1IBAA

Glucose permease (domain iib), nmr, 11 structures
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
78
structure length
78
Chain Sequence
MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNFG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Phosphotransferase
molecule keywords GLUCOSE PERMEASE
publication title Solution structure of the IIB domain of the glucose transporter of Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 15
structure length 78
sequence length 78
ec nomenclature ec 2.7.1.199: Protein-N(pi)-phosphohistidine--D-glucose phosphotransferase.
pdb deposition date 1996-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00367 PTS_EIIB phosphotransferase system, EIIB
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.60 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Glucose permease domain IIB 1ibaA00
3IPJA 3BP3A 1IBAA 3BP8C 1O2FB
chains in the Genus database with same CATH superfamily
1I50C 4J3NA 3GTMC 2WB1D 1IQ0A 1XZQA 4BBRK 3S2DK 3GTKC 3GTOK 3S1NK 3GTPA 1TWCK 4KMAA 3CAGA 3BP3A 4GTEA 3S0XA 1SFOA 4P9SA 3OPFA 4BLBA 3HKZD 1F9NA 4KDDA 4Q4ZA 4FM9A 3GTQA 2GAHC 4KMDA 2E2IA 3S16C 4YG2A 4OIRA 5JVOA 3FKIA 5D4DA 3AD9C 2JA6C 3CQZA 2XCRB 4KN4A 3M3YK 1V5VA 4X6AC 3BUEA 4YFNA 5C3EC 5IORA 3WODA 4OIOA 1I3QC 3FOFA 1BS2A 1VH2A 1TWAC 4A3GC 4LJZA 5TJ3A 4Q5SA 5C4XC 1TWHK 3A8IA 1DCOA 1INNA 3TFIA 4KM9A 2Y0SL 5JFEA 5EGEA 2B63A 4KB4A 2R93C 4AYBL 2P8TA 2NVYK 4KAWX 3T01A 3RZOC 4LK1A 2PHCB 1EK8A 4A3KK 4KB2A 1F93A 3GTOA 1BDFA 1Y1VC 1F7UA 4A3MK 1TWCA 1WCMK 5IOTA 4BY7K 4C3HK 4OIPA 5C4JK 1O26A 3GEIA 4KN7A 3GSIA 4O2DA 3AH5A 4QIWL 2O5IA 2XCOA 5FLMC 5C44K 2D6FC 3V4GA 1BGWA 5E68A 1XZQB 3GIRA 4Y52C 2YU9A 4A3LK 2Y3PA 2PMZD 4LQYA 3HOXK 2CFAA 1O2BA 1AB4A 3N0BA 1TWFC 1TWGC 2BE5A 3GTQK 3L4JA 5IP7K 4DDQA 5TMFA 4C3IC 3H0GC 3N0CA 1J98A 3GTJK 3QX3A 4A3CK 2P5MA 3HOUK 3I4MC 1XZPA 4XSZA 4MEXA 3PO2C 1TWHA 3HOVK 4KARA 3TFJA 3NUHA 1K83K 4QJVA 4BKWA 1B4BA 3OREA 3SZYA 3GTMK 2E2HC 1BJTA 1XXBA 1J6XA 5IP9K 4OIQA 5IYCC 3ERED 3GDZA 3GTKK 3FOEA 4MQ9A 1HI9A 1I6VA 1SFOC 2NVQC 2B63K 4A3BC 2ZFZA 2W7VA 2XCQA 5IYDK 1EH1A 2RGRA 3A8KA 3FKIC 2RH6A 3CQZC 1XPPA 2JA6K 4KC6A 3GTLC 4A93K 4A3FK 2JA5C 3K7AC 5FJ8K 3AQOA 4A3DC 3I4NC 1J6VA 4WJ3M 4C3JK 5C3EK 2VUMC 1I3QK 4Y7NC 1KQ4A 3IPJA 3L4KA 3GTJA 1Y1WC 4XCHA 4BLAA 2YU9K 3S1RK 1YNJA 4A3JC 4WILA 4A3GK 5M3FK 3MMLB 3RZDK 3S17K 3M4OK 3A8JA 1JOEA 4YFXA 1L0WA 2JA8C 4KATA 1K83A 2PA8L 2R92A 2JH3A 3GTGK 1I50A 2CFAB 4BBRC 1G51A 4C2MK 4BBSK 5M5XK 3GTMA 4LOWA 3RZOK 2Y0SD 4G7HA 3S2HC 3GTKA 2R7ZC 1XZPB 5CJ9A 4AYBD 1USMA 1IS1A 1J6WA 1X31C 1GE9A 4JK1A 2ZUFA 3LAJA 1I6HC 1WQGA 4G7OA 3SZZA 4QJVB 2A68A 1EQRA 2E2JK 1ZVUA 3VA7A 4OINA 3EQLA 1R9TC 1SMYA 1O24A 2JA6A 3M3YC 3TFHA 1ZBSA 3HOYK 4QIWD 3HOWC 2NVXC 3S15C 1PJ5A 2NVTC 2KWAA 2JA7K 3BP8C 4XLNA 1I3QA 1USOA 1IE0A 3H0GK 5L46A 3S1MK 3S14K 3AQPA 1YCLA 3GEEA 4A3EK 1F7VA 1UV7A 1DCHA 1WQHA 2GSNA 4A3IK 1RU0A 5IYBC 2NVYC 3JSTA 4M1XA 1WORA 3GTGA 1VJEA 4ILDA 2E2HK 4GZYA 1O2AA 2V6SA 4A3KC 4A3MC 1WCMC 3DXJA 1XXAA 4BY7C 1ZXOA 5M5WK 4GTCA 1Y1VA 4C3HC 5C4JC 2R92K 4A3BK 1I50K 4GTLA 5C44C 3G4AA 3S1QC 4LLGA 4RMFA 4BY1C 3GTPC 2WAQL 1IL2A 3PO3C 4P5BA 2PPBA 3GEHA 3HOXC 1ZYRA 5M3MK 3N3YA 3GTLK 4C45A 3OEPA 2JA5K 2O5JA 4G0WA 4A3DK 3I4NK 3GTQC 3AD8C 2JA7A 5IP7C 4NOIA 1VRQC 2E2IC 3H3VL 2VUMK 4MEYA 3T00A 4A3CC 3HOUC 4BXXC 3H0GA 3S16K 1Y1WK 1EFWA 4G0VA 3HOVC 3ADAC 4A3JK 4GT9A 4GFQA 4X6AK 2GSUA 2JA8K 1JQWA 2FQOA 3TTGA 3HOZC 4AH6A 4XLPA 2WB1L 5IP9C 2E2HA 4PABA 4ZH4A 1TWAK 3HXAA 1WSVA 3AD7C 5C4XK 3S2HK 2B63C 1ZQ1C 2PA8D 2R7ZK 1O28A 1YX2A 1DCPA 4XSXA 5IYDC 3S2DC 2R93K 1XXCA 5EGHA 3HKZL 1I6HK 5TMCA 1O2FB 3GTOC 2GSOA 3S1NC 5M5YK 2ZUEA 1TWCC 1IBAA 4A93C 4GTBA 1Y1VK 4YFKA 2A6EA 4A3FC 1DD5A 4KMUA 1R9TK 3GTLA 3T02A 1WIHA 4C3JC 2JA5A 3HOWK 3G4CA 2NVXK 3S15K 2NVTK 5FLMK 5HL8A 2VUMA 2YU9C 1HQMA 3S1RC 1Y1WA 4LR2A 1JVIA 4KM8A 3RZDC 4Y52K 3S17C 3M4OC 1IW7A 1ISEA 5IOQA 4GTDA 4LK0A 3GTGC 4C2MC 5IYBK 4BBSC 3LAPA 1TWFK 1TWGK 4C3IK 4GTFA 1TWHC 3I4MK 1WOOA 1C0AA 1TWAA 3PO2K 2V6UA 2R92C 4WJ4A 1VLOA 4FZBA 2R7ZA 1WSRA 4KMHA 2CW0A 2R93A 2GAGC 2E2JC 2EBBA 3S1QK 1EI6A 4G7ZA 1WQFA 1WOSA 2V6TA 5IYCK 4BY1K 3GTPK 3LPXA 2A6HA 3HOYC 3PO3K 1SFOK 4KASA 2NVQK 1R9TA 2PMZL 1O27A 2A69A 4P5AA 2JA7C 2NVXA 1O25A 2E2IK 3S1MC 2WAQD 3S14C 4A3LC 3FKIK 4BXXK 4A3EC 3CQZK 3Q3QA 4G0UA 4A3IC 5CHPA 4PAAA 3K7AK 3H3VD 3FHZA 3GTJC 1O29A 2NVYA 1TWFA 1PJ7A 1TWGA 4GTAA 4Y7NK 1B4AA 3HOZK 5IOSA 1VGXA 1YNNA 1PJ6A 2FQTA 1WOPA 1WCMA 1K83C
chains in the Genus database with same CATH topology
3IPJA 3BP3A 1IBAA 3BP8C 1O2FB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IPJ A;  3BP3 A;  1IBA A;  3BP8 C;  1O2F B; 
#chains in the Genus database with same CATH topology
 1I50 C;  4J3N A;  3GTM C;  2WB1 D;  1IQ0 A;  1XZQ A;  4BBR K;  3S2D K;  3GTK C;  3GTO K;  3S1N K;  3GTP A;  1TWC K;  4KMA A;  3CAG A;  3BP3 A;  4GTE A;  3S0X A;  1SFO A;  4P9S A;  3OPF A;  4BLB A;  3HKZ D;  1F9N A;  4KDD A;  4Q4Z A;  4FM9 A;  3GTQ A;  2GAH C;  4KMD A;  2E2I A;  3S16 C;  4YG2 A;  4OIR A;  5JVO A;  3FKI A;  5D4D A;  3AD9 C;  2JA6 C;  3CQZ A;  2XCR B;  4KN4 A;  3M3Y K;  1V5V A;  4X6A C;  3BUE A;  4YFN A;  5C3E C;  5IOR A;  3WOD A;  4OIO A;  1I3Q C;  3FOF A;  1BS2 A;  1VH2 A;  1TWA C;  4A3G C;  4LJZ A;  5TJ3 A;  4Q5S A;  5C4X C;  1TWH K;  3A8I A;  1DCO A;  1INN A;  3TFI A;  4KM9 A;  2Y0S L;  5JFE A;  5EGE A;  2B63 A;  4KB4 A;  2R93 C;  4AYB L;  2P8T A;  2NVY K;  4KAW X;  3T01 A;  3RZO C;  4LK1 A;  2PHC B;  1EK8 A;  4A3K K;  4KB2 A;  1F93 A;  3GTO A;  1BDF A;  1Y1V C;  1F7U A;  4A3M K;  1TWC A;  1WCM K;  5IOT A;  4BY7 K;  4C3H K;  4OIP A;  5C4J K;  1O26 A;  3GEI A;  4KN7 A;  3GSI A;  4O2D A;  3AH5 A;  4QIW L;  2O5I A;  2XCO A;  5FLM C;  5C44 K;  2D6F C;  3V4G A;  1BGW A;  5E68 A;  1XZQ B;  3GIR A;  4Y52 C;  2YU9 A;  4A3L K;  2Y3P A;  2PMZ D;  4LQY A;  3HOX K;  2CFA A;  1O2B A;  1AB4 A;  3N0B A;  1TWF C;  1TWG C;  2BE5 A;  3GTQ K;  3L4J A;  5IP7 K;  4DDQ A;  5TMF A;  4C3I C;  3H0G C;  3N0C A;  1J98 A;  3GTJ K;  3QX3 A;  4A3C K;  2P5M A;  3HOU K;  3I4M C;  1XZP A;  4XSZ A;  4MEX A;  3PO2 C;  1TWH A;  3HOV K;  4KAR A;  3TFJ A;  3NUH A;  1K83 K;  4QJV A;  4BKW A;  1B4B A;  3ORE A;  3SZY A;  3GTM K;  2E2H C;  1BJT A;  1XXB A;  1J6X A;  5IP9 K;  4OIQ A;  5IYC C;  3ERE D;  3GDZ A;  3GTK K;  3FOE A;  4MQ9 A;  1HI9 A;  1I6V A;  1SFO C;  2NVQ C;  2B63 K;  4A3B C;  2ZFZ A;  2W7V A;  2XCQ A;  5IYD K;  1EH1 A;  2RGR A;  3A8K A;  3FKI C;  2RH6 A;  3CQZ C;  1XPP A;  2JA6 K;  4KC6 A;  3GTL C;  4A93 K;  4A3F K;  2JA5 C;  3K7A C;  5FJ8 K;  3AQO A;  4A3D C;  3I4N C;  1J6V A;  4WJ3 M;  4C3J K;  5C3E K;  2VUM C;  1I3Q K;  4Y7N C;  1KQ4 A;  3IPJ A;  3L4K A;  3GTJ A;  1Y1W C;  4XCH A;  4BLA A;  2YU9 K;  3S1R K;  1YNJ A;  4A3J C;  4WIL A;  4A3G K;  5M3F K;  3MML B;  3RZD K;  3S17 K;  3M4O K;  3A8J A;  1JOE A;  4YFX A;  1L0W A;  2JA8 C;  4KAT A;  1K83 A;  2PA8 L;  2R92 A;  2JH3 A;  3GTG K;  1I50 A;  2CFA B;  4BBR C;  1G51 A;  4C2M K;  4BBS K;  5M5X K;  3GTM A;  4LOW A;  3RZO K;  2Y0S D;  4G7H A;  3S2H C;  3GTK A;  2R7Z C;  1XZP B;  5CJ9 A;  4AYB D;  1USM A;  1IS1 A;  1J6W A;  1X31 C;  1GE9 A;  4JK1 A;  2ZUF A;  3LAJ A;  1I6H C;  1WQG A;  4G7O A;  3SZZ A;  4QJV B;  2A68 A;  1EQR A;  2E2J K;  1ZVU A;  3VA7 A;  4OIN A;  3EQL A;  1R9T C;  1SMY A;  1O24 A;  2JA6 A;  3M3Y C;  3TFH A;  1ZBS A;  3HOY K;  4QIW D;  3HOW C;  2NVX C;  3S15 C;  1PJ5 A;  2NVT C;  2KWA A;  2JA7 K;  3BP8 C;  4XLN A;  1I3Q A;  1USO A;  1IE0 A;  3H0G K;  5L46 A;  3S1M K;  3S14 K;  3AQP A;  1YCL A;  3GEE A;  4A3E K;  1F7V A;  1UV7 A;  1DCH A;  1WQH A;  2GSN A;  4A3I K;  1RU0 A;  5IYB C;  2NVY C;  3JST A;  4M1X A;  1WOR A;  3GTG A;  1VJE A;  4ILD A;  2E2H K;  4GZY A;  1O2A A;  2V6S A;  4A3K C;  4A3M C;  1WCM C;  3DXJ A;  1XXA A;  4BY7 C;  1ZXO A;  5M5W K;  4GTC A;  1Y1V A;  4C3H C;  5C4J C;  2R92 K;  4A3B K;  1I50 K;  4GTL A;  5C44 C;  3G4A A;  3S1Q C;  4LLG A;  4RMF A;  4BY1 C;  3GTP C;  2WAQ L;  1IL2 A;  3PO3 C;  4P5B A;  2PPB A;  3GEH A;  3HOX C;  1ZYR A;  5M3M K;  3N3Y A;  3GTL K;  4C45 A;  3OEP A;  2JA5 K;  2O5J A;  4G0W A;  4A3D K;  3I4N K;  3GTQ C;  3AD8 C;  2JA7 A;  5IP7 C;  4NOI A;  1VRQ C;  2E2I C;  3H3V L;  2VUM K;  4MEY A;  3T00 A;  4A3C C;  3HOU C;  4BXX C;  3H0G A;  3S16 K;  1Y1W K;  1EFW A;  4G0V A;  3HOV C;  3ADA C;  4A3J K;  4GT9 A;  4GFQ A;  4X6A K;  2GSU A;  2JA8 K;  1JQW A;  2FQO A;  3TTG A;  3HOZ C;  4AH6 A;  4XLP A;  2WB1 L;  5IP9 C;  2E2H A;  4PAB A;  4ZH4 A;  1TWA K;  3HXA A;  1WSV A;  3AD7 C;  5C4X K;  3S2H K;  2B63 C;  1ZQ1 C;  2PA8 D;  2R7Z K;  1O28 A;  1YX2 A;  1DCP A;  4XSX A;  5IYD C;  3S2D C;  2R93 K;  1XXC A;  5EGH A;  3HKZ L;  1I6H K;  5TMC A;  1O2F B;  3GTO C;  2GSO A;  3S1N C;  5M5Y K;  2ZUE A;  1TWC C;  1IBA A;  4A93 C;  4GTB A;  1Y1V K;  4YFK A;  2A6E A;  4A3F C;  1DD5 A;  4KMU A;  1R9T K;  3GTL A;  3T02 A;  1WIH A;  4C3J C;  2JA5 A;  3HOW K;  3G4C A;  2NVX K;  3S15 K;  2NVT K;  5FLM K;  5HL8 A;  2VUM A;  2YU9 C;  1HQM A;  3S1R C;  1Y1W A;  4LR2 A;  1JVI A;  4KM8 A;  3RZD C;  4Y52 K;  3S17 C;  3M4O C;  1IW7 A;  1ISE A;  5IOQ A;  4GTD A;  4LK0 A;  3GTG C;  4C2M C;  5IYB K;  4BBS C;  3LAP A;  1TWF K;  1TWG K;  4C3I K;  4GTF A;  1TWH C;  3I4M K;  1WOO A;  1C0A A;  1TWA A;  3PO2 K;  2V6U A;  2R92 C;  4WJ4 A;  1VLO A;  4FZB A;  2R7Z A;  1WSR A;  4KMH A;  2CW0 A;  2R93 A;  2GAG C;  2E2J C;  2EBB A;  3S1Q K;  1EI6 A;  4G7Z A;  1WQF A;  1WOS A;  2V6T A;  5IYC K;  4BY1 K;  3GTP K;  3LPX A;  2A6H A;  3HOY C;  3PO3 K;  1SFO K;  4KAS A;  2NVQ K;  1R9T A;  2PMZ L;  1O27 A;  2A69 A;  4P5A A;  2JA7 C;  2NVX A;  1O25 A;  2E2I K;  3S1M C;  2WAQ D;  3S14 C;  4A3L C;  3FKI K;  4BXX K;  4A3E C;  3CQZ K;  3Q3Q A;  4G0U A;  4A3I C;  5CHP A;  4PAA A;  3K7A K;  3H3V D;  3FHZ A;  3GTJ C;  1O29 A;  2NVY A;  1TWF A;  1PJ7 A;  1TWG A;  4GTA A;  4Y7N K;  1B4A A;  3HOZ K;  5IOS A;  1VGX A;  1YNN A;  1PJ6 A;  2FQT A;  1WOP A;  1WCM A;  1K83 C; 
#chains in the Genus database with same CATH homology
 3IPJ A;  3BP3 A;  1IBA A;  3BP8 C;  1O2F B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...