1UV7A

Periplasmic domain of epsm from vibrio cholerae
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
80
structure length
76
Chain Sequence
QPLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRGVVEVKRLQLKRGG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport
molecule keywords GENERAL SECRETION PATHWAY PROTEIN M
publication title The Crystal Structure of the Periplasmic Domain of the Type II Secretion System Protein Epsm from Vibrio Cholerae: The Simplest Version of the Ferredoxin Fold
pubmed doi rcsb
source organism Vibrio cholerae
total genus 18
structure length 76
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 1uv7A00
2W7VA 5HL8A 1UV7A
chains in the Genus database with same CATH superfamily
3HOXK 4P5BA 3A8JA 4A3KK 1J98A 3GTLA 1IE0A 3M3YK 5C4XC 1J6WA 3CQZK 1IS1A 4WILA 5C3EC 5CHPA 1BJTA 5TMCA 2PPBA 1WIHA 4WJ3M 1TWAC 1I6HC 1F9NA 4P9SA 1EK8A 1Y1WC 3IPJA 1V5VA 4A3LC 4C3JC 2A68A 3HKZD 1TWHC 3S16K 2VUMC 2XCRB 4Y7NC 1DCHA 1ZBSA 2YU9C 3ADAC 4BBSC 4PABA 3I4NK 4A93C 3HXAA 1ZQ1C 1I3QK 4LJZA 3GTKC 1F7UA 4Q4ZA 1DCPA 4J3NA 2ZUEA 3GTGA 3L4JA 2JA6C 2FQOA 1L0WA 3AD8C 3N0BA 4BXXK 4XSZA 1IBAA 4RMFA 1O25A 2R93K 1VRQC 3S1MK 3TFIA 1X31C 4GTFA 5M5YK 3CAGA 2R93A 3BP8C 3WODA 2PA8D 4A3CC 2ZFZA 2R92K 1WOPA 2GAHC 1JQWA 5HL8A 3S14C 5C3EK 4MEXA 3HOXC 2JA5C 2NVTC 1I6HK 4PAAA 4G7HA 4OIOA 3M3YC 2NVYA 3LPXA 4A3JC 2RGRA 1TWAA 3CQZC 3OPFA 4WJ4A 2V6TA 3GEHA 3H0GC 1Y1WA 1USMA 3TFJA 2E2IC 4KASA 5IP9K 1TWHA 4KC6A 3AD9C 3S1RC 4BBSK 2VUMA 1TWFC 2GSOA 4LOWA 2KWAA 2YU9A 3GTKK 1J6VA 3GIRA 3AQOA 2Y0SL 3N3YA 3S16C 3HOWK 3FHZA 2WB1L 2R7ZC 4KMAA 5E68A 1SMYA 4G7OA 3EQLA 2GAGC 1I3QC 2JA6A 4NOIA 3SZYA 1WOSA 4C3HC 4XLNA 5FJ8K 3OREA 1R9TC 3PO2C 4FZBA 1Y1VK 3H3VD 2B63A 4BXXC 1UV7A 4A3CK 4GTLA 3HKZL 1GE9A 3TFHA 4YFXA 3HOZK 3S17C 3S1MC 4OIQA 2A69A 1HI9A 1XZPA 4BLBA 3N0CA 3A8KA 3RZDC 2JA5K 2NVTK 2R92C 1B4BA 1B4AA 1SFOK 2O5JA 3OEPA 4ILDA 4A3JK 4GTBA 3AD7C 2JA5A 2GSUA 3H0GK 1TWCC 4KB4A 3CQZA 2E2IK 3GDZA 3H0GA 3S1RK 4A3DK 3BUEA 1TWFK 3G4CA 4A3GK 1TWFA 2PA8L 5IP9C 4A3IK 2R7ZK 4KM8A 1I50K 3T01A 3HOYK 1BS2A 4OINA 3GSIA 4AH6A 1XXAA 3HOVC 1EFWA 4C2MC 4A3MC 1I3QA 4C3HK 5JFEA 2ZUFA 1JVIA 3HOWC 4G7ZA 1R9TK 2CFAA 3PO2K 2BE5A 4GTAA 1R9TA 1O2BA 4GZYA 4KMDA 2JA7K 1VJEA 1XZPB 3S17K 4BY7K 3GTPC 1XZQA 2O5IA 3SZZA 1Y1VC 4KN4A 3T00A 3RZDK 2NVQC 3M4OC 1O27A 4KM9A 2NVXC 4LR2A 3GTQK 3HOZC 5CJ9A 5IOQA 1I6VA 1USOA 2R92A 3FKIC 4JK1A 4ZH4A 1O2FB 1TWCK 4AYBD 1AB4A 2A6EA 5M3MK 1SFOC 4GFQA 1O2AA 3AQPA 1J6XA 4YG2A 4XLPA 3V4GA 4LLGA 4KMHA 3H3VL 4YFKA 3JSTA 3PO3C 3GTJK 1IW7A 5TMFA 4A3DC 5TJ3A 4MQ9A 1RU0A 4GTCA 2E2JC 1VH2A 3HOVK 4KMUA 4A3GC 4C2MK 1BGWA 4A3MK 1ZXOA 3GTKA 1WQHA 4A3BK 3LAJA 2PHCB 4A3IC 1I50C 4LK1A 3HOYC 5IP7K 5IYBC 4Q5SA 2WAQD 1YCLA 3G4AA 3VA7A 1O29A 4DDQA 3GTPK 1WQGA 1O26A 5EGHA 1YNNA 4M1XA 3GTPA 1WORA 3S2HC 3GEIA 2FQTA 1XPPA 5IYDK 4BKWA 3LAPA 2NVQK 3M4OK 1PJ5A 1Y1VA 1DCOA 3GTMC 3RZOC 2JA7C 1K83C 2NVXK 4BY7C 4Y52K 4BBRK 2NVXA 2EBBA 3FKIK 2PMZD 1C0AA 3Q3QA 4KAWX 4C3IK 3FKIA 3L4KA 5EGEA 5L46A 3GTQC 4MEYA 1SFOA 2JA8K 4X6AC 4G0WA 3GTOK 1ISEA 3PO3K 4C45A 1YNJA 1F93A 3S1NC 1VGXA 4OIPA 2E2IA 2E2JK 5IOSA 2A6HA 3FOEA 4A3EC 2WB1D 1HQMA 3GTJC 1XXBA 4YFNA 1ZVUA 1WQFA 5IYCK 2R7ZA 2E2HC 5IYBK 1I50A 2CW0A 3QX3A 4BY1C 5IORA 2GSNA 1EH1A 2NVYC 1TWGC 3I4MC 4AYBL 4QIWD 4A3BC 3NUHA 3S1QK 1WSRA 2XCQA 1G51A 4KDDA 5IP7C 5M5WK 3S2HK 1EI6A 4G0VA 3GEEA 3GTMK 2V6SA 3BP3A 3RZOK 1K83K 3GTMA 4O2DA 2Y3PA 2JA7A 4XCHA 1K83A 1INNA 1VLOA 2V6UA 3FOFA 5FLMK 3GTGK 2RH6A 5IYDC 3K7AC 1PJ7A 4KATA 2D6FC 4Y52C 5C4JC 4BBRC 3S15K 4X6AK 3GTQA 4QJVA 4C3IC 2P5MA 2WAQL 3S1NK 1KQ4A 5C44K 2B63C 1TWCA 1WSVA 3S2DC 3S0XA 2JA8C 1WOOA 3HOUK 3GTOC 4A3EK 1XXCA 1WCMC 2XCOA 5C4XK 3DXJA 4KN7A 3A8IA 4A3FC 1O28A 3GTJA 4GT9A 2E2HK 4BY1K 3GTLC 2PMZL 2NVYK 1TWGK 1TWAK 3I4MK 2E2HA 1F7VA 4GTEA 4A3KC 2CFAB 3ERED 5M3FK 1Y1WK 4LK0A 1TWGA 4A3LK 4C3JK 1TWHK 1YX2A 5IYCC 4LQYA 2VUMK 4BLAA 4Y7NK 5M5XK 2YU9K 2W7VA 4G0UA 4A93K 1XZQB 3S1QC 1IL2A 1O24A 1DD5A 1ZYRA 4KARA 1PJ6A 2JH3A 3K7AK 1JOEA 1BDFA 2JA6K 5C4JK 3I4NC 3MMLB 4QJVB 5JVOA 3TTGA 5FLMC 3GTGC 2P8TA 2B63K 3AH5A 4GTDA 4P5AA 4OIRA 4QIWL 3S2DK 4KB2A 4XSXA 5IOTA 3S15C 1EQRA 4FM9A 3T02A 5D4DA 1IQ0A 3GTOA 1WCMK 2R93C 5C44C 4A3FK 3S14K 1WCMA 3HOUC 2Y0SD 3GTLK
chains in the Genus database with same CATH topology
2W7VA 5HL8A 1UV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W7V A;  5HL8 A;  1UV7 A; 
#chains in the Genus database with same CATH topology
 3HOX K;  4P5B A;  3A8J A;  4A3K K;  1J98 A;  3GTL A;  1IE0 A;  3M3Y K;  5C4X C;  1J6W A;  3CQZ K;  1IS1 A;  4WIL A;  5C3E C;  5CHP A;  1BJT A;  5TMC A;  2PPB A;  1WIH A;  4WJ3 M;  1TWA C;  1I6H C;  1F9N A;  4P9S A;  1EK8 A;  1Y1W C;  3IPJ A;  1V5V A;  4A3L C;  4C3J C;  2A68 A;  3HKZ D;  1TWH C;  3S16 K;  2VUM C;  2XCR B;  4Y7N C;  1DCH A;  1ZBS A;  2YU9 C;  3ADA C;  4BBS C;  4PAB A;  3I4N K;  4A93 C;  3HXA A;  1ZQ1 C;  1I3Q K;  4LJZ A;  3GTK C;  1F7U A;  4Q4Z A;  1DCP A;  4J3N A;  2ZUE A;  3GTG A;  3L4J A;  2JA6 C;  2FQO A;  1L0W A;  3AD8 C;  3N0B A;  4BXX K;  4XSZ A;  1IBA A;  4RMF A;  1O25 A;  2R93 K;  1VRQ C;  3S1M K;  3TFI A;  1X31 C;  4GTF A;  5M5Y K;  3CAG A;  2R93 A;  3BP8 C;  3WOD A;  2PA8 D;  4A3C C;  2ZFZ A;  2R92 K;  1WOP A;  2GAH C;  1JQW A;  5HL8 A;  3S14 C;  5C3E K;  4MEX A;  3HOX C;  2JA5 C;  2NVT C;  1I6H K;  4PAA A;  4G7H A;  4OIO A;  3M3Y C;  2NVY A;  3LPX A;  4A3J C;  2RGR A;  1TWA A;  3CQZ C;  3OPF A;  4WJ4 A;  2V6T A;  3GEH A;  3H0G C;  1Y1W A;  1USM A;  3TFJ A;  2E2I C;  4KAS A;  5IP9 K;  1TWH A;  4KC6 A;  3AD9 C;  3S1R C;  4BBS K;  2VUM A;  1TWF C;  2GSO A;  4LOW A;  2KWA A;  2YU9 A;  3GTK K;  1J6V A;  3GIR A;  3AQO A;  2Y0S L;  3N3Y A;  3S16 C;  3HOW K;  3FHZ A;  2WB1 L;  2R7Z C;  4KMA A;  5E68 A;  1SMY A;  4G7O A;  3EQL A;  2GAG C;  1I3Q C;  2JA6 A;  4NOI A;  3SZY A;  1WOS A;  4C3H C;  4XLN A;  5FJ8 K;  3ORE A;  1R9T C;  3PO2 C;  4FZB A;  1Y1V K;  3H3V D;  2B63 A;  4BXX C;  1UV7 A;  4A3C K;  4GTL A;  3HKZ L;  1GE9 A;  3TFH A;  4YFX A;  3HOZ K;  3S17 C;  3S1M C;  4OIQ A;  2A69 A;  1HI9 A;  1XZP A;  4BLB A;  3N0C A;  3A8K A;  3RZD C;  2JA5 K;  2NVT K;  2R92 C;  1B4B A;  1B4A A;  1SFO K;  2O5J A;  3OEP A;  4ILD A;  4A3J K;  4GTB A;  3AD7 C;  2JA5 A;  2GSU A;  3H0G K;  1TWC C;  4KB4 A;  3CQZ A;  2E2I K;  3GDZ A;  3H0G A;  3S1R K;  4A3D K;  3BUE A;  1TWF K;  3G4C A;  4A3G K;  1TWF A;  2PA8 L;  5IP9 C;  4A3I K;  2R7Z K;  4KM8 A;  1I50 K;  3T01 A;  3HOY K;  1BS2 A;  4OIN A;  3GSI A;  4AH6 A;  1XXA A;  3HOV C;  1EFW A;  4C2M C;  4A3M C;  1I3Q A;  4C3H K;  5JFE A;  2ZUF A;  1JVI A;  3HOW C;  4G7Z A;  1R9T K;  2CFA A;  3PO2 K;  2BE5 A;  4GTA A;  1R9T A;  1O2B A;  4GZY A;  4KMD A;  2JA7 K;  1VJE A;  1XZP B;  3S17 K;  4BY7 K;  3GTP C;  1XZQ A;  2O5I A;  3SZZ A;  1Y1V C;  4KN4 A;  3T00 A;  3RZD K;  2NVQ C;  3M4O C;  1O27 A;  4KM9 A;  2NVX C;  4LR2 A;  3GTQ K;  3HOZ C;  5CJ9 A;  5IOQ A;  1I6V A;  1USO A;  2R92 A;  3FKI C;  4JK1 A;  4ZH4 A;  1O2F B;  1TWC K;  4AYB D;  1AB4 A;  2A6E A;  5M3M K;  1SFO C;  4GFQ A;  1O2A A;  3AQP A;  1J6X A;  4YG2 A;  4XLP A;  3V4G A;  4LLG A;  4KMH A;  3H3V L;  4YFK A;  3JST A;  3PO3 C;  3GTJ K;  1IW7 A;  5TMF A;  4A3D C;  5TJ3 A;  4MQ9 A;  1RU0 A;  4GTC A;  2E2J C;  1VH2 A;  3HOV K;  4KMU A;  4A3G C;  4C2M K;  1BGW A;  4A3M K;  1ZXO A;  3GTK A;  1WQH A;  4A3B K;  3LAJ A;  2PHC B;  4A3I C;  1I50 C;  4LK1 A;  3HOY C;  5IP7 K;  5IYB C;  4Q5S A;  2WAQ D;  1YCL A;  3G4A A;  3VA7 A;  1O29 A;  4DDQ A;  3GTP K;  1WQG A;  1O26 A;  5EGH A;  1YNN A;  4M1X A;  3GTP A;  1WOR A;  3S2H C;  3GEI A;  2FQT A;  1XPP A;  5IYD K;  4BKW A;  3LAP A;  2NVQ K;  3M4O K;  1PJ5 A;  1Y1V A;  1DCO A;  3GTM C;  3RZO C;  2JA7 C;  1K83 C;  2NVX K;  4BY7 C;  4Y52 K;  4BBR K;  2NVX A;  2EBB A;  3FKI K;  2PMZ D;  1C0A A;  3Q3Q A;  4KAW X;  4C3I K;  3FKI A;  3L4K A;  5EGE A;  5L46 A;  3GTQ C;  4MEY A;  1SFO A;  2JA8 K;  4X6A C;  4G0W A;  3GTO K;  1ISE A;  3PO3 K;  4C45 A;  1YNJ A;  1F93 A;  3S1N C;  1VGX A;  4OIP A;  2E2I A;  2E2J K;  5IOS A;  2A6H A;  3FOE A;  4A3E C;  2WB1 D;  1HQM A;  3GTJ C;  1XXB A;  4YFN A;  1ZVU A;  1WQF A;  5IYC K;  2R7Z A;  2E2H C;  5IYB K;  1I50 A;  2CW0 A;  3QX3 A;  4BY1 C;  5IOR A;  2GSN A;  1EH1 A;  2NVY C;  1TWG C;  3I4M C;  4AYB L;  4QIW D;  4A3B C;  3NUH A;  3S1Q K;  1WSR A;  2XCQ A;  1G51 A;  4KDD A;  5IP7 C;  5M5W K;  3S2H K;  1EI6 A;  4G0V A;  3GEE A;  3GTM K;  2V6S A;  3BP3 A;  3RZO K;  1K83 K;  3GTM A;  4O2D A;  2Y3P A;  2JA7 A;  4XCH A;  1K83 A;  1INN A;  1VLO A;  2V6U A;  3FOF A;  5FLM K;  3GTG K;  2RH6 A;  5IYD C;  3K7A C;  1PJ7 A;  4KAT A;  2D6F C;  4Y52 C;  5C4J C;  4BBR C;  3S15 K;  4X6A K;  3GTQ A;  4QJV A;  4C3I C;  2P5M A;  2WAQ L;  3S1N K;  1KQ4 A;  5C44 K;  2B63 C;  1TWC A;  1WSV A;  3S2D C;  3S0X A;  2JA8 C;  1WOO A;  3HOU K;  3GTO C;  4A3E K;  1XXC A;  1WCM C;  2XCO A;  5C4X K;  3DXJ A;  4KN7 A;  3A8I A;  4A3F C;  1O28 A;  3GTJ A;  4GT9 A;  2E2H K;  4BY1 K;  3GTL C;  2PMZ L;  2NVY K;  1TWG K;  1TWA K;  3I4M K;  2E2H A;  1F7V A;  4GTE A;  4A3K C;  2CFA B;  3ERE D;  5M3F K;  1Y1W K;  4LK0 A;  1TWG A;  4A3L K;  4C3J K;  1TWH K;  1YX2 A;  5IYC C;  4LQY A;  2VUM K;  4BLA A;  4Y7N K;  5M5X K;  2YU9 K;  2W7V A;  4G0U A;  4A93 K;  1XZQ B;  3S1Q C;  1IL2 A;  1O24 A;  1DD5 A;  1ZYR A;  4KAR A;  1PJ6 A;  2JH3 A;  3K7A K;  1JOE A;  1BDF A;  2JA6 K;  5C4J K;  3I4N C;  3MML B;  4QJV B;  5JVO A;  3TTG A;  5FLM C;  3GTG C;  2P8T A;  2B63 K;  3AH5 A;  4GTD A;  4P5A A;  4OIR A;  4QIW L;  3S2D K;  4KB2 A;  4XSX A;  5IOT A;  3S15 C;  1EQR A;  4FM9 A;  3T02 A;  5D4D A;  1IQ0 A;  3GTO A;  1WCM K;  2R93 C;  5C44 C;  4A3F K;  3S14 K;  1WCM A;  3HOU C;  2Y0S D;  3GTL K; 
#chains in the Genus database with same CATH homology
 2W7V A;  5HL8 A;  1UV7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...