1J6XA

Crystal structure of helicobacter pylori luxs
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
151
structure length
151
Chain Sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
publication title A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
pubmed doi rcsb
source organism Helicobacter pylori
total genus 43
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j6xA00
1J6XA 1VJEA 1VGXA 2FQOA 1VH2A 4XCHA 5E68A 1IE0A 1INNA 2FQTA 1JOEA 1J6VA 1JVIA 1JQWA 1J98A 1YCLA 1J6WA
chains in the Genus database with same CATH superfamily
1I6VA 4A3IC 2E2HK 3HOZK 2R7ZA 3M3YK 3GTLK 2V6TA 2RH6A 4KC6A 2JA8C 4A3DC 1INNA 1F93A 2A6HA 3FHZA 1ZXOA 1TWCC 3A8KA 5IP9K 2CW0A 3S2HK 5FJ8K 2BE5A 4GTCA 2JA7C 3S1MC 4FZBA 4A3GC 1C0AA 1F7VA 5M5XK 3TFIA 3GEHA 4KASA 4Y7NK 2E2JC 2WAQD 1SMYA 2D6FC 1WOPA 2JA6K 1Y1VA 4Y52C 3MMLB 1BJTA 4A3CC 1O29A 1X31C 4JK1A 3K7AK 3FOEA 4C3IK 2GSUA 3HOZC 2V6UA 1XXCA 4WJ3M 1Y1WA 4YFXA 2YU9A 4BLBA 4GT9A 1WIHA 3G4AA 3GTOK 5IP9C 2PA8D 1IQ0A 3AQOA 4AYBD 4Q4ZA 4A3KK 2R93K 3S15K 2EBBA 1J6WA 1ZVUA 5IYCK 3TFJA 3RZDK 3HOYC 4BY7K 1TWGA 4QJVB 2PPBA 3FKIK 2PMZD 4J3NA 5JVOA 3QX3A 5CJ9A 3ADAC 4X6AC 4KB4A 3LPXA 4KMAA 4KMDA 1WQHA 2Y0SD 2B63K 1XXBA 3GTPK 3AD9C 4NOIA 4YG2A 1XZPA 3A8JA 2RGRA 5M5WK 2FQTA 4C3IC 4A3MC 1K83A 4P5AA 1WOSA 3TTGA 4G0WA 4QIWD 1TWAA 1VRQC 4A3KC 2R93C 1IBAA 4M1XA 1ZYRA 3S2DK 3S15C 5IYCC 3GDZA 2NVYC 2JH3A 4XSZA 4OIRA 3HOWK 2WB1L 4C2MK 4BBRK 5M5YK 4GZYA 1O2AA 3L4JA 1VJEA 1WOOA 3CQZA 5D4DA 4O2DA 1XPPA 4LLGA 2B63C 3GTPC 2XCQA 3N0BA 2NVQK 3SZZA 2GSOA 4C3HK 3HOXK 3HKZD 4BKWA 1YNJA 3BP8C 1EI6A 3GTJA 4MEXA 1IL2A 2XCOA 2PHCB 3N0CA 5C4JK 3H3VL 1XZQB 1B4AA 4G7ZA 3GTGA 2JA8K 3HOWC 1PJ6A 1TWHC 4BBRC 1TWCK 5IORA 4LK1A 1PJ7A 1WORA 2JA5A 2R92C 1GE9A 4XCHA 3ERED 4GTFA 3AH5A 3SZYA 1WQGA 5TJ3A 3A8IA 5FLMK 3GTKK 1J6XA 5M3FK 3LAJA 3I4NC 2R7ZC 1YX2A 3AD8C 5C4JC 5IOSA 3GTQA 3FOFA 1SFOA 3HOVC 4KMHA 3WODA 3HOYK 1TWGK 4GTEA 3S16C 5IYBC 3S14C 1WCMA 4X6AK 4A3BK 2GSNA 3S17C 1PJ5A 2FQOA 2GAGC 1O25A 5FLMC 3GTKC 4MEYA 4A3CK 2NVXA 3OREA 1WSRA 3H0GA 1R9TA 3GSIA 4A3MK 1Y1WC 2JA7A 5C4XK 3T01A 2YU9C 3OEPA 1VLOA 3TFHA 3PO2K 4KATA 3DXJA 3S0XA 3GTMA 2NVYK 1TWGC 1O28A 4BXXC 1VGXA 2PA8L 3BP3A 4A3BC 5M3MK 4G7OA 2E2HA 4GFQA 5C3EC 2GAHC 3N3YA 4RMFA 1IW7A 3GTLA 1JVIA 1RU0A 2VUMK 1O26A 1KQ4A 3GEEA 4KDDA 1K83C 1EK8A 5C4XC 3T00A 1O27A 4GTDA 1TWAC 1I3QK 1I50K 4KM8A 3GTJK 4LOWA 2A6EA 3PO2C 2JA6A 2V6SA 1F7UA 1TWHK 3Q3QA 5EGEA 4XLNA 2R92K 4KAWX 5IP7C 2VUMC 4OIQA 5IOQA 3GTOA 5HL8A 5IYDC 2R93A 4OIOA 5L46A 2ZUEA 1I3QC 1I50C 2CFAB 3GTJC 1WQFA 3I4NK 4C3JK 2R7ZK 3S1RK 3FKIA 1WSVA 3I4MC 4A3LC 2O5JA 3RZOK 1EQRA 4ILDA 3GTPA 2B63A 5TMCA 3HOVK 1DD5A 1I6HK 4G7HA 4WILA 4DDQA 3S16K 4KB2A 5IYBK 3HXAA 3S14K 1WCMK 1F9NA 1Y1VK 1XXAA 3S17K 3HOUC 3BUEA 3VA7A 4G0UA 1XZQA 2W7VA 1IS1A 1BGWA 4G0VA 4BY1C 4C3JC 1JQWA 3S1RC 1Y1WK 4P5BA 2YU9K 3RZOC 3GTQC 3S1QC 1SFOC 1TWFA 1O2BA 2NVTK 3GTMK 3L4KA 1I6HC 1USOA 1DCHA 4BBSC 4BXXK 2E2IA 4BLAA 1WCMC 1Y1VC 5C3EK 3AD7C 3M4OK 5CHPA 1J6VA 1J98A 2WAQL 2NVXC 1HQMA 1YNNA 3H0GC 5IOTA 1G51A 4A3EK 4LK0A 1TWCA 1R9TC 1K83K 3GEIA 4FM9A 2O5IA 4A3FC 1AB4A 1TWAK 3IPJA 2P5MA 4P9SA 3V4GA 1EH1A 2NVTC 3GTMC 1BS2A 3S1NK 3NUHA 3AQPA 3GTKA 2Y3PA 4AYBL 2ZUFA 3CQZK 2E2HC 3M4OC 5EGHA 3M3YC 1XZPB 3GTLC 5IP7K 2PMZL 4KN4A 5C44K 4YFNA 3GIRA 1ZBSA 4A3EC 3S2HC 2Y0SL 4KN7A 5IYDK 4YFKA 4Y7NC 1JOEA 4QJVA 1ZQ1C 4GTLA 4OIPA 3I4MK 3GTGK 4A3LK 2JA6C 3S1NC 1ISEA 4QIWL 2P8TA 3T02A 1YCLA 1USMA 4LQYA 3K7AC 4GTAA 3CQZC 2JA5K 4MQ9A 1BDFA 4WJ4A 3PO3K 1VH2A 5C44C 3GTOC 2WB1D 4PAAA 4C45A 2KWAA 3HOUK 2ZFZA 1IE0A 4LR2A 3RZDC 4OINA 4BY7C 2NVYA 4BY1K 1UV7A 3JSTA 3FKIC 1DCOA 3HKZL 3GTGC 2XCRB 4KMUA 4GTBA 3GTQK 5E68A 4XSXA 4PABA 3S1QK 1SFOK 4A93K 1TWFK 4ZH4A 1L0WA 2JA5C 2VUMA 5JFEA 4A3JK 2A69A 4AH6A 3H3VD 4BBSK 3PO3C 2E2IK 1I3QA 1I50A 2CFAA 3OPFA 4A3IK 1O24A 3LAPA 4LJZA 3S2DC 1O2FB 3G4CA 3CAGA 4KM9A 2NVXK 4A3DK 1EFWA 3H0GK 4C2MC 1R9TK 1TWHA 4KARA 2JA7K 1DCPA 1V5VA 3S1MK 4A3GK 2R92A 4A3FK 5TMFA 2NVQC 1HI9A 1TWFC 2E2JK 4A93C 3EQLA 4C3HC 3HOXC 4A3JC 4XLPA 1B4BA 4Y52K 2A68A 4Q5SA 2E2IC
chains in the Genus database with same CATH topology
1J6XA 1VJEA 1VGXA 2FQOA 1VH2A 4XCHA 5E68A 1IE0A 1INNA 2FQTA 1JOEA 1J6VA 1JVIA 1JQWA 1J98A 1YCLA 1J6WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J6X A;  1VJE A;  1VGX A;  2FQO A;  1VH2 A;  4XCH A;  5E68 A;  1IE0 A;  1INN A;  2FQT A;  1JOE A;  1J6V A;  1JVI A;  1JQW A;  1J98 A;  1YCL A;  1J6W A; 
#chains in the Genus database with same CATH topology
 1I6V A;  4A3I C;  2E2H K;  3HOZ K;  2R7Z A;  3M3Y K;  3GTL K;  2V6T A;  2RH6 A;  4KC6 A;  2JA8 C;  4A3D C;  1INN A;  1F93 A;  2A6H A;  3FHZ A;  1ZXO A;  1TWC C;  3A8K A;  5IP9 K;  2CW0 A;  3S2H K;  5FJ8 K;  2BE5 A;  4GTC A;  2JA7 C;  3S1M C;  4FZB A;  4A3G C;  1C0A A;  1F7V A;  5M5X K;  3TFI A;  3GEH A;  4KAS A;  4Y7N K;  2E2J C;  2WAQ D;  1SMY A;  2D6F C;  1WOP A;  2JA6 K;  1Y1V A;  4Y52 C;  3MML B;  1BJT A;  4A3C C;  1O29 A;  1X31 C;  4JK1 A;  3K7A K;  3FOE A;  4C3I K;  2GSU A;  3HOZ C;  2V6U A;  1XXC A;  4WJ3 M;  1Y1W A;  4YFX A;  2YU9 A;  4BLB A;  4GT9 A;  1WIH A;  3G4A A;  3GTO K;  5IP9 C;  2PA8 D;  1IQ0 A;  3AQO A;  4AYB D;  4Q4Z A;  4A3K K;  2R93 K;  3S15 K;  2EBB A;  1J6W A;  1ZVU A;  5IYC K;  3TFJ A;  3RZD K;  3HOY C;  4BY7 K;  1TWG A;  4QJV B;  2PPB A;  3FKI K;  2PMZ D;  4J3N A;  5JVO A;  3QX3 A;  5CJ9 A;  3ADA C;  4X6A C;  4KB4 A;  3LPX A;  4KMA A;  4KMD A;  1WQH A;  2Y0S D;  2B63 K;  1XXB A;  3GTP K;  3AD9 C;  4NOI A;  4YG2 A;  1XZP A;  3A8J A;  2RGR A;  5M5W K;  2FQT A;  4C3I C;  4A3M C;  1K83 A;  4P5A A;  1WOS A;  3TTG A;  4G0W A;  4QIW D;  1TWA A;  1VRQ C;  4A3K C;  2R93 C;  1IBA A;  4M1X A;  1ZYR A;  3S2D K;  3S15 C;  5IYC C;  3GDZ A;  2NVY C;  2JH3 A;  4XSZ A;  4OIR A;  3HOW K;  2WB1 L;  4C2M K;  4BBR K;  5M5Y K;  4GZY A;  1O2A A;  3L4J A;  1VJE A;  1WOO A;  3CQZ A;  5D4D A;  4O2D A;  1XPP A;  4LLG A;  2B63 C;  3GTP C;  2XCQ A;  3N0B A;  2NVQ K;  3SZZ A;  2GSO A;  4C3H K;  3HOX K;  3HKZ D;  4BKW A;  1YNJ A;  3BP8 C;  1EI6 A;  3GTJ A;  4MEX A;  1IL2 A;  2XCO A;  2PHC B;  3N0C A;  5C4J K;  3H3V L;  1XZQ B;  1B4A A;  4G7Z A;  3GTG A;  2JA8 K;  3HOW C;  1PJ6 A;  1TWH C;  4BBR C;  1TWC K;  5IOR A;  4LK1 A;  1PJ7 A;  1WOR A;  2JA5 A;  2R92 C;  1GE9 A;  4XCH A;  3ERE D;  4GTF A;  3AH5 A;  3SZY A;  1WQG A;  5TJ3 A;  3A8I A;  5FLM K;  3GTK K;  1J6X A;  5M3F K;  3LAJ A;  3I4N C;  2R7Z C;  1YX2 A;  3AD8 C;  5C4J C;  5IOS A;  3GTQ A;  3FOF A;  1SFO A;  3HOV C;  4KMH A;  3WOD A;  3HOY K;  1TWG K;  4GTE A;  3S16 C;  5IYB C;  3S14 C;  1WCM A;  4X6A K;  4A3B K;  2GSN A;  3S17 C;  1PJ5 A;  2FQO A;  2GAG C;  1O25 A;  5FLM C;  3GTK C;  4MEY A;  4A3C K;  2NVX A;  3ORE A;  1WSR A;  3H0G A;  1R9T A;  3GSI A;  4A3M K;  1Y1W C;  2JA7 A;  5C4X K;  3T01 A;  2YU9 C;  3OEP A;  1VLO A;  3TFH A;  3PO2 K;  4KAT A;  3DXJ A;  3S0X A;  3GTM A;  2NVY K;  1TWG C;  1O28 A;  4BXX C;  1VGX A;  2PA8 L;  3BP3 A;  4A3B C;  5M3M K;  4G7O A;  2E2H A;  4GFQ A;  5C3E C;  2GAH C;  3N3Y A;  4RMF A;  1IW7 A;  3GTL A;  1JVI A;  1RU0 A;  2VUM K;  1O26 A;  1KQ4 A;  3GEE A;  4KDD A;  1K83 C;  1EK8 A;  5C4X C;  3T00 A;  1O27 A;  4GTD A;  1TWA C;  1I3Q K;  1I50 K;  4KM8 A;  3GTJ K;  4LOW A;  2A6E A;  3PO2 C;  2JA6 A;  2V6S A;  1F7U A;  1TWH K;  3Q3Q A;  5EGE A;  4XLN A;  2R92 K;  4KAW X;  5IP7 C;  2VUM C;  4OIQ A;  5IOQ A;  3GTO A;  5HL8 A;  5IYD C;  2R93 A;  4OIO A;  5L46 A;  2ZUE A;  1I3Q C;  1I50 C;  2CFA B;  3GTJ C;  1WQF A;  3I4N K;  4C3J K;  2R7Z K;  3S1R K;  3FKI A;  1WSV A;  3I4M C;  4A3L C;  2O5J A;  3RZO K;  1EQR A;  4ILD A;  3GTP A;  2B63 A;  5TMC A;  3HOV K;  1DD5 A;  1I6H K;  4G7H A;  4WIL A;  4DDQ A;  3S16 K;  4KB2 A;  5IYB K;  3HXA A;  3S14 K;  1WCM K;  1F9N A;  1Y1V K;  1XXA A;  3S17 K;  3HOU C;  3BUE A;  3VA7 A;  4G0U A;  1XZQ A;  2W7V A;  1IS1 A;  1BGW A;  4G0V A;  4BY1 C;  4C3J C;  1JQW A;  3S1R C;  1Y1W K;  4P5B A;  2YU9 K;  3RZO C;  3GTQ C;  3S1Q C;  1SFO C;  1TWF A;  1O2B A;  2NVT K;  3GTM K;  3L4K A;  1I6H C;  1USO A;  1DCH A;  4BBS C;  4BXX K;  2E2I A;  4BLA A;  1WCM C;  1Y1V C;  5C3E K;  3AD7 C;  3M4O K;  5CHP A;  1J6V A;  1J98 A;  2WAQ L;  2NVX C;  1HQM A;  1YNN A;  3H0G C;  5IOT A;  1G51 A;  4A3E K;  4LK0 A;  1TWC A;  1R9T C;  1K83 K;  3GEI A;  4FM9 A;  2O5I A;  4A3F C;  1AB4 A;  1TWA K;  3IPJ A;  2P5M A;  4P9S A;  3V4G A;  1EH1 A;  2NVT C;  3GTM C;  1BS2 A;  3S1N K;  3NUH A;  3AQP A;  3GTK A;  2Y3P A;  4AYB L;  2ZUF A;  3CQZ K;  2E2H C;  3M4O C;  5EGH A;  3M3Y C;  1XZP B;  3GTL C;  5IP7 K;  2PMZ L;  4KN4 A;  5C44 K;  4YFN A;  3GIR A;  1ZBS A;  4A3E C;  3S2H C;  2Y0S L;  4KN7 A;  5IYD K;  4YFK A;  4Y7N C;  1JOE A;  4QJV A;  1ZQ1 C;  4GTL A;  4OIP A;  3I4M K;  3GTG K;  4A3L K;  2JA6 C;  3S1N C;  1ISE A;  4QIW L;  2P8T A;  3T02 A;  1YCL A;  1USM A;  4LQY A;  3K7A C;  4GTA A;  3CQZ C;  2JA5 K;  4MQ9 A;  1BDF A;  4WJ4 A;  3PO3 K;  1VH2 A;  5C44 C;  3GTO C;  2WB1 D;  4PAA A;  4C45 A;  2KWA A;  3HOU K;  2ZFZ A;  1IE0 A;  4LR2 A;  3RZD C;  4OIN A;  4BY7 C;  2NVY A;  4BY1 K;  1UV7 A;  3JST A;  3FKI C;  1DCO A;  3HKZ L;  3GTG C;  2XCR B;  4KMU A;  4GTB A;  3GTQ K;  5E68 A;  4XSX A;  4PAB A;  3S1Q K;  1SFO K;  4A93 K;  1TWF K;  4ZH4 A;  1L0W A;  2JA5 C;  2VUM A;  5JFE A;  4A3J K;  2A69 A;  4AH6 A;  3H3V D;  4BBS K;  3PO3 C;  2E2I K;  1I3Q A;  1I50 A;  2CFA A;  3OPF A;  4A3I K;  1O24 A;  3LAP A;  4LJZ A;  3S2D C;  1O2F B;  3G4C A;  3CAG A;  4KM9 A;  2NVX K;  4A3D K;  1EFW A;  3H0G K;  4C2M C;  1R9T K;  1TWH A;  4KAR A;  2JA7 K;  1DCP A;  1V5V A;  3S1M K;  4A3G K;  2R92 A;  4A3F K;  5TMF A;  2NVQ C;  1HI9 A;  1TWF C;  2E2J K;  4A93 C;  3EQL A;  4C3H C;  3HOX C;  4A3J C;  4XLP A;  1B4B A;  4Y52 K;  2A68 A;  4Q5S A;  2E2I C; 
#chains in the Genus database with same CATH homology
 1J6X A;  1VJE A;  1VGX A;  2FQO A;  1VH2 A;  4XCH A;  5E68 A;  1IE0 A;  1INN A;  2FQT A;  1JOE A;  1J6V A;  1JVI A;  1JQW A;  1J98 A;  1YCL A;  1J6W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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