 1XZQA 5IP9C 1JOEA 3WODA 1R9TA 1SFOK 3BUEA 3S15C 1K83C 2WB1L 3S1NC 5IOTA 4XSXA 3IPJA 4KC6A 1IE0A 3AD8C 3S1MC 3L4KA 1TWCK 1TWGC 1O2AA 4BY1C 4LK1A 2E2JK 3AD7C 4C3IC 4X6AC 3LAJA 5E68A 3RZOK 1IBAA 2P8TA 1TWCA 4GTDA 5M3FK 2R93C 1PJ7A 5C4XK 3HKZD 1ZVUA 2NVXC 3TTGA 1VGXA 5CHPA 3H3VD 4A93C 1KQ4A 1Y1WK 4Q5SA 1XZPA 2YU9K 3N0BA 4A3DC 4A3JC 3M4OK 3PO3C 1IW7A 4MQ9A 1B4BA 1I6VA 3DXJA 1F7UA 4FM9A 2NVQK 1I6HK 3GTKK 1Y1WA 4FZBA 2GSOA 4QJVB 2YU9A 3RZDK 2A6HA 5C4JK 3S1RK 4NOIA 2Y0SL 2B63C 3GTKA 4P9SA 1EFWA 3CQZK 5IYDK 1TWHC 2BE5A 2JA5C 4C3HK 3N3YA 4Y52K 4KDDA 2R7ZC 1GE9A
chains in the Genus database with same CATH topology
1X31C 3GEHA 1WOOA 2GAGC 3AD7C 1XZQB 3TFHA 3A8KA 3GIRA 1WOSA 1VRQC 1WOPA 1PJ6A 1PJ7A 1WSVA 1XZQA 3GEIA 4P9SA 3TTGA 1XZPB 3A8IA 5L46A 1WORA 1VLOA 3GEEA 3A8JA 3AD9C 1WSRA 1PJ5A 1XZPA 3TFIA 3ADAC 3AD8C 1YX2A 4PABA 1V5VA 4PAAA 3TFJA 2GAHC 3GSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X31 C;  3GEH A;  1WOO A;  2GAG C;  3AD7 C;  1XZQ B;  3TFH A;  3A8K A;  3GIR A;  1WOS A;  1VRQ C;  1WOP A;  1PJ6 A;  1PJ7 A;  1WSV A;  1XZQ A;  3GEI A;  4P9S A;  3TTG A;  1XZP B;  3A8I A;  5L46 A;  1WOR A;  1VLO A;  3GEE A;  3A8J A;  3AD9 C;  1WSR A;  1PJ5 A;  1XZP A;  3TFI A;  3ADA C;  3AD8 C;  1YX2 A;  4PAB A;  1V5V A;  4PAA A;  3TFJ A;  2GAH C;  3GSI A; 
#chains in the Genus database with same CATH topology
 4A3I K;  3GTJ K;  4JK1 A;  4GTF A;  4YFK A;  1O25 A;  3HOW K;  1B4A A;  1SFO C;  2E2I A;  1HI9 A;  1Y1V K;  3GEI A;  2O5I A;  1XXB A;  1J98 A;  3GTL A;  1TWC C;  4BKW A;  4KAW X;  2Y3P A;  2A68 A;  1Y1V A;  3HOX K;  2E2J C;  5C44 K;  4KM8 A;  4YFN A;  4BLB A;  4C2M K;  3RZO C;  1XXC A;  5D4D A;  5C4X C;  2NVY K;  3GTP K;  2E2H K;  1F9N A;  1XPP A;  4KMD A;  1Y1W C;  4MEX A;  4YFX A;  4G7H A;  2JA8 K;  3A8I A;  2YU9 C;  2NVY A;  3AD9 C;  3M4O C;  3GTP A;  3VA7 A;  2E2H A;  2PMZ L;  1WCM K;  1YCL A;  2JA7 K;  2V6T A;  3FOF A;  2NVQ C;  3AH5 A;  1I6H C;  3GTK C;  1C0A A;  4C3J K;  3S17 K;  3RZD C;  5M5W K;  1ZXO A;  4A3E K;  5C4J C;  1WCM A;  3S1R C;  3I4N K;  4ZH4 A;  1R9T K;  2JA7 A;  2GSN A;  1WOS A;  1PJ6 A;  3H0G K;  4QJV A;  3CQZ C;  5HL8 A;  5IYD C;  4OIO A;  3ORE A;  4XLP A;  4P5A A;  1HQM A;  4LLG A;  1L0W A;  4C3H C;  2JA6 A;  4KN4 A;  4Y52 C;  2V6S A;  3H0G A;  1YNJ A;  3AQP A;  3JST A;  4KN7 A;  2CFA B;  3ADA C;  4A3I C;  3GTJ C;  4G0V A;  1EH1 A;  3I4M K;  3GTM A;  1V5V A;  1TWA K;  5M5Y K;  2XCQ A;  3LAP A;  3HOW C;  1Y1V C;  5IOR A;  5IYC K;  4AYB L;  3L4J A;  1TWA A;  2R92 A;  1WSV A;  3OPF A;  4A3L K;  5EGE A;  4Y7N K;  1DD5 A;  5IYB K;  3S16 K;  1G51 A;  2ZFZ A;  4J3N A;  4LJZ A;  3HOX C;  5C44 C;  3T01 A;  2D6F C;  4C2M C;  1ZBS A;  4GZY A;  2WB1 D;  3FHZ A;  2P5M A;  2NVY C;  4A3B K;  1DCP A;  3GTP C;  4XCH A;  3PO2 K;  2E2H C;  3GTQ A;  4P5B A;  5IOS A;  3G4A A;  2JA8 C;  4O2D A;  2PA8 L;  5JVO A;  1O27 A;  1WCM C;  2JA7 C;  5FJ8 K;  1EI6 A;  4KMU A;  2A69 A;  4C3J C;  3S17 C;  2A6E A;  3BP8 C;  4YG2 A;  4A3E C;  3TFJ A;  3I4N C;  1R9T C;  2GSU A;  4BY7 K;  2E2I K;  2GAG C;  3H0G C;  4LR2 A;  4QIW L;  5FLM K;  3GTL K;  2VUM K;  2W7V A;  3SZZ A;  2FQO A;  5L46 A;  4RMF A;  3GEE A;  2FQT A;  1WIH A;  3I4M C;  3BP3 A;  2RGR A;  1TWA C;  2VUM A;  4KMH A;  2XCO A;  4BLA A;  2GAH C;  3HOU K;  1WQF A;  5IYC C;  1WQG A;  2WAQ L;  3V4G A;  2CFA A;  3GEH A;  1ZYR A;  1TWF K;  3S2D K;  4A3L C;  3TFH A;  4Y7N C;  5IYB C;  3EQL A;  3S16 C;  3FKI K;  3K7A K;  1USM A;  1BDF A;  5IP7 K;  1USO A;  2NVT K;  2RH6 A;  1UV7 A;  1WOR A;  1TWF A;  4G7Z A;  1AB4 A;  3FKI A;  4ILD A;  4KAT A;  1O2F B;  4A3B C;  3SZY A;  3HOZ K;  3GTO K;  5M3M K;  3PO2 C;  1INN A;  4GT9 A;  1ISE A;  5TJ3 A;  2NVX A;  4MEY A;  1X31 C;  1J6V A;  4A3C K;  5CJ9 A;  4KAR A;  4G0W A;  2JA6 K;  3GTO A;  1IS1 A;  4XLN A;  3GTG K;  1IQ0 A;  1I3Q K;  3NUH A;  3QX3 A;  3GTM K;  1JQW A;  3GTG A;  1WSR A;  1I3Q A;  4BY7 C;  3S0X A;  1RU0 A;  2E2I C;  1WQH A;  4OIN A;  2R92 K;  2PMZ D;  2O5J A;  4LQY A;  1O29 A;  5FLM C;  3GTL C;  1IL2 A;  3HKZ L;  2VUM C;  3S1Q K;  4KAS A;  1EK8 A;  4A3M K;  4A3K K;  2V6U A;  3H3V L;  3S2H K;  4XSZ A;  2R7Z A;  1ZQ1 C;  4A3F K;  5C3E K;  4BBR K;  5M5X K;  3N0C A;  1PJ5 A;  3HOU C;  3GTQ K;  4GTL A;  4GTC A;  3GDZ A;  4PAB A;  1SFO A;  1TWF C;  1DCO A;  3S2D C;  1BS2 A;  2ZUE A;  4KB2 A;  1WOO A;  1BJT A;  4A3G K;  2XCR B;  3FKI C;  3K7A C;  3M3Y K;  4Q4Z A;  4GTA A;  1VRQ C;  5IP7 C;  5TMC A;  2NVT C;  3HOY K;  4AYB D;  3HXA A;  3HOZ C;  3GTO C;  4BBS K;  1O2B A;  4BXX K;  4GTB A;  4DDQ A;  1YX2 A;  4AH6 A;  4A3C C;  1I50 K;  4OIR A;  4GFQ A;  2JA6 C;  1VJE A;  3GTG C;  1O28 A;  1XZQ B;  1I3Q C;  3A8K A;  1F93 A;  3GTM C;  1I50 A;  4LK0 A;  2PPB A;  3S14 K;  3HOV K;  1O26 A;  3T00 A;  5IP9 K;  2PA8 D;  2Y0S D;  3AQO A;  1F7V A;  2R92 C;  4G0U A;  3S15 K;  1K83 K;  3S1N K;  3S1Q C;  3CQZ A;  2ZUF A;  2CW0 A;  5IOQ A;  4A3M C;  3S1M K;  4A3K C;  1J6W A;  3S2H C;  1TWG K;  4BY1 K;  3FOE A;  2KWA A;  1K83 A;  4WJ3 M;  1WOP A;  4KM9 A;  4LOW A;  4A3F C;  4C3I K;  5C3E C;  4X6A K;  3GTJ A;  4BBR C;  1XXA A;  4QIW D;  2R93 K;  1XZP B;  1TWG A;  1VLO A;  4WIL A;  3GTQ C;  2NVX K;  1BGW A;  3OEP A;  4A93 K;  3G4C A;  2R93 A;  4A3G C;  3GSI A;  4G7O A;  4A3D K;  3M3Y C;  4A3J K;  3PO3 K;  1J6X A;  3ERE D;  2EBB A;  4OIQ A;  3HOY C;  4KB4 A;  4WJ4 A;  2WAQ D;  2PHC B;  5JFE A;  4BBS C;  1DCH A;  2JH3 A;  4KMA A;  4OIP A;  2B63 K;  4BXX C;  3A8J A;  1EQR A;  3Q3Q A;  3MML B;  1I50 C;  1O24 A;  3TFI A;  4C45 A;  3LPX A;  1TWH K;  4PAA A;  2JA5 K;  2B63 A;  1YNN A;  3CAG A;  5TMF A;  2R7Z K;  1VH2 A;  4GTE A;  3T02 A;  3S14 C;  3HOV C;  1SMY A;  3GIR A;  4M1X A;  1TWH A;  5EGH A;  1JVI A;  2JA5 A;  1XZQ A;  5IP9 C;  1JOE A;  3WOD A;  1R9T A;  1SFO K;  3BUE A;  3S15 C;  1K83 C;  2WB1 L;  3S1N C;  5IOT A;  4XSX A;  3IPJ A;  4KC6 A;  1IE0 A;  3AD8 C;  3S1M C;  3L4K A;  1TWC K;  1TWG C;  1O2A A;  4BY1 C;  4LK1 A;  2E2J K;  3AD7 C;  4C3I C;  4X6A C;  3LAJ A;  5E68 A;  3RZO K;  1IBA A;  2P8T A;  1TWC A;  4GTD A;  5M3F K;  2R93 C;  1PJ7 A;  5C4X K;  3HKZ D;  1ZVU A;  2NVX C;  3TTG A;  1VGX A;  5CHP A;  3H3V D;  4A93 C;  1KQ4 A;  1Y1W K;  4Q5S A;  1XZP A;  2YU9 K;  3N0B A;  4A3D C;  4A3J C;  3M4O K;  3PO3 C;  1IW7 A;  4MQ9 A;  1B4B A;  1I6V A;  3DXJ A;  1F7U A;  4FM9 A;  2NVQ K;  1I6H K;  3GTK K;  1Y1W A;  4FZB A;  2GSO A;  4QJV B;  2YU9 A;  3RZD K;  2A6H A;  5C4J K;  3S1R K;  4NOI A;  2Y0S L;  2B63 C;  3GTK A;  4P9S A;  1EFW A;  3CQZ K;  5IYD K;  1TWH C;  2BE5 A;  2JA5 C;  4C3H K;  3N3Y A;  4Y52 K;  4KDD A;  2R7Z C;  1GE9 A; 
#chains in the Genus database with same CATH homology
 1X31 C;  3GEH A;  1WOO A;  2GAG C;  3AD7 C;  1XZQ B;  3TFH A;  3A8K A;  3GIR A;  1WOS A;  1VRQ C;  1WOP A;  1PJ6 A;  1PJ7 A;  1WSV A;  1XZQ A;  3GEI A;  4P9S A;  3TTG A;  1XZP B;  3A8I A;  5L46 A;  1WOR A;  1VLO A;  3GEE A;  3A8J A;  3AD9 C;  1WSR A;  1PJ5 A;  1XZP A;  3TFI A;  3ADA C;  3AD8 C;  1YX2 A;  4PAB A;  1V5V A;  4PAA A;  3TFJ A;  2GAH C;  3GSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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