3TTGA

Crystal structure of putative aminomethyltransferase from leptospirillum rubarum
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
340
structure length
337
Chain Sequence
NLYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRMLKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLLPDAQLVRVHSLPFV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative aminomethyltransferase
publication title Crystal structure of putative aminomethyltransferase from Leptospirillum rubarum
rcsb
source organism Leptospirillum rubarum
molecule tags Transferase
total genus 95
structure length 337
sequence length 340
ec nomenclature
pdb deposition date 2011-09-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 3ttgA00
2GAGC 1WOSA 1WOPA 3A8JA 3GEHA 1WORA 3GIRA 3TFHA 5L46A 3TFIA 1X31C 3A8KA 3AD8C 1V5VA 2GAHC 1XZQA 3AD7C 4PAAA 1PJ6A 1PJ5A 4P9SA 3A8IA 3GEIA 1YX2A 3ADAC 1XZPA 3TFJA 4PABA 3TTGA 3GSIA 3AD9C 1WSRA 3GEEA 1XZQB 1VLOA 1PJ7A 1VRQC 1WSVA 1XZPB 1WOOA
chains in the Genus database with same CATH superfamily
3GTQK 1TWCA 1I6HC 1TWHA 1WQFA 4A3KC 2R92A 4GTAA 4G0UA 3GTMC 3GTMK 1EFWA 1Y1WK 1IQ0A 5JVOA 3WODA 4BBSK 3FHZA 4A3FK 4BBRK 4G0VA 1DCHA 4A3BC 2XCQA 5IYBC 4GZYA 1SFOK 3FKIC 4WILA 1WOSA 1USOA 3DXJA 3S1NC 1IW7A 1WQHA 3N0BA 2JA5A 3OEPA 1GE9A 4AYBD 2XCOA 4BXXK 1PJ6A 2E2HA 1RU0A 3Q3QA 4Y52K 4KN7A 4C3IC 4C3IK 4OIRA 2XCRB 3GEEA 3S14C 4QJVA 5HL8A 1VRQC 3AQOA 4ZH4A 3SZYA 1EQRA 4KATA 1TWAK 1TWAC 3LPXA 4XLNA 3M4OC 3M4OK 4Q4ZA 4A3LK 4A3LC 4BLAA 3K7AC 3K7AK 3HOXC 2V6SA 1I3QA 2BE5A 3GTKA 4A3IC 1WSRA 1XXAA 1JVIA 1VJEA 4A3JC 2Y3PA 1IL2A 3S16K 2B63A 3RZDK 2R93C 2R93K 1EH1A 4G0WA 1I50A 3MMLB 3PO3K 4KB2A 2FQTA 4A3GC 4QJVB 2YU9K 3N0CA 2R7ZC 2R7ZK 1XPPA 3H3VL 1Y1VC 1Y1VK 1L0WA 4GTLA 3GEIA 2ZUEA 3S2HK 3S2HC 4A3MK 3QX3A 3GSIA 4KMHA 2GSUA 4J3NA 3S15K 4KM8A 1C0AA 1IS1A 1O26A 3M3YK 1TWGA 1TWHK 4P5BA 2R92K 3HKZL 4KASA 4RMFA 3AD8C 4KN4A 3T02A 4Y7NC 4Y7NK 2PMZL 3HOWC 3HOVK 1XZQA 3HXAA 4ILDA 3S1RC 4OIQA 3S2DC 4XSZA 4MEYA 1R9TK 1F93A 1R9TC 4PABA 5IP7C 5IP7K 1K83A 5C4JK 4LQYA 4C3JK 1J6WA 1J98A 2O5JA 2NVQC 2NVQK 2A69A 1BGWA 3NUHA 2CFAA 4LOWA 4WJ4A 1WSVA 3N3YA 2JA6A 2JA7C 4BY7C 1WOPA 3EQLA 1HQMA 4LLGA 2JA5K 4KMDA 3GTQC 4NOIA 1YNJA 3GTGA 3SZZA 2E2HC 2E2HK 1IBAA 1Y1WC 1ZXOA 4BBSC 3H0GC 3H0GK 4A3FC 3FOFA 1WCMA 4KMAA 3LAPA 4BBRC 3PO2K 1XZQB 4YG2A 2ZFZA 1HI9A 1TWFA 4OIPA 3ERED 1SFOC 4QIWD 2E2IA 3GIRA 1B4AA 2CFAB 1X31C 5C3EK 3HOZK 4FZBA 4BXXC 1I3QK 5EGEA 4C3HK 3GTLA 3GTOA 5D4DA 3GTKK 2NVYA 4Y52C 2CW0A 2Y0SL 2B63C 2B63K 1PJ7A 4KM9A 3AH5A 1YNNA 2NVTK 2NVTC 2O5IA 3G4AA 5CHPA 2PHCB 3A8JA 3S1MK 3S1MC 1IE0A 1O28A 4GTBA 3TFIA 3OPFA 5IP9K 2D6FC 5IOQA 1F7UA 1O24A 4PAAA 1PJ5A 4A3DC 4A3DK 3GTJC 3GTJK 4C45A 3G4CA 2P8TA 2JA8K 4A3EK 3HOUK 1ZYRA 4GTFA 2A68A 3S16C 3RZDC 1ZQ1C 3FKIA 1BJTA 3PO3C 3T01A 2YU9C 4LK1A 4BY1K 4GT9A 3OREA 4YFNA 1J6VA 1J6XA 3V4GA 4C2MK 4OIOA 1K83K 2WAQL 3CQZK 3CQZC 4A3MC 3AD9C 2NVXC 2NVXK 2E2JC 3S15C 1EI6A 1TWCK 1TWCC 3M3YC 1TWAA 5M3MK 1TWHC 5IORA 2R92C 2FQOA 4KB4A 3GTGK 3S0XA 4M1XA 3LAJA 3S17K 1V5VA 4LR2A 2JH3A 3I4MK 3AD7C 3HOVC 2V6TA 4BLBA 2WB1L 1WCMK 1WCMC 3A8IA 5JFEA 5M5XK 3FOEA 3I4NK 5C4JC 3H3VD 1F9NA 4C3JC 4G7ZA 1TWFK 1ISEA 1TWFC 4X6AK 1G51A 2R93A 2P5MA 5FJ8K 2JA5C 5L46A 4Q5SA 3A8KA 4KC6A 2R7ZA 4FM9A 3GTLK 2W7VA 1JOEA 3GTOK 3RZOC 1Y1VA 4XLPA 3RZOK 4A3CK 4WJ3M 4P9SA 1YX2A 3ADAC 3HKZD 3TTGA 2PA8D 3IPJA 3HOYK 5TMFA 3GTPA 3JSTA 4GFQA 2PMZD 3PO2C 3AQPA 4AYBL 5TJ3A 2ZUFA 1KQ4A 1WOOA 2V6UA 5C4XK 5C4XC 1YCLA 4KAWX 4XCHA 1I6HK 4A3KK 1JQWA 3L4KA 1BS2A 5E68A 4GTCA 5C3EC 2GAHC 3HOZC 4YFXA 5IOTA 1I3QC 4C3HC 5M5WK 1R9TA 3BP8C 3S1QC 1O2BA 3GTKC 4A3BK 4JK1A 3S1QK 5IYBK 1O29A 1WQGA 1VH2A 3BP3A 2VUMA 1EK8A 3FKIK 1I50K 1I50C 2JA7A 3S1NK 1WORA 1XXBA 3TFHA 3GTQA 4G7HA 1I6VA 1O2AA 5IP9C 3GTMA 5IOSA 1O25A 1Y1WA 1AB4A 5IYDC 5IYDK 3H0GA 2RH6A 1XXCA 3TFJA 4MEXA 3S14K 4P5AA 3CAGA 2RGRA 2JA8C 3VA7A 4A3EC 3HOUC 2GSOA 5FLMK 2A6EA 5FLMC 3L4JA 1TWGK 1TWGC 1SFOA 2GAGC 1F7VA 1SMYA 4GTDA 2Y0SD 3HOXK 2EBBA 2PPBA 4BY1C 5CJ9A 2KWAA 2A6HA 4C2MC 1K83C 4BKWA 4A3IK 5TMCA 4AH6A 1DD5A 4G7OA 4A3JK 1B4BA 2JA6K 2JA6C 1O27A 1O2FB 3GEHA 4A3GK 5EGHA 4KARA 1ZBSA 3GTGC 4YFKA 5M3FK 3S17C 1DCPA 4LK0A 4LJZA 1ZVUA 4A93K 4A93C 1INNA 4KMUA 3I4MC 1XZPA 3GTJA 3GTPC 3GTPK 4KDDA 1BDFA 5C44K 5C44C 3I4NC 4XSXA 4GTEA 5M5YK 1DCOA 3GDZA 4X6AC 5IYCK 5IYCC 2E2IC 2E2IK 1VGXA 2WAQD 3BUEA 1WIHA 2PA8L 4OINA 2YU9A 3HOWK 3S1RK 3GTLC 3S2DK 3GTOC 4A3CC 3T00A 4DDQA 4QIWL 2GSNA 4O2DA 3CQZA 2NVYK 2NVYC 4MQ9A 3HOYC 2VUMK 2VUMC 2NVXA 1UV7A 1VLOA 2WB1D 1XZPB 2JA7K 2E2JK 1USMA 4BY7K
chains in the Genus database with same CATH topology
2GAGC 1WOSA 1WOPA 3A8JA 3GEHA 1WORA 3GIRA 3TFHA 5L46A 3TFIA 1X31C 3A8KA 3AD8C 1V5VA 2GAHC 1XZQA 3AD7C 4PAAA 1PJ6A 1PJ5A 4P9SA 3A8IA 3GEIA 1YX2A 3ADAC 1XZPA 3TFJA 4PABA 3TTGA 3GSIA 3AD9C 1WSRA 3GEEA 1XZQB 1VLOA 1PJ7A 1VRQC 1WSVA 1XZPB 1WOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GAG C;  1WOS A;  1WOP A;  3A8J A;  3GEH A;  1WOR A;  3GIR A;  3TFH A;  5L46 A;  3TFI A;  1X31 C;  3A8K A;  3AD8 C;  1V5V A;  2GAH C;  1XZQ A;  3AD7 C;  4PAA A;  1PJ6 A;  1PJ5 A;  4P9S A;  3A8I A;  3GEI A;  1YX2 A;  3ADA C;  1XZP A;  3TFJ A;  4PAB A;  3TTG A;  3GSI A;  3AD9 C;  1WSR A;  3GEE A;  1XZQ B;  1VLO A;  1PJ7 A;  1VRQ C;  1WSV A;  1XZP B;  1WOO A; 
#chains in the Genus database with same CATH topology
 3GTQ K;  1TWC A;  1I6H C;  1TWH A;  1WQF A;  4A3K C;  2R92 A;  4GTA A;  4G0U A;  3GTM C;  3GTM K;  1EFW A;  1Y1W K;  1IQ0 A;  5JVO A;  3WOD A;  4BBS K;  3FHZ A;  4A3F K;  4BBR K;  4G0V A;  1DCH A;  4A3B C;  2XCQ A;  5IYB C;  4GZY A;  1SFO K;  3FKI C;  4WIL A;  1WOS A;  1USO A;  3DXJ A;  3S1N C;  1IW7 A;  1WQH A;  3N0B A;  2JA5 A;  3OEP A;  1GE9 A;  4AYB D;  2XCO A;  4BXX K;  1PJ6 A;  2E2H A;  1RU0 A;  3Q3Q A;  4Y52 K;  4KN7 A;  4C3I C;  4C3I K;  4OIR A;  2XCR B;  3GEE A;  3S14 C;  4QJV A;  5HL8 A;  1VRQ C;  3AQO A;  4ZH4 A;  3SZY A;  1EQR A;  4KAT A;  1TWA K;  1TWA C;  3LPX A;  4XLN A;  3M4O C;  3M4O K;  4Q4Z A;  4A3L K;  4A3L C;  4BLA A;  3K7A C;  3K7A K;  3HOX C;  2V6S A;  1I3Q A;  2BE5 A;  3GTK A;  4A3I C;  1WSR A;  1XXA A;  1JVI A;  1VJE A;  4A3J C;  2Y3P A;  1IL2 A;  3S16 K;  2B63 A;  3RZD K;  2R93 C;  2R93 K;  1EH1 A;  4G0W A;  1I50 A;  3MML B;  3PO3 K;  4KB2 A;  2FQT A;  4A3G C;  4QJV B;  2YU9 K;  3N0C A;  2R7Z C;  2R7Z K;  1XPP A;  3H3V L;  1Y1V C;  1Y1V K;  1L0W A;  4GTL A;  3GEI A;  2ZUE A;  3S2H K;  3S2H C;  4A3M K;  3QX3 A;  3GSI A;  4KMH A;  2GSU A;  4J3N A;  3S15 K;  4KM8 A;  1C0A A;  1IS1 A;  1O26 A;  3M3Y K;  1TWG A;  1TWH K;  4P5B A;  2R92 K;  3HKZ L;  4KAS A;  4RMF A;  3AD8 C;  4KN4 A;  3T02 A;  4Y7N C;  4Y7N K;  2PMZ L;  3HOW C;  3HOV K;  1XZQ A;  3HXA A;  4ILD A;  3S1R C;  4OIQ A;  3S2D C;  4XSZ A;  4MEY A;  1R9T K;  1F93 A;  1R9T C;  4PAB A;  5IP7 C;  5IP7 K;  1K83 A;  5C4J K;  4LQY A;  4C3J K;  1J6W A;  1J98 A;  2O5J A;  2NVQ C;  2NVQ K;  2A69 A;  1BGW A;  3NUH A;  2CFA A;  4LOW A;  4WJ4 A;  1WSV A;  3N3Y A;  2JA6 A;  2JA7 C;  4BY7 C;  1WOP A;  3EQL A;  1HQM A;  4LLG A;  2JA5 K;  4KMD A;  3GTQ C;  4NOI A;  1YNJ A;  3GTG A;  3SZZ A;  2E2H C;  2E2H K;  1IBA A;  1Y1W C;  1ZXO A;  4BBS C;  3H0G C;  3H0G K;  4A3F C;  3FOF A;  1WCM A;  4KMA A;  3LAP A;  4BBR C;  3PO2 K;  1XZQ B;  4YG2 A;  2ZFZ A;  1HI9 A;  1TWF A;  4OIP A;  3ERE D;  1SFO C;  4QIW D;  2E2I A;  3GIR A;  1B4A A;  2CFA B;  1X31 C;  5C3E K;  3HOZ K;  4FZB A;  4BXX C;  1I3Q K;  5EGE A;  4C3H K;  3GTL A;  3GTO A;  5D4D A;  3GTK K;  2NVY A;  4Y52 C;  2CW0 A;  2Y0S L;  2B63 C;  2B63 K;  1PJ7 A;  4KM9 A;  3AH5 A;  1YNN A;  2NVT K;  2NVT C;  2O5I A;  3G4A A;  5CHP A;  2PHC B;  3A8J A;  3S1M K;  3S1M C;  1IE0 A;  1O28 A;  4GTB A;  3TFI A;  3OPF A;  5IP9 K;  2D6F C;  5IOQ A;  1F7U A;  1O24 A;  4PAA A;  1PJ5 A;  4A3D C;  4A3D K;  3GTJ C;  3GTJ K;  4C45 A;  3G4C A;  2P8T A;  2JA8 K;  4A3E K;  3HOU K;  1ZYR A;  4GTF A;  2A68 A;  3S16 C;  3RZD C;  1ZQ1 C;  3FKI A;  1BJT A;  3PO3 C;  3T01 A;  2YU9 C;  4LK1 A;  4BY1 K;  4GT9 A;  3ORE A;  4YFN A;  1J6V A;  1J6X A;  3V4G A;  4C2M K;  4OIO A;  1K83 K;  2WAQ L;  3CQZ K;  3CQZ C;  4A3M C;  3AD9 C;  2NVX C;  2NVX K;  2E2J C;  3S15 C;  1EI6 A;  1TWC K;  1TWC C;  3M3Y C;  1TWA A;  5M3M K;  1TWH C;  5IOR A;  2R92 C;  2FQO A;  4KB4 A;  3GTG K;  3S0X A;  4M1X A;  3LAJ A;  3S17 K;  1V5V A;  4LR2 A;  2JH3 A;  3I4M K;  3AD7 C;  3HOV C;  2V6T A;  4BLB A;  2WB1 L;  1WCM K;  1WCM C;  3A8I A;  5JFE A;  5M5X K;  3FOE A;  3I4N K;  5C4J C;  3H3V D;  1F9N A;  4C3J C;  4G7Z A;  1TWF K;  1ISE A;  1TWF C;  4X6A K;  1G51 A;  2R93 A;  2P5M A;  5FJ8 K;  2JA5 C;  5L46 A;  4Q5S A;  3A8K A;  4KC6 A;  2R7Z A;  4FM9 A;  3GTL K;  2W7V A;  1JOE A;  3GTO K;  3RZO C;  1Y1V A;  4XLP A;  3RZO K;  4A3C K;  4WJ3 M;  4P9S A;  1YX2 A;  3ADA C;  3HKZ D;  3TTG A;  2PA8 D;  3IPJ A;  3HOY K;  5TMF A;  3GTP A;  3JST A;  4GFQ A;  2PMZ D;  3PO2 C;  3AQP A;  4AYB L;  5TJ3 A;  2ZUF A;  1KQ4 A;  1WOO A;  2V6U A;  5C4X K;  5C4X C;  1YCL A;  4KAW X;  4XCH A;  1I6H K;  4A3K K;  1JQW A;  3L4K A;  1BS2 A;  5E68 A;  4GTC A;  5C3E C;  2GAH C;  3HOZ C;  4YFX A;  5IOT A;  1I3Q C;  4C3H C;  5M5W K;  1R9T A;  3BP8 C;  3S1Q C;  1O2B A;  3GTK C;  4A3B K;  4JK1 A;  3S1Q K;  5IYB K;  1O29 A;  1WQG A;  1VH2 A;  3BP3 A;  2VUM A;  1EK8 A;  3FKI K;  1I50 K;  1I50 C;  2JA7 A;  3S1N K;  1WOR A;  1XXB A;  3TFH A;  3GTQ A;  4G7H A;  1I6V A;  1O2A A;  5IP9 C;  3GTM A;  5IOS A;  1O25 A;  1Y1W A;  1AB4 A;  5IYD C;  5IYD K;  3H0G A;  2RH6 A;  1XXC A;  3TFJ A;  4MEX A;  3S14 K;  4P5A A;  3CAG A;  2RGR A;  2JA8 C;  3VA7 A;  4A3E C;  3HOU C;  2GSO A;  5FLM K;  2A6E A;  5FLM C;  3L4J A;  1TWG K;  1TWG C;  1SFO A;  2GAG C;  1F7V A;  1SMY A;  4GTD A;  2Y0S D;  3HOX K;  2EBB A;  2PPB A;  4BY1 C;  5CJ9 A;  2KWA A;  2A6H A;  4C2M C;  1K83 C;  4BKW A;  4A3I K;  5TMC A;  4AH6 A;  1DD5 A;  4G7O A;  4A3J K;  1B4B A;  2JA6 K;  2JA6 C;  1O27 A;  1O2F B;  3GEH A;  4A3G K;  5EGH A;  4KAR A;  1ZBS A;  3GTG C;  4YFK A;  5M3F K;  3S17 C;  1DCP A;  4LK0 A;  4LJZ A;  1ZVU A;  4A93 K;  4A93 C;  1INN A;  4KMU A;  3I4M C;  1XZP A;  3GTJ A;  3GTP C;  3GTP K;  4KDD A;  1BDF A;  5C44 K;  5C44 C;  3I4N C;  4XSX A;  4GTE A;  5M5Y K;  1DCO A;  3GDZ A;  4X6A C;  5IYC K;  5IYC C;  2E2I C;  2E2I K;  1VGX A;  2WAQ D;  3BUE A;  1WIH A;  2PA8 L;  4OIN A;  2YU9 A;  3HOW K;  3S1R K;  3GTL C;  3S2D K;  3GTO C;  4A3C C;  3T00 A;  4DDQ A;  4QIW L;  2GSN A;  4O2D A;  3CQZ A;  2NVY K;  2NVY C;  4MQ9 A;  3HOY C;  2VUM K;  2VUM C;  2NVX A;  1UV7 A;  1VLO A;  2WB1 D;  1XZP B;  2JA7 K;  2E2J K;  1USM A;  4BY7 K; 
#chains in the Genus database with same CATH homology
 2GAG C;  1WOS A;  1WOP A;  3A8J A;  3GEH A;  1WOR A;  3GIR A;  3TFH A;  5L46 A;  3TFI A;  1X31 C;  3A8K A;  3AD8 C;  1V5V A;  2GAH C;  1XZQ A;  3AD7 C;  4PAA A;  1PJ6 A;  1PJ5 A;  4P9S A;  3A8I A;  3GEI A;  1YX2 A;  3ADA C;  1XZP A;  3TFJ A;  4PAB A;  3TTG A;  3GSI A;  3AD9 C;  1WSR A;  3GEE A;  1XZQ B;  1VLO A;  1PJ7 A;  1VRQ C;  1WSV A;  1XZP B;  1WOO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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