The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
18
|
sequence length |
80
|
structure length |
76
|
Chain Sequence |
QPLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRGVVEVKRLQLKRGG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of the Periplasmic Domain of the Type II Secretion System Protein Epsm from Vibrio Cholerae: The Simplest Version of the Ferredoxin Fold
pubmed doi rcsb |
| molecule keywords |
GENERAL SECRETION PATHWAY PROTEIN M
|
| molecule tags |
Transport
|
| source organism |
Vibrio cholerae
|
| total genus |
18
|
| structure length |
76
|
| sequence length |
80
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-01-15 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | General secretion pathway protein M, EpsM |
#chains in the Genus database with same CATH superfamily 2W7V A; 5HL8 A; 1UV7 A; #chains in the Genus database with same CATH topology 4A3L C; 3GTP K; 2JA6 K; 2JA7 A; 1ZXO A; 3OPF A; 1J98 A; 5IYC K; 4OIP A; 5IYB K; 5M5Y K; 5C4J C; 3H0G C; 4GT9 A; 1F7V A; 2CFA B; 3S1M C; 2E2J C; 3S1Q K; 4C3H K; 2JA8 C; 1Y1V K; 2EBB A; 2ZUE A; 3RZO K; 1IBA A; 4WIL A; 1I3Q C; 1XZQ A; 1WOS A; 3GTO K; 2JA7 C; 1Y1W A; 1VLO A; 3S2D K; 3N3Y A; 3WOD A; 2P8T A; 1F7U A; 1VH2 A; 3GEH A; 1VGX A; 5IP7 C; 2Y0S D; 3AD7 C; 3FOE A; 4KC6 A; 4Y7N K; 3OEP A; 3LAP A; 1PJ6 A; 2R93 A; 3VA7 A; 3BP3 A; 4BBR C; 5FLM K; 3PO2 K; 3M4O K; 5IOQ A; 1TWA K; 4OIR A; 3S2H C; 2O5J A; 4PAA A; 1XZP B; 4G0V A; 1C0A A; 4FM9 A; 4A3M K; 1SMY A; 5C44 C; 4BY7 C; 1YNJ A; 5FJ8 K; 4BXX C; 2R92 A; 5EGH A; 1SFO K; 2PMZ L; 4LQY A; 3LPX A; 1WCM C; 2NVQ C; 1TWH A; 3GTJ A; 2R93 C; 2FQT A; 3L4K A; 3BUE A; 1ZVU A; 2NVY A; 4BBS C; 1J6X A; 3S14 K; 4A3F C; 3GTL A; 1O27 A; 4GZY A; 1EH1 A; 1Y1W K; 4MQ9 A; 3L4J A; 3BP8 C; 3GIR A; 5IP9 C; 3TFJ A; 3CAG A; 2V6U A; 2R92 C; 4A3J K; 4QJV A; 2B63 C; 1G51 A; 2GSO A; 3GTM A; 3NUH A; 1WOO A; 4P9S A; 1TWH C; 3GTJ C; 4KM8 A; 4A3G C; 3S0X A; 3AQP A; 4GTB A; 3GEE A; 1WSR A; 4Y52 C; 1TWC A; 3I4N C; 2E2I A; 3M3Y C; 2NVY C; 4A3K K; 3ORE A; 4A3C K; 3RZD C; 3S16 K; 4XSZ A; 3GTL C; 4A3I K; 1I50 A; 3GTK A; 2PHC B; 4BLB A; 3HOY C; 3HOX K; 1XXA A; 5M3F K; 1TWF K; 5TMC A; 1IL2 A; 3GTG K; 1YCL A; 2VUM A; 4XCH A; 3S17 C; 1O2A A; 5M5X K; 3K7A K; 4KB2 A; 3S1N K; 1R9T K; 3GTM C; 1YNN A; 2RH6 A; 3FKI A; 3HOV C; 2JA5 A; 3HKZ L; 1B4A A; 4AYB L; 4A3D K; 3GDZ A; 1USM A; 1TWC C; 1USO A; 2ZUF A; 2E2I C; 2Y3P A; 3PO3 C; 4A3B K; 1I50 C; 4A3E K; 3GTK C; 1I3Q A; 4C3I K; 1XXC A; 4QIW D; 3FHZ A; 2PPB A; 2YU9 A; 1WQF A; 2VUM C; 1ZQ1 C; 2NVX K; 2D6F C; 4A93 C; 1F93 A; 1ISE A; 1EI6 A; 1XZQ B; 3S15 K; 2XCO A; 3HOZ K; 4KN4 A; 4G0U A; 3FKI C; 4WJ3 M; 2JA5 C; 5C4X K; 1YX2 A; 4A3L K; 1BDF A; 1J6W A; 4MEX A; 1O24 A; 4GTC A; 4P5B A; 5IYD C; 4BY1 C; 4P5A A; 4QIW L; 5E68 A; 1BJT A; 5C4J K; 2NVT C; 3H0G K; 2GAG C; 4KMH A; 1L0W A; 4KAT A; 1I6H C; 3SZY A; 2YU9 C; 4LK0 A; 1WCM A; 3A8J A; 4YFN A; 3S1M K; 2E2J K; 4C2M C; 3GTQ C; 2PMZ D; 2R7Z A; 2JA8 K; 3I4M C; 3TTG A; 1RU0 A; 1I3Q K; 5IOS A; 2JA7 K; 3V4G A; 4J3N A; 1DCH A; 4LLG A; 5C3E C; 3T00 A; 4Q4Z A; 2E2H A; 3T02 A; 5JFE A; 3CQZ A; 2B63 A; 1PJ5 A; 1TWG A; 5IP7 K; 5M3M K; 1HI9 A; 3AH5 A; 4X6A C; 2V6T A; 4XLP A; 4BBR K; 1UV7 A; 4GTF A; 3GSI A; 3AQO A; 1BGW A; 3HOU C; 5IOR A; 2R7Z C; 3S2H K; 4LR2 A; 3HOW C; 2BE5 A; 4QJV B; 5C44 K; 4BY7 K; 1O2F B; 4GTE A; 1K83 A; 3H3V D; 1F9N A; 2E2H C; 4OIQ A; 2W7V A; 4BXX K; 3CQZ C; 1O28 A; 1TWG C; 4OIO A; 2RGR A; 2WAQ L; 4KN7 A; 1WIH A; 4WJ4 A; 1WCM K; 2NVQ K; 4OIN A; 1J6V A; 2R93 K; 1EK8 A; 3GTP A; 2JA6 A; 3ADA C; 4GTL A; 2GAH C; 4BBS K; 3H3V L; 4A3F K; 4ZH4 A; 4AH6 A; 3AD8 C; 2A69 A; 3HKZ D; 4AYB D; 2ZFZ A; 1ZYR A; 5IP9 K; 5M5W K; 4BKW A; 1K83 C; 4KMU A; 4C3J C; 2R92 K; 2B63 K; 5D4D A; 3S1R C; 1WQH A; 1O2B A; 1O29 A; 4KAS A; 4DDQ A; 1TWH K; 3GTJ K; 4KMA A; 3GTP C; 1X31 C; 3GTO A; 4A3G K; 5IOT A; 2JA6 C; 4KDD A; 4Y52 K; 3I4N K; 2O5I A; 3M3Y K; 2NVY K; 4GTA A; 5IYC C; 3RZD K; 5IYB C; 3GTL K; 4M1X A; 1XPP A; 2WB1 D; 3HOY K; 4Q5S A; 4MEY A; 3T01 A; 3S17 K; 3S1Q C; 1TWA A; 4GTD A; 2V6S A; 4C3H C; 3GTM K; 1Y1V C; 3RZO C; 3GTQ A; 3FOF A; 3HOV K; 2GSU A; 2WB1 L; 3GTO C; 4FZB A; 4LJZ A; 1TWC K; 2E2I K; 5JVO A; 4RMF A; 3PO3 K; 2P5M A; 4G7Z A; 3S2D C; 3A8I A; 5TJ3 A; 1I50 K; 2CW0 A; 3GTK K; 4XLN A; 1SFO A; 3N0B A; 1I6V A; 4KM9 A; 3IPJ A; 2KWA A; 4Y7N C; 1EFW A; 2VUM K; 4A93 K; 5FLM C; 3PO2 C; 3M4O C; 4C45 A; 5EGE A; 1DD5 A; 1TWA C; 2JH3 A; 1DCO A; 4YFK A; 2PA8 D; 3FKI K; 2CFA A; 1JVI A; 2JA5 K; 4A3M C; 2XCR B; 3HXA A; 1INN A; 5IYD K; 4BY1 K; 5L46 A; 1IW7 A; 2NVT K; 1O26 A; 2A68 A; 1SFO C; 4KB4 A; 1B4B A; 1AB4 A; 4BLA A; 3Q3Q A; 1I6H K; 3A8K A; 5CHP A; 2PA8 L; 2YU9 K; 4JK1 A; 3GEI A; 4KAR A; 4G7H A; 4C2M K; 1JOE A; 2WAQ D; 3GTQ K; 3S14 C; 4LOW A; 2A6H A; 4YG2 A; 3I4M K; 4KAW X; 3EQL A; 4YFX A; 1Y1W C; 2Y0S L; 5HL8 A; 1IQ0 A; 4KMD A; 3ERE D; 1TWF A; 1XZP A; 1XXB A; 3GTG A; 5C3E K; 4A3J C; 1IS1 A; 1WSV A; 1GE9 A; 5TMF A; 1PJ7 A; 1KQ4 A; 1R9T A; 1V5V A; 1O25 A; 1WOR A; 1EQR A; 4X6A K; 4GFQ A; 5C4X C; 3AD9 C; 3TFI A; 4G7O A; 1BS2 A; 4A3K C; 4A3C C; 3HOU K; 2R7Z K; 3S16 C; 4A3I C; 5CJ9 A; 1IE0 A; 3TFH A; 3HOX C; 3N0C A; 3HOW K; 1TWF C; 3GTG C; 2E2H K; 2NVX A; 2XCQ A; 4LK1 A; 1DCP A; 3CQZ K; 3K7A C; 4G0W A; 1TWG K; 3S1N C; 3MML B; 1R9T C; 1Y1V A; 1VJE A; 4A3D C; 3SZZ A; 1WOP A; 1ZBS A; 2FQO A; 4A3B C; 4A3E C; 3DXJ A; 3LAJ A; 3H0G A; 2GSN A; 1HQM A; 3G4A A; 4O2D A; 4NOI A; 1WQG A; 4C3I C; 4XSX A; 1K83 K; 4ILD A; 3G4C A; 1JQW A; 4C3J K; 2NVX C; 3JST A; 3S15 C; 3HOZ C; 2A6E A; 3S1R K; 3QX3 A; 1VRQ C; 4PAB A; #chains in the Genus database with same CATH homology 2W7V A; 5HL8 A; 1UV7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
