2FQOA

Crystal structure of b. subtilis luxs in complex with (2s)-2-amino-4-[(2r,3r)-2,3-dihydroxy-3-n- hydroxycarbamoyl-propylmercapto]butyric acid
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
154
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords S-ribosylhomocysteine lyase
publication title Design and Synthesis of Substrate and Intermediate Analogue Inhibitors of S-Ribosylhomocysteinase
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 45
structure length 154
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 2fqoA00
1J98A 1JOEA 1VJEA 1IE0A 5E68A 1INNA 1J6WA 1JQWA 1VGXA 2FQTA 1J6VA 1JVIA 1YCLA 1VH2A 4XCHA 1J6XA 2FQOA
chains in the Genus database with same CATH superfamily
3G4CA 1YX2A 3GTPK 5C44C 2W7VA 3PO3K 3FKIK 4QJVA 2XCRB 5IOTA 3S1NC 1Y1WA 3BP3A 3S2HK 1J6WA 3GTKK 3GTMA 5IYDK 1WCMK 1K83C 5IYCC 4A93K 3S1MC 3GTJA 5C4XC 4BXXC 1XXAA 4LLGA 1EH1A 2CFAA 1WIHA 5TMCA 1R9TA 1J6XA 1Y1VC 2NVXK 4KDDA 2E2HA 1VH2A 3S2DC 1TWFA 1SFOC 3GIRA 3ADAC 3MMLB 4G7OA 1I50K 3GTOC 4GTCA 3M4OC 4X6AK 3AQOA 1VJEA 1ZYRA 3CQZK 2KWAA 1DCHA 2WB1D 3N0BA 4OIQA 2VUMK 3N0CA 5CJ9A 5IOSA 1WOSA 1F93A 3GTQC 2RGRA 2E2IK 2YU9K 4WJ3M 4ILDA 4KMHA 2A69A 3VA7A 4C3HC 1EI6A 3FOFA 3RZOC 4YFKA 2NVQC 2JA6C 5IORA 5TJ3A 1B4AA 1Y1WK 3HOUK 3GTMK 1WORA 3S1QC 4MQ9A 2E2JK 2O5JA 2NVYA 4KATA 1IQ0A 4P5BA 4BLBA 3GTJK 3BP8C 3RZDK 3G4AA 5EGHA 4A3MC 4KN7A 4ZH4A 4BBRK 1WQGA 5C3EK 2NVTK 2R92A 2JA7C 3AQPA 5C4JC 3S16C 4Y52C 2P8TA 3S1RK 3GEHA 4FZBA 1R9TK 3H3VL 3GTGA 4G7ZA 3TFHA 2GSNA 4GTBA 2E2HK 1B4BA 3NUHA 2V6UA 2R7ZK 3TTGA 1O29A 4Y7NK 1DCPA 4C45A 4J3NA 1USOA 4G0UA 3I4NK 3OREA 2B63A 4AYBD 5IOQA 3PO3C 4A3JK 3LPXA 1PJ6A 3AD7C 3HOVK 5IYDC 4JK1A 1F9NA 3SZYA 1IL2A 4RMFA 1WQFA 2GAGC 1KQ4A 2WAQD 3HOXK 4GTEA 3LAPA 2FQTA 4C2MK 4A3GK 1V5VA 5IYBK 2NVXC 5D4DA 1J6VA 4KMUA 3HKZD 1Y1VA 2A6HA 3HOZK 5FLMK 1IS1A 4XLNA 4OIPA 4A3LC 1VLOA 1DCOA 1I50C 1SFOA 2NVYK 4PABA 5L46A 3T00A 2JA8K 1XPPA 1O27A 3S14K 1UV7A 4YG2A 4C3JK 5IP9C 3OEPA 1IW7A 3HOWK 3GTOA 4OINA 3JSTA 1TWAC 2JA5A 3S0XA 4A3BK 2R92K 5JVOA 1I6HK 3HOYK 2JH3A 3GTLA 2E2IC 1ZVUA 4BY1C 3HXAA 1HI9A 3GTGK 1O24A 3PO2K 1WQHA 3GTQA 1WSRA 3L4JA 3S17K 3TFJA 4Q5SA 1VRQC 1C0AA 1XZPA 5M3MK 1TWGC 3I4MK 2PMZD 4P5AA 4LK0A 5IP7K 4A3KK 3HOUC 2R93A 3AD9C 5C44K 1EQRA 3S1NK 3GEEA 3RZDC 4PAAA 2Y0SL 2V6SA 1X31C 1G51A 1ZXOA 1XZQB 5M5XK 2RH6A 1XXCA 4GT9A 3S1RC 3CAGA 2PA8D 3GDZA 2XCQA 1GE9A 1WOOA 2JA7A 4A3DK 1IBAA 4KMDA 1YNJA 3A8IA 1Y1VK 3L4KA 3K7AK 2R7ZC 3H0GA 4KASA 4C3IC 4A3FC 1SFOK 3S15K 1EK8A 1HQMA 2GAHC 1TWHA 1I3QA 2GSUA 1BDFA 2A68A 3M4OK 2JA5K 3FHZA 1JVIA 5CHPA 1TWCC 1O2FB 3AH5A 3HOXC 4G0VA 3GTLK 1USMA 1TWFK 4BKWA 1O28A 3BUEA 4KC6A 3GTQK 2O5IA 3GTPC 3FKIC 2ZFZA 3Q3QA 4XSZA 2CFAB 3HOZC 2NVXA 4MEYA 3S2HC 3GTKC 4A3IK 1WCMC 3RZOK 2WB1L 4A93C 2NVQK 2R93K 4WJ4A 4LQYA 2JA8C 1K83A 1ISEA 1J98A 1BS2A 3S1QK 4G0WA 2D6FC 4KN4A 3HOWC 1XZQA 2PPBA 5EGEA 2R92C 1I6HC 5M5WK 1TWAA 3GTGC 2JA7K 3PO2C 5C4JK 5HL8A 4Y52K 4KM9A 4BBSK 3H0GK 1YCLA 3I4MC 1RU0A 2A6EA 4X6AC 1TWGA 3CQZC 2Y3PA 1TWHK 1I3QK 4LK1A 1BGWA 4GTDA 2VUMC 3GEIA 2BE5A 1L0WA 4GZYA 3OPFA 3M3YK 2YU9C 1IE0A 4GTAA 4KAWX 3A8KA 1AB4A 1SMYA 3IPJA 3AD8C 4WILA 3LAJA 4GTLA 2PHCB 4BY7K 4AYBL 4A3EK 4XCHA 4GTFA 2P5MA 2B63K 4A3CK 4A3DC 4LJZA 4P9SA 3K7AC 1Y1WC 3GTMC 2JA6A 2E2JC 3DXJA 3H3VD 5JFEA 1ZBSA 4AH6A 2WAQL 4M1XA 2ZUEA 1I6VA 3GTJC 5M3FK 2R7ZA 3S15C 1JQWA 1K83K 5IYCK 3S1MK 4BBRC 4A3LK 5C3EC 1O2AA 2NVTC 5C4XK 1XXBA 4BXXK 3N3YA 2JA5C 1R9TC 1F7VA 1O2BA 5IP9K 3GTLC 3HKZL 4Q4ZA 1VGXA 1TWAK 2E2HC 1TWFC 3WODA 1TWCA 4KMAA 3V4GA 2V6TA 1ZQ1C 4KB4A 4KARA 4Y7NC 3FOEA 4BY1K 3I4NC 3S2DK 4OIOA 5FJ8K 4A3JC 4XLPA 3GTPA 3GSIA 3HOVC 4QIWD 4A3IC 3FKIA 1TWGK 2GSOA 3GTOK 4KB2A 2R93C 3ERED 4QJVB 3GTKA 1WCMA 4YFXA 4LR2A 2XCOA 1F7UA 3T02A 4C2MC 3EQLA 1INNA 4A3GC 4YFNA 4G7HA 4BLAA 5IYBC 1WSVA 2PMZL 1DD5A 3TFIA 2ZUFA 4C3HK 5FLMC 4O2DA 4BBSC 1EFWA 2EBBA 2CW0A 3H0GC 2JA6K 2NVYC 5E68A 4FM9A 3S14C 1YNNA 1I50A 4C3JC 4OIRA 1I3QC 1TWHC 4C3IK 1JOEA 4NOIA 4A3FK 4A3BC 4GFQA 1XZPB 3HOYC 3QX3A 5TMFA 1O26A 2PA8L 3CQZA 4A3MK 3M3YC 4KM8A 1O25A 3T01A 2VUMA 3S16K 3A8JA 3SZZA 2FQOA 4LOWA 4MEXA 2YU9A 2E2IA 4XSXA 3S17C 1TWCK 1PJ7A 4DDQA 5M5YK 4BY7C 2Y0SD 1WOPA 4A3EC 2B63C 4A3CC 1BJTA 1PJ5A 5IP7C 4A3KC 4QIWL
chains in the Genus database with same CATH topology
1J98A 1JOEA 1VJEA 1IE0A 5E68A 1INNA 1J6WA 1JQWA 1VGXA 2FQTA 1J6VA 1JVIA 1YCLA 1VH2A 4XCHA 1J6XA 2FQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J98 A;  1JOE A;  1VJE A;  1IE0 A;  5E68 A;  1INN A;  1J6W A;  1JQW A;  1VGX A;  2FQT A;  1J6V A;  1JVI A;  1YCL A;  1VH2 A;  4XCH A;  1J6X A;  2FQO A; 
#chains in the Genus database with same CATH topology
 3G4C A;  1YX2 A;  3GTP K;  5C44 C;  2W7V A;  3PO3 K;  3FKI K;  4QJV A;  2XCR B;  5IOT A;  3S1N C;  1Y1W A;  3BP3 A;  3S2H K;  1J6W A;  3GTK K;  3GTM A;  5IYD K;  1WCM K;  1K83 C;  5IYC C;  4A93 K;  3S1M C;  3GTJ A;  5C4X C;  4BXX C;  1XXA A;  4LLG A;  1EH1 A;  2CFA A;  1WIH A;  5TMC A;  1R9T A;  1J6X A;  1Y1V C;  2NVX K;  4KDD A;  2E2H A;  1VH2 A;  3S2D C;  1TWF A;  1SFO C;  3GIR A;  3ADA C;  3MML B;  4G7O A;  1I50 K;  3GTO C;  4GTC A;  3M4O C;  4X6A K;  3AQO A;  1VJE A;  1ZYR A;  3CQZ K;  2KWA A;  1DCH A;  2WB1 D;  3N0B A;  4OIQ A;  2VUM K;  3N0C A;  5CJ9 A;  5IOS A;  1WOS A;  1F93 A;  3GTQ C;  2RGR A;  2E2I K;  2YU9 K;  4WJ3 M;  4ILD A;  4KMH A;  2A69 A;  3VA7 A;  4C3H C;  1EI6 A;  3FOF A;  3RZO C;  4YFK A;  2NVQ C;  2JA6 C;  5IOR A;  5TJ3 A;  1B4A A;  1Y1W K;  3HOU K;  3GTM K;  1WOR A;  3S1Q C;  4MQ9 A;  2E2J K;  2O5J A;  2NVY A;  4KAT A;  1IQ0 A;  4P5B A;  4BLB A;  3GTJ K;  3BP8 C;  3RZD K;  3G4A A;  5EGH A;  4A3M C;  4KN7 A;  4ZH4 A;  4BBR K;  1WQG A;  5C3E K;  2NVT K;  2R92 A;  2JA7 C;  3AQP A;  5C4J C;  3S16 C;  4Y52 C;  2P8T A;  3S1R K;  3GEH A;  4FZB A;  1R9T K;  3H3V L;  3GTG A;  4G7Z A;  3TFH A;  2GSN A;  4GTB A;  2E2H K;  1B4B A;  3NUH A;  2V6U A;  2R7Z K;  3TTG A;  1O29 A;  4Y7N K;  1DCP A;  4C45 A;  4J3N A;  1USO A;  4G0U A;  3I4N K;  3ORE A;  2B63 A;  4AYB D;  5IOQ A;  3PO3 C;  4A3J K;  3LPX A;  1PJ6 A;  3AD7 C;  3HOV K;  5IYD C;  4JK1 A;  1F9N A;  3SZY A;  1IL2 A;  4RMF A;  1WQF A;  2GAG C;  1KQ4 A;  2WAQ D;  3HOX K;  4GTE A;  3LAP A;  2FQT A;  4C2M K;  4A3G K;  1V5V A;  5IYB K;  2NVX C;  5D4D A;  1J6V A;  4KMU A;  3HKZ D;  1Y1V A;  2A6H A;  3HOZ K;  5FLM K;  1IS1 A;  4XLN A;  4OIP A;  4A3L C;  1VLO A;  1DCO A;  1I50 C;  1SFO A;  2NVY K;  4PAB A;  5L46 A;  3T00 A;  2JA8 K;  1XPP A;  1O27 A;  3S14 K;  1UV7 A;  4YG2 A;  4C3J K;  5IP9 C;  3OEP A;  1IW7 A;  3HOW K;  3GTO A;  4OIN A;  3JST A;  1TWA C;  2JA5 A;  3S0X A;  4A3B K;  2R92 K;  5JVO A;  1I6H K;  3HOY K;  2JH3 A;  3GTL A;  2E2I C;  1ZVU A;  4BY1 C;  3HXA A;  1HI9 A;  3GTG K;  1O24 A;  3PO2 K;  1WQH A;  3GTQ A;  1WSR A;  3L4J A;  3S17 K;  3TFJ A;  4Q5S A;  1VRQ C;  1C0A A;  1XZP A;  5M3M K;  1TWG C;  3I4M K;  2PMZ D;  4P5A A;  4LK0 A;  5IP7 K;  4A3K K;  3HOU C;  2R93 A;  3AD9 C;  5C44 K;  1EQR A;  3S1N K;  3GEE A;  3RZD C;  4PAA A;  2Y0S L;  2V6S A;  1X31 C;  1G51 A;  1ZXO A;  1XZQ B;  5M5X K;  2RH6 A;  1XXC A;  4GT9 A;  3S1R C;  3CAG A;  2PA8 D;  3GDZ A;  2XCQ A;  1GE9 A;  1WOO A;  2JA7 A;  4A3D K;  1IBA A;  4KMD A;  1YNJ A;  3A8I A;  1Y1V K;  3L4K A;  3K7A K;  2R7Z C;  3H0G A;  4KAS A;  4C3I C;  4A3F C;  1SFO K;  3S15 K;  1EK8 A;  1HQM A;  2GAH C;  1TWH A;  1I3Q A;  2GSU A;  1BDF A;  2A68 A;  3M4O K;  2JA5 K;  3FHZ A;  1JVI A;  5CHP A;  1TWC C;  1O2F B;  3AH5 A;  3HOX C;  4G0V A;  3GTL K;  1USM A;  1TWF K;  4BKW A;  1O28 A;  3BUE A;  4KC6 A;  3GTQ K;  2O5I A;  3GTP C;  3FKI C;  2ZFZ A;  3Q3Q A;  4XSZ A;  2CFA B;  3HOZ C;  2NVX A;  4MEY A;  3S2H C;  3GTK C;  4A3I K;  1WCM C;  3RZO K;  2WB1 L;  4A93 C;  2NVQ K;  2R93 K;  4WJ4 A;  4LQY A;  2JA8 C;  1K83 A;  1ISE A;  1J98 A;  1BS2 A;  3S1Q K;  4G0W A;  2D6F C;  4KN4 A;  3HOW C;  1XZQ A;  2PPB A;  5EGE A;  2R92 C;  1I6H C;  5M5W K;  1TWA A;  3GTG C;  2JA7 K;  3PO2 C;  5C4J K;  5HL8 A;  4Y52 K;  4KM9 A;  4BBS K;  3H0G K;  1YCL A;  3I4M C;  1RU0 A;  2A6E A;  4X6A C;  1TWG A;  3CQZ C;  2Y3P A;  1TWH K;  1I3Q K;  4LK1 A;  1BGW A;  4GTD A;  2VUM C;  3GEI A;  2BE5 A;  1L0W A;  4GZY A;  3OPF A;  3M3Y K;  2YU9 C;  1IE0 A;  4GTA A;  4KAW X;  3A8K A;  1AB4 A;  1SMY A;  3IPJ A;  3AD8 C;  4WIL A;  3LAJ A;  4GTL A;  2PHC B;  4BY7 K;  4AYB L;  4A3E K;  4XCH A;  4GTF A;  2P5M A;  2B63 K;  4A3C K;  4A3D C;  4LJZ A;  4P9S A;  3K7A C;  1Y1W C;  3GTM C;  2JA6 A;  2E2J C;  3DXJ A;  3H3V D;  5JFE A;  1ZBS A;  4AH6 A;  2WAQ L;  4M1X A;  2ZUE A;  1I6V A;  3GTJ C;  5M3F K;  2R7Z A;  3S15 C;  1JQW A;  1K83 K;  5IYC K;  3S1M K;  4BBR C;  4A3L K;  5C3E C;  1O2A A;  2NVT C;  5C4X K;  1XXB A;  4BXX K;  3N3Y A;  2JA5 C;  1R9T C;  1F7V A;  1O2B A;  5IP9 K;  3GTL C;  3HKZ L;  4Q4Z A;  1VGX A;  1TWA K;  2E2H C;  1TWF C;  3WOD A;  1TWC A;  4KMA A;  3V4G A;  2V6T A;  1ZQ1 C;  4KB4 A;  4KAR A;  4Y7N C;  3FOE A;  4BY1 K;  3I4N C;  3S2D K;  4OIO A;  5FJ8 K;  4A3J C;  4XLP A;  3GTP A;  3GSI A;  3HOV C;  4QIW D;  4A3I C;  3FKI A;  1TWG K;  2GSO A;  3GTO K;  4KB2 A;  2R93 C;  3ERE D;  4QJV B;  3GTK A;  1WCM A;  4YFX A;  4LR2 A;  2XCO A;  1F7U A;  3T02 A;  4C2M C;  3EQL A;  1INN A;  4A3G C;  4YFN A;  4G7H A;  4BLA A;  5IYB C;  1WSV A;  2PMZ L;  1DD5 A;  3TFI A;  2ZUF A;  4C3H K;  5FLM C;  4O2D A;  4BBS C;  1EFW A;  2EBB A;  2CW0 A;  3H0G C;  2JA6 K;  2NVY C;  5E68 A;  4FM9 A;  3S14 C;  1YNN A;  1I50 A;  4C3J C;  4OIR A;  1I3Q C;  1TWH C;  4C3I K;  1JOE A;  4NOI A;  4A3F K;  4A3B C;  4GFQ A;  1XZP B;  3HOY C;  3QX3 A;  5TMF A;  1O26 A;  2PA8 L;  3CQZ A;  4A3M K;  3M3Y C;  4KM8 A;  1O25 A;  3T01 A;  2VUM A;  3S16 K;  3A8J A;  3SZZ A;  2FQO A;  4LOW A;  4MEX A;  2YU9 A;  2E2I A;  4XSX A;  3S17 C;  1TWC K;  1PJ7 A;  4DDQ A;  5M5Y K;  4BY7 C;  2Y0S D;  1WOP A;  4A3E C;  2B63 C;  4A3C C;  1BJT A;  1PJ5 A;  5IP7 C;  4A3K C;  4QIW L; 
#chains in the Genus database with same CATH homology
 1J98 A;  1JOE A;  1VJE A;  1IE0 A;  5E68 A;  1INN A;  1J6W A;  1JQW A;  1VGX A;  2FQT A;  1J6V A;  1JVI A;  1YCL A;  1VH2 A;  4XCH A;  1J6X A;  2FQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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