2FQOA

Crystal structure of b. subtilis luxs in complex with (2s)-2-amino-4-[(2r,3r)-2,3-dihydroxy-3-n- hydroxycarbamoyl-propylmercapto]butyric acid
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
154
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
source organism Bacillus subtilis
publication title Design and Synthesis of Substrate and Intermediate Analogue Inhibitors of S-Ribosylhomocysteinase
pubmed doi rcsb
molecule keywords S-ribosylhomocysteine lyase
total genus 45
structure length 154
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 2fqoA00
1IE0A 1JVIA 1VH2A 1YCLA 1J6VA 1JQWA 1J98A 1J6XA 1INNA 5E68A 1J6WA 1JOEA 1VJEA 1VGXA 4XCHA 2FQOA 2FQTA
chains in the Genus database with same CATH superfamily
1WCMA 1HQMA 1O2FB 4KN7A 5JFEA 2NVYC 1L0WA 1BDFA 3GEHA 5IYCC 4ZH4A 4KM8A 4C3HC 3FOFA 1TWCK 1R9TA 4GT9A 4BY1C 1XPPA 3ADAC 3G4CA 1DD5A 1I3QK 4A3DK 3A8JA 3I4NK 2YU9A 4LK0A 4MQ9A 4YFNA 4BBRC 4G7OA 1EK8A 4GTDA 1ZVUA 2NVYA 1UV7A 4A3MK 3S14K 3QX3A 1WIHA 3RZOK 2FQOA 2PMZL 4KMUA 3PO2K 2JH3A 2CW0A 5M5YK 1GE9A 4YFKA 1TWCC 3DXJA 2O5IA 1EQRA 3GEEA 2A68A 1EH1A 1I3QC 4A3DC 3I4NC 4QJVB 3GTKK 4GTLA 1YNNA 3I4MK 3S16K 1DCPA 1TWGA 2P5MA 1KQ4A 4WILA 4A3MC 1O2AA 3S14C 1F93A 3RZOC 2GSUA 4XSXA 4A3JK 3H3VD 4A3BK 2NVXK 2V6TA 4A3LK 3HKZL 1I3QA 4XSZA 3L4JA 3TFHA 5IOQA 3GTKC 4DDQA 1RU0A 3I4MC 3S16C 1WQGA 1G51A 4Q5SA 4KM9A 2JA5K 4A3JC 5E68A 2CFAA 5IOTA 4A3BC 2NVXC 2FQTA 4A3LC 1YX2A 3GTKA 1IW7A 3FKIK 1YNJA 3OREA 1TWFK 1XZPB 4KMHA 4X6AK 2PA8D 4GFQA 1XZQB 2NVXA 3CQZK 1B4BA 1VH2A 2GSNA 3T02A 3L4KA 4PAAA 2Y0SL 3OEPA 5HL8A 3GTGK 1J6VA 4G0WA 3FKIC 3HOWK 5IYDC 1XZQA 4Y52K 2GAHC 1TWFC 1ZXOA 4PABA 1ISEA 3AD7C 3ERED 3A8IA 3AD9C 1WSRA 2E2HK 2R93K 4X6AC 2PHCB 3S2DK 1PJ6A 4BLBA 3CQZC 2RGRA 1DCOA 2EBBA 2KWAA 3FKIA 4BY7K 3GTGC 1VGXA 3HOWC 3GSIA 1TWFA 2JA6A 2JA8K 4Y52C 1IQ0A 5C4XK 1TWGK 3BP8C 1Y1WC 1WSVA 1VJEA 3HOXK 1VRQC 2E2HC 2R93C 3LAJA 3HKZD 3GTMA 3S2DC 3CQZA 1J6WA 5JVOA 3GTPA 1JOEA 3N0BA 4BBSK 4RMFA 3GTGA 2WB1L 4XLNA 4ILDA 4BY7C 4BKWA 2NVQK 3AH5A 4P9SA 1HI9A 1Y1WA 4C45A 1WQFA 2JA8C 5C4XC 1TWGC 1ZBSA 2E2HA 3HOXC 2R93A 5C3EK 4GTBA 3A8KA 4BBSC 4C3IK 4G0VA 3S0XA 4KASA 2E2JK 3Q3QA 4KC6A 2NVQC 4OIQA 3S1RK 2V6SA 4A3KK 4P5BA 2WAQL 3FOEA 4XCHA 1O28A 5C3EC 4A3EK 4KB4A 4QJVA 1O27A 5FJ8K 1SMYA 4GTEA 4C3IC 4GTAA 2R7ZK 2E2JC 1BS2A 5C44K 4A3FK 3SZYA 1SFOK 4OIRA 4Y7NK 1ZYRA 3S1RC 1INNA 1DCHA 4A3KC 1XXAA 2BE5A 4YG2A 1TWHK 4OIPA 4KMAA 3OPFA 2PPBA 3GTLK 4A3EC 1WQHA 1IE0A 1I6HK 3AQPA 2V6UA 1K83K 2R7ZC 5CJ9A 4A3GK 3N0CA 5IP9C 2GSOA 5C44C 4A3FC 1PJ7A 5IYDK 4AYBL 1SFOC 2ZUEA 4Y7NC 4BXXK 1AB4A 2JA6K 4C3JK 1TWHC 2JA7K 3H0GA 3AQOA 1I6VA 3GTLC 2A69A 3GTMK 3GTPK 1I6HC 4OINA 2R7ZA 1Y1VK 3S1MK 1K83C 3GTOK 4A3GC 1SFOA 1XZPA 2PMZD 5C4JC 3HOZK 2D6FC 1XXBA 1IBAA 4BLAA 3MMLB 2W7VA 1TWHA 1Y1WK 4BXXC 4KATA 2JA6C 4C3JC 2JA7C 3GTLA 1O2BA 5TMCA 1C0AA 4LR2A 3GTMC 5TMFA 3GTPC 1K83A 2XCOA 1Y1VC 4LQYA 3S1MC 3M4OK 3GTOC 3BUEA 1VLOA 3HOZC 3K7AK 3S2HK 3S1NK 3RZDK 1V5VA 2JA7A 4GTFA 4LJZA 3GTJA 4KN4A 3S15K 2R92A 1WORA 1JVIA 1Y1VA 3HOUK 1O29A 4XLPA 2XCRB 1ZQ1C 3SZZA 3JSTA 3EQLA 4A3IK 1F9NA 3GTOA 3V4GA 1O26A 1USMA 3LAPA 3M4OC 5IP7C 3HOVK 4WJ3M 3K7AC 3S2HC 3S1NC 3RZDC 2B63C 2E2IK 2O5JA 3S15C 1EFWA 1PJ5A 3M3YK 3LPXA 4G7HA 1XXCA 1F7VA 2PA8L 2RH6A 4M1XA 4J3NA 3HOUC 2ZUFA 4QIWL 4AYBD 4LK1A 4A3IC 3GDZA 3HXAA 3GEIA 3GIRA 4FZBA 3GTQK 3HOVC 3WODA 2B63A 5IYBK 4C2MK 1EI6A 2E2IC 1BJTA 1WOPA 5M3FK 1USOA 3H0GK 2Y0SD 4KMDA 4Q4ZA 4P5AA 2VUMK 3M3YC 4AH6A 3T00A 3NUHA 2XCQA 3CAGA 5IP9K 4KAWX 3VA7A 3T01A 3GTQC 1J6XA 3N3YA 1BGWA 3HOYK 5IYBC 4C2MC 2E2IA 2A6EA 4WJ4A 1O25A 3TFIA 3PO2C 3TTGA 4GZYA 3H0GC 1TWCA 4MEXA 2VUMC 5EGHA 3S1QK 1B4AA 3S17K 5IORA 5CHPA 4OIOA 3FHZA 4JK1A 3PO3K 3GTQA 1I50K 2CFAB 4A93K 5C4JK 4KDDA 4MEYA 5TJ3A 4KB2A 3HOYC 1F7UA 2VUMA 3GTJK 5EGEA 1WOSA 2WB1D 2R92K 3S1QC 2P8TA 3S17C 5M5WK 2ZFZA 1IS1A 3PO3C 1I50C 4A93C 4A3CK 3IPJA 5L46A 5D4DA 1TWAK 1WCMK 4KARA 4YFXA 1YCLA 2JA5C 4O2DA 4QIWD 3GTJC 4FM9A 5M3MK 1O24A 2R92C 3AD8C 1R9TK 1JQWA 2NVTK 3H3VL 1I50A 5IOSA 5IP7K 2WAQD 5FLMK 5M5XK 1J98A 2YU9K 4A3CC 2A6HA 1WOOA 1TWAC 1X31C 2NVYK 1WCMC 2B63K 2GAGC 2JA5A 4G0UA 4GTCA 5IYCK 4C3HK 3TFJA 4LLGA 3BP3A 4LOWA 2Y3PA 1IL2A 4BY1K 1R9TC 2NVTC 3G4AA 4BBRK 5FLMC 4G7ZA 2YU9C 1TWAA 4NOIA
chains in the Genus database with same CATH topology
1IE0A 1JVIA 1VH2A 1YCLA 1J6VA 1JQWA 1J98A 1J6XA 1INNA 5E68A 1J6WA 1JOEA 1VJEA 1VGXA 4XCHA 2FQOA 2FQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IE0 A;  1JVI A;  1VH2 A;  1YCL A;  1J6V A;  1JQW A;  1J98 A;  1J6X A;  1INN A;  5E68 A;  1J6W A;  1JOE A;  1VJE A;  1VGX A;  4XCH A;  2FQO A;  2FQT A; 
#chains in the Genus database with same CATH topology
 1WCM A;  1HQM A;  1O2F B;  4KN7 A;  5JFE A;  2NVY C;  1L0W A;  1BDF A;  3GEH A;  5IYC C;  4ZH4 A;  4KM8 A;  4C3H C;  3FOF A;  1TWC K;  1R9T A;  4GT9 A;  4BY1 C;  1XPP A;  3ADA C;  3G4C A;  1DD5 A;  1I3Q K;  4A3D K;  3A8J A;  3I4N K;  2YU9 A;  4LK0 A;  4MQ9 A;  4YFN A;  4BBR C;  4G7O A;  1EK8 A;  4GTD A;  1ZVU A;  2NVY A;  1UV7 A;  4A3M K;  3S14 K;  3QX3 A;  1WIH A;  3RZO K;  2FQO A;  2PMZ L;  4KMU A;  3PO2 K;  2JH3 A;  2CW0 A;  5M5Y K;  1GE9 A;  4YFK A;  1TWC C;  3DXJ A;  2O5I A;  1EQR A;  3GEE A;  2A68 A;  1EH1 A;  1I3Q C;  4A3D C;  3I4N C;  4QJV B;  3GTK K;  4GTL A;  1YNN A;  3I4M K;  3S16 K;  1DCP A;  1TWG A;  2P5M A;  1KQ4 A;  4WIL A;  4A3M C;  1O2A A;  3S14 C;  1F93 A;  3RZO C;  2GSU A;  4XSX A;  4A3J K;  3H3V D;  4A3B K;  2NVX K;  2V6T A;  4A3L K;  3HKZ L;  1I3Q A;  4XSZ A;  3L4J A;  3TFH A;  5IOQ A;  3GTK C;  4DDQ A;  1RU0 A;  3I4M C;  3S16 C;  1WQG A;  1G51 A;  4Q5S A;  4KM9 A;  2JA5 K;  4A3J C;  5E68 A;  2CFA A;  5IOT A;  4A3B C;  2NVX C;  2FQT A;  4A3L C;  1YX2 A;  3GTK A;  1IW7 A;  3FKI K;  1YNJ A;  3ORE A;  1TWF K;  1XZP B;  4KMH A;  4X6A K;  2PA8 D;  4GFQ A;  1XZQ B;  2NVX A;  3CQZ K;  1B4B A;  1VH2 A;  2GSN A;  3T02 A;  3L4K A;  4PAA A;  2Y0S L;  3OEP A;  5HL8 A;  3GTG K;  1J6V A;  4G0W A;  3FKI C;  3HOW K;  5IYD C;  1XZQ A;  4Y52 K;  2GAH C;  1TWF C;  1ZXO A;  4PAB A;  1ISE A;  3AD7 C;  3ERE D;  3A8I A;  3AD9 C;  1WSR A;  2E2H K;  2R93 K;  4X6A C;  2PHC B;  3S2D K;  1PJ6 A;  4BLB A;  3CQZ C;  2RGR A;  1DCO A;  2EBB A;  2KWA A;  3FKI A;  4BY7 K;  3GTG C;  1VGX A;  3HOW C;  3GSI A;  1TWF A;  2JA6 A;  2JA8 K;  4Y52 C;  1IQ0 A;  5C4X K;  1TWG K;  3BP8 C;  1Y1W C;  1WSV A;  1VJE A;  3HOX K;  1VRQ C;  2E2H C;  2R93 C;  3LAJ A;  3HKZ D;  3GTM A;  3S2D C;  3CQZ A;  1J6W A;  5JVO A;  3GTP A;  1JOE A;  3N0B A;  4BBS K;  4RMF A;  3GTG A;  2WB1 L;  4XLN A;  4ILD A;  4BY7 C;  4BKW A;  2NVQ K;  3AH5 A;  4P9S A;  1HI9 A;  1Y1W A;  4C45 A;  1WQF A;  2JA8 C;  5C4X C;  1TWG C;  1ZBS A;  2E2H A;  3HOX C;  2R93 A;  5C3E K;  4GTB A;  3A8K A;  4BBS C;  4C3I K;  4G0V A;  3S0X A;  4KAS A;  2E2J K;  3Q3Q A;  4KC6 A;  2NVQ C;  4OIQ A;  3S1R K;  2V6S A;  4A3K K;  4P5B A;  2WAQ L;  3FOE A;  4XCH A;  1O28 A;  5C3E C;  4A3E K;  4KB4 A;  4QJV A;  1O27 A;  5FJ8 K;  1SMY A;  4GTE A;  4C3I C;  4GTA A;  2R7Z K;  2E2J C;  1BS2 A;  5C44 K;  4A3F K;  3SZY A;  1SFO K;  4OIR A;  4Y7N K;  1ZYR A;  3S1R C;  1INN A;  1DCH A;  4A3K C;  1XXA A;  2BE5 A;  4YG2 A;  1TWH K;  4OIP A;  4KMA A;  3OPF A;  2PPB A;  3GTL K;  4A3E C;  1WQH A;  1IE0 A;  1I6H K;  3AQP A;  2V6U A;  1K83 K;  2R7Z C;  5CJ9 A;  4A3G K;  3N0C A;  5IP9 C;  2GSO A;  5C44 C;  4A3F C;  1PJ7 A;  5IYD K;  4AYB L;  1SFO C;  2ZUE A;  4Y7N C;  4BXX K;  1AB4 A;  2JA6 K;  4C3J K;  1TWH C;  2JA7 K;  3H0G A;  3AQO A;  1I6V A;  3GTL C;  2A69 A;  3GTM K;  3GTP K;  1I6H C;  4OIN A;  2R7Z A;  1Y1V K;  3S1M K;  1K83 C;  3GTO K;  4A3G C;  1SFO A;  1XZP A;  2PMZ D;  5C4J C;  3HOZ K;  2D6F C;  1XXB A;  1IBA A;  4BLA A;  3MML B;  2W7V A;  1TWH A;  1Y1W K;  4BXX C;  4KAT A;  2JA6 C;  4C3J C;  2JA7 C;  3GTL A;  1O2B A;  5TMC A;  1C0A A;  4LR2 A;  3GTM C;  5TMF A;  3GTP C;  1K83 A;  2XCO A;  1Y1V C;  4LQY A;  3S1M C;  3M4O K;  3GTO C;  3BUE A;  1VLO A;  3HOZ C;  3K7A K;  3S2H K;  3S1N K;  3RZD K;  1V5V A;  2JA7 A;  4GTF A;  4LJZ A;  3GTJ A;  4KN4 A;  3S15 K;  2R92 A;  1WOR A;  1JVI A;  1Y1V A;  3HOU K;  1O29 A;  4XLP A;  2XCR B;  1ZQ1 C;  3SZZ A;  3JST A;  3EQL A;  4A3I K;  1F9N A;  3GTO A;  3V4G A;  1O26 A;  1USM A;  3LAP A;  3M4O C;  5IP7 C;  3HOV K;  4WJ3 M;  3K7A C;  3S2H C;  3S1N C;  3RZD C;  2B63 C;  2E2I K;  2O5J A;  3S15 C;  1EFW A;  1PJ5 A;  3M3Y K;  3LPX A;  4G7H A;  1XXC A;  1F7V A;  2PA8 L;  2RH6 A;  4M1X A;  4J3N A;  3HOU C;  2ZUF A;  4QIW L;  4AYB D;  4LK1 A;  4A3I C;  3GDZ A;  3HXA A;  3GEI A;  3GIR A;  4FZB A;  3GTQ K;  3HOV C;  3WOD A;  2B63 A;  5IYB K;  4C2M K;  1EI6 A;  2E2I C;  1BJT A;  1WOP A;  5M3F K;  1USO A;  3H0G K;  2Y0S D;  4KMD A;  4Q4Z A;  4P5A A;  2VUM K;  3M3Y C;  4AH6 A;  3T00 A;  3NUH A;  2XCQ A;  3CAG A;  5IP9 K;  4KAW X;  3VA7 A;  3T01 A;  3GTQ C;  1J6X A;  3N3Y A;  1BGW A;  3HOY K;  5IYB C;  4C2M C;  2E2I A;  2A6E A;  4WJ4 A;  1O25 A;  3TFI A;  3PO2 C;  3TTG A;  4GZY A;  3H0G C;  1TWC A;  4MEX A;  2VUM C;  5EGH A;  3S1Q K;  1B4A A;  3S17 K;  5IOR A;  5CHP A;  4OIO A;  3FHZ A;  4JK1 A;  3PO3 K;  3GTQ A;  1I50 K;  2CFA B;  4A93 K;  5C4J K;  4KDD A;  4MEY A;  5TJ3 A;  4KB2 A;  3HOY C;  1F7U A;  2VUM A;  3GTJ K;  5EGE A;  1WOS A;  2WB1 D;  2R92 K;  3S1Q C;  2P8T A;  3S17 C;  5M5W K;  2ZFZ A;  1IS1 A;  3PO3 C;  1I50 C;  4A93 C;  4A3C K;  3IPJ A;  5L46 A;  5D4D A;  1TWA K;  1WCM K;  4KAR A;  4YFX A;  1YCL A;  2JA5 C;  4O2D A;  4QIW D;  3GTJ C;  4FM9 A;  5M3M K;  1O24 A;  2R92 C;  3AD8 C;  1R9T K;  1JQW A;  2NVT K;  3H3V L;  1I50 A;  5IOS A;  5IP7 K;  2WAQ D;  5FLM K;  5M5X K;  1J98 A;  2YU9 K;  4A3C C;  2A6H A;  1WOO A;  1TWA C;  1X31 C;  2NVY K;  1WCM C;  2B63 K;  2GAG C;  2JA5 A;  4G0U A;  4GTC A;  5IYC K;  4C3H K;  3TFJ A;  4LLG A;  3BP3 A;  4LOW A;  2Y3P A;  1IL2 A;  4BY1 K;  1R9T C;  2NVT C;  3G4A A;  4BBR K;  5FLM C;  4G7Z A;  2YU9 C;  1TWA A;  4NOI A; 
#chains in the Genus database with same CATH homology
 1IE0 A;  1JVI A;  1VH2 A;  1YCL A;  1J6V A;  1JQW A;  1J98 A;  1J6X A;  1INN A;  5E68 A;  1J6W A;  1JOE A;  1VJE A;  1VGX A;  4XCH A;  2FQO A;  2FQT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...