3TTGA

Crystal structure of putative aminomethyltransferase from leptospirillum rubarum
Total Genus 95
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
340
structure length
337
Chain Sequence
NLYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRMLKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFSENGTELLLPDAQLVRVHSLPFV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Leptospirillum rubarum
publication title Crystal structure of putative aminomethyltransferase from Leptospirillum rubarum
rcsb
molecule keywords Putative aminomethyltransferase
total genus 95
structure length 337
sequence length 340
ec nomenclature
pdb deposition date 2011-09-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 3ttgA00
3TFHA 1PJ7A 1VRQC 3A8IA 3AD7C 1XZPB 1YX2A 2GAHC 4PABA 1XZPA 3GEHA 3AD8C 3AD9C 3TFJA 3TTGA 1X31C 3GEEA 3A8KA 3GEIA 1WORA 1WOOA 4P9SA 1WOSA 3A8JA 5L46A 1PJ6A 1V5VA 4PAAA 1WOPA 3GIRA 1WSRA 1VLOA 3GSIA 1WSVA 3TFIA 3ADAC 1XZQB 1PJ5A 1XZQA 2GAGC
chains in the Genus database with same CATH superfamily
1PJ7A 4BBRC 2JA7K 2WB1D 1YX2A 4A3BK 3BP3A 5IYDC 1ISEA 3S2HC 2VUMC 1VH2A 4KB4A 2EBBA 2E2IA 1WSRA 1F7UA 2A6HA 2V6UA 3T01A 1R9TA 2JA6C 3GTMC 4A3CK 4KM8A 2E2IK 3GTPK 3EQLA 5IOQA 3L4KA 4C3IK 1TWHC 2JA5K 4RMFA 3GTGA 1O28A 1XXBA 1R9TK 3AQOA 1TWFK 3TFJA 3BP8C 3S15C 1EI6A 1O29A 3GTQA 1ZXOA 2R93A 1TWAK 1WORA 4GZYA 2NVTC 3M3YC 3G4AA 2FQTA 5L46A 3GTJC 4A3KC 3GTQK 2R7ZK 3K7AK 3S17C 4AH6A 3FHZA 1WSVA 3S1QK 3RZDC 4A3FC 3PO2K 1USMA 1C0AA 3TFHA 2ZUFA 1IW7A 4G0VA 2D6FC 1I6HC 3CAGA 5IYBK 4BY7C 4LLGA 4ILDA 4C3JC 1K83A 2Y0SL 4A3LC 1AB4A 4QJVA 1IE0A 1YCLA 1ZVUA 5IORA 3S16C 1K83K 5IYCK 3S2DK 2W7VA 2O5JA 4A3JC 1V5VA 3RZOC 1UV7A 1DCOA 2GSNA 3BUEA 1EQRA 2YU9C 4BLAA 4X6AK 1TWGA 5HL8A 2JA6A 4OINA 2XCRB 4BBSC 1DD5A 1IQ0A 4G7ZA 3T00A 3HOZK 3I4MK 4BXXC 1B4AA 3Q3QA 4YFKA 1BJTA 3DXJA 4J3NA 1PJ6A 3GTJA 4GTAA 4Q4ZA 1INNA 4BY1K 1J6WA 2JA8K 1IBAA 4A3DK 3FOEA 4PABA 4OIQA 2JH3A 2Y0SD 5IP9K 1Y1WC 1EH1A 1BDFA 3CQZC 2NVQC 4A3CC 2E2JC 4A3GK 3GTPC 1JVIA 4C3IC 5CJ9A 2R92K 3S1NK 2E2HC 1IL2A 4KASA 5IOTA 2NVYA 4C3HK 1ZQ1C 2PA8D 3H0GA 3S1RC 4KMHA 3N0BA 2YU9A 2B63K 4C2MK 3GTLK 3M4OK 5C4XK 1Y1VK 1TWCA 2R7ZC 1XXCA 3N3YA 3GTKC 2NVXK 1JOEA 3HOVK 5TMCA 5C3EK 4YG2A 3AH5A 4MEYA 4ZH4A 4A3IK 3HOWK 3S1MK 4KARA 4QJVB 4LJZA 4P5AA 1TWCK 2PHCB 4XCHA 3PO3K 3SZYA 2CFAB 1VGXA 1EK8A 4KATA 3HOUC 4MQ9A 1G51A 1XZQA 1I3QC 3A8IA 3GEHA 4XLPA 5IYCC 1KQ4A 4XSZA 1SFOC 1X31C 4KN4A 1EFWA 1WQFA 2FQOA 1ZBSA 4X6AC 3S14C 3WODA 3GTGK 1WCMA 3HOYC 4KMDA 3FKIC 3GTOA 3FOFA 4KAWX 2R93K 2E2HA 5C4JK 3I4NK 1O2BA 4JK1A 4OIPA 4QIWD 1O2FB 3GTOK 4WJ3M 3NUHA 3V4GA 4GTFA 1O2AA 4P5BA 5M5WK 2A69A 4GTCA 4GTDA 5FLMC 5C44K 1I50C 1YNNA 3HKZL 3HOXK 2JA8C 4A3EK 4A3DC 2VUMA 2CFAA 5IYDK 3GSIA 1VLOA 4G7OA 3S2HK 2XCQA 4FZBA 1I3QA 5IOSA 3HXAA 3GTMA 1USOA 4A3GC 3N0CA 1TWHA 2PA8L 2R92C 1TWGK 4GTBA 4Y52C 2JA6K 3GTMK 3OEPA 4KB2A 1TWHK 4O2DA 3MMLB 4LK1A 5FJ8K 2JA7C 3S15K 3H3VL 4FM9A 4A3BC 3VA7A 1XZQB 2NVXC 3HOVC 5C3EC 2Y3PA 4YFXA 2NVTK 3S1MC 3GTJK 4A3KK 3T02A 1F93A 4C45A 1XZPA 3HKZD 1J98A 3RZDK 4A3FK 4Y7NK 3AQPA 5EGHA 1DCPA 1O24A 1WIHA 3GEEA 4DDQA 4MEXA 1IS1A 4KDDA 1RU0A 4A93K 1I6HK 2WAQL 3LAJA 2E2IC 1HI9A 4GT9A 4BY7K 4C3JK 2JA5C 1JQWA 4LQYA 1R9TC 4A3LK 1TWFC 5M3FK 4WILA 3S16K 5E68A 1O26A 3AD7C 4A3JK 3RZOK 4GFQA 2NVYK 1TWAC 3H0GK 2YU9K 4QIWL 3GTQC 2PPBA 4KM9A 3G4CA 3K7AC 5IP7K 3JSTA 4XLNA 2KWAA 3H3VD 3S1QC 2PMZL 3PO2C 2ZFZA 1WOSA 4BBSK 2V6SA 3GIRA 3ADAC 2A6EA 5IYBC 1F7VA 4A3MK 2ZUEA 5C44C 2P8TA 3HOXC 4GTLA 2GAHC 4A3EC 2WAQD 1K83C 3S2DC 1BS2A 4KMAA 1Y1WA 3A8KA 4P9SA 1HQMA 1F9NA 3CQZA 1O27A 3GTPA 1WOPA 1Y1WK 2JA5A 4KC6A 2CW0A 1TWGC 1WCMK 5CHPA 3CQZK 3SZZA 2NVQK 2E2JK 1TWFA 1L0WA 1O25A 3HOZC 1VJEA 3I4MC 1XZPB 4WJ4A 2E2HK 2PMZD 5TJ3A 1TWAA 4KMUA 3S1RK 4LOWA 2R7ZA 1DCHA 3QX3A 3GTKA 4BBRK 4OIOA 4KN7A 1J6VA 4BY1C 4G0WA 1WQGA 3GTKK 3LAPA 4PAAA 4BLBA 1WQHA 4AYBL 4Y7NC 5IP9C 1YNJA 2VUMK 3LPXA 1VRQC 3HOUK 1GE9A 4A93C 3AD8C 3AD9C 4Q5SA 1I3QK 4XSXA 3S1NC 1XPPA 1SFOA 4BKWA 4C3HC 3GEIA 2B63C 4C2MC 5M5YK 4LK0A 3GTLC 3M4OC 2NVYC 1SFOK 3H0GC 3FKIA 5C4XC 1Y1VC 4G0UA 1J6XA 3S14K 1BGWA 1I6VA 5IP7C 3HOYK 3L4JA 4OIRA 4A3IC 3FKIK 3HOWC 3M3YK 5M5XK 4LR2A 2O5IA 1TWCC 3PO3C 3S17K 5JFEA 3IPJA 2WB1L 4A3MC 2V6TA 4AYBD 4G7HA 2GSUA 1I50A 1WOOA 2RGRA 3A8JA 2A68A 3ERED 5FLMK 3TFIA 5JVOA 1I50K 5M3MK 4YFNA 3OPFA 2GAGC 4M1XA 3GDZA 4NOIA 3GTGC 2P5MA 2XCOA 4GTEA 2GSOA 3TTGA 2R92A 5EGEA 2R93C 5C4JC 1WCMC 3I4NC 1ZYRA 3S0XA 3OREA 2RH6A 2B63A 3GTOC 5D4DA 5TMFA 4Y52K 1SMYA 3GTLA 2JA7A 2BE5A 1PJ5A 4BXXK 1XXAA 1Y1VA 1B4BA 2NVXA
chains in the Genus database with same CATH topology
3TFHA 1PJ7A 1VRQC 3A8IA 3AD7C 1XZPB 1YX2A 2GAHC 4PABA 1XZPA 3GEHA 3AD8C 3AD9C 3TFJA 3TTGA 1X31C 3GEEA 3A8KA 3GEIA 1WORA 1WOOA 4P9SA 1WOSA 3A8JA 5L46A 1PJ6A 1V5VA 4PAAA 1WOPA 3GIRA 1WSRA 1VLOA 3GSIA 1WSVA 3TFIA 3ADAC 1XZQB 1PJ5A 1XZQA 2GAGC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TFH A;  1PJ7 A;  1VRQ C;  3A8I A;  3AD7 C;  1XZP B;  1YX2 A;  2GAH C;  4PAB A;  1XZP A;  3GEH A;  3AD8 C;  3AD9 C;  3TFJ A;  3TTG A;  1X31 C;  3GEE A;  3A8K A;  3GEI A;  1WOR A;  1WOO A;  4P9S A;  1WOS A;  3A8J A;  5L46 A;  1PJ6 A;  1V5V A;  4PAA A;  1WOP A;  3GIR A;  1WSR A;  1VLO A;  3GSI A;  1WSV A;  3TFI A;  3ADA C;  1XZQ B;  1PJ5 A;  1XZQ A;  2GAG C; 
#chains in the Genus database with same CATH topology
 1PJ7 A;  4BBR C;  2JA7 K;  2WB1 D;  1YX2 A;  4A3B K;  3BP3 A;  5IYD C;  1ISE A;  3S2H C;  2VUM C;  1VH2 A;  4KB4 A;  2EBB A;  2E2I A;  1WSR A;  1F7U A;  2A6H A;  2V6U A;  3T01 A;  1R9T A;  2JA6 C;  3GTM C;  4A3C K;  4KM8 A;  2E2I K;  3GTP K;  3EQL A;  5IOQ A;  3L4K A;  4C3I K;  1TWH C;  2JA5 K;  4RMF A;  3GTG A;  1O28 A;  1XXB A;  1R9T K;  3AQO A;  1TWF K;  3TFJ A;  3BP8 C;  3S15 C;  1EI6 A;  1O29 A;  3GTQ A;  1ZXO A;  2R93 A;  1TWA K;  1WOR A;  4GZY A;  2NVT C;  3M3Y C;  3G4A A;  2FQT A;  5L46 A;  3GTJ C;  4A3K C;  3GTQ K;  2R7Z K;  3K7A K;  3S17 C;  4AH6 A;  3FHZ A;  1WSV A;  3S1Q K;  3RZD C;  4A3F C;  3PO2 K;  1USM A;  1C0A A;  3TFH A;  2ZUF A;  1IW7 A;  4G0V A;  2D6F C;  1I6H C;  3CAG A;  5IYB K;  4BY7 C;  4LLG A;  4ILD A;  4C3J C;  1K83 A;  2Y0S L;  4A3L C;  1AB4 A;  4QJV A;  1IE0 A;  1YCL A;  1ZVU A;  5IOR A;  3S16 C;  1K83 K;  5IYC K;  3S2D K;  2W7V A;  2O5J A;  4A3J C;  1V5V A;  3RZO C;  1UV7 A;  1DCO A;  2GSN A;  3BUE A;  1EQR A;  2YU9 C;  4BLA A;  4X6A K;  1TWG A;  5HL8 A;  2JA6 A;  4OIN A;  2XCR B;  4BBS C;  1DD5 A;  1IQ0 A;  4G7Z A;  3T00 A;  3HOZ K;  3I4M K;  4BXX C;  1B4A A;  3Q3Q A;  4YFK A;  1BJT A;  3DXJ A;  4J3N A;  1PJ6 A;  3GTJ A;  4GTA A;  4Q4Z A;  1INN A;  4BY1 K;  1J6W A;  2JA8 K;  1IBA A;  4A3D K;  3FOE A;  4PAB A;  4OIQ A;  2JH3 A;  2Y0S D;  5IP9 K;  1Y1W C;  1EH1 A;  1BDF A;  3CQZ C;  2NVQ C;  4A3C C;  2E2J C;  4A3G K;  3GTP C;  1JVI A;  4C3I C;  5CJ9 A;  2R92 K;  3S1N K;  2E2H C;  1IL2 A;  4KAS A;  5IOT A;  2NVY A;  4C3H K;  1ZQ1 C;  2PA8 D;  3H0G A;  3S1R C;  4KMH A;  3N0B A;  2YU9 A;  2B63 K;  4C2M K;  3GTL K;  3M4O K;  5C4X K;  1Y1V K;  1TWC A;  2R7Z C;  1XXC A;  3N3Y A;  3GTK C;  2NVX K;  1JOE A;  3HOV K;  5TMC A;  5C3E K;  4YG2 A;  3AH5 A;  4MEY A;  4ZH4 A;  4A3I K;  3HOW K;  3S1M K;  4KAR A;  4QJV B;  4LJZ A;  4P5A A;  1TWC K;  2PHC B;  4XCH A;  3PO3 K;  3SZY A;  2CFA B;  1VGX A;  1EK8 A;  4KAT A;  3HOU C;  4MQ9 A;  1G51 A;  1XZQ A;  1I3Q C;  3A8I A;  3GEH A;  4XLP A;  5IYC C;  1KQ4 A;  4XSZ A;  1SFO C;  1X31 C;  4KN4 A;  1EFW A;  1WQF A;  2FQO A;  1ZBS A;  4X6A C;  3S14 C;  3WOD A;  3GTG K;  1WCM A;  3HOY C;  4KMD A;  3FKI C;  3GTO A;  3FOF A;  4KAW X;  2R93 K;  2E2H A;  5C4J K;  3I4N K;  1O2B A;  4JK1 A;  4OIP A;  4QIW D;  1O2F B;  3GTO K;  4WJ3 M;  3NUH A;  3V4G A;  4GTF A;  1O2A A;  4P5B A;  5M5W K;  2A69 A;  4GTC A;  4GTD A;  5FLM C;  5C44 K;  1I50 C;  1YNN A;  3HKZ L;  3HOX K;  2JA8 C;  4A3E K;  4A3D C;  2VUM A;  2CFA A;  5IYD K;  3GSI A;  1VLO A;  4G7O A;  3S2H K;  2XCQ A;  4FZB A;  1I3Q A;  5IOS A;  3HXA A;  3GTM A;  1USO A;  4A3G C;  3N0C A;  1TWH A;  2PA8 L;  2R92 C;  1TWG K;  4GTB A;  4Y52 C;  2JA6 K;  3GTM K;  3OEP A;  4KB2 A;  1TWH K;  4O2D A;  3MML B;  4LK1 A;  5FJ8 K;  2JA7 C;  3S15 K;  3H3V L;  4FM9 A;  4A3B C;  3VA7 A;  1XZQ B;  2NVX C;  3HOV C;  5C3E C;  2Y3P A;  4YFX A;  2NVT K;  3S1M C;  3GTJ K;  4A3K K;  3T02 A;  1F93 A;  4C45 A;  1XZP A;  3HKZ D;  1J98 A;  3RZD K;  4A3F K;  4Y7N K;  3AQP A;  5EGH A;  1DCP A;  1O24 A;  1WIH A;  3GEE A;  4DDQ A;  4MEX A;  1IS1 A;  4KDD A;  1RU0 A;  4A93 K;  1I6H K;  2WAQ L;  3LAJ A;  2E2I C;  1HI9 A;  4GT9 A;  4BY7 K;  4C3J K;  2JA5 C;  1JQW A;  4LQY A;  1R9T C;  4A3L K;  1TWF C;  5M3F K;  4WIL A;  3S16 K;  5E68 A;  1O26 A;  3AD7 C;  4A3J K;  3RZO K;  4GFQ A;  2NVY K;  1TWA C;  3H0G K;  2YU9 K;  4QIW L;  3GTQ C;  2PPB A;  4KM9 A;  3G4C A;  3K7A C;  5IP7 K;  3JST A;  4XLN A;  2KWA A;  3H3V D;  3S1Q C;  2PMZ L;  3PO2 C;  2ZFZ A;  1WOS A;  4BBS K;  2V6S A;  3GIR A;  3ADA C;  2A6E A;  5IYB C;  1F7V A;  4A3M K;  2ZUE A;  5C44 C;  2P8T A;  3HOX C;  4GTL A;  2GAH C;  4A3E C;  2WAQ D;  1K83 C;  3S2D C;  1BS2 A;  4KMA A;  1Y1W A;  3A8K A;  4P9S A;  1HQM A;  1F9N A;  3CQZ A;  1O27 A;  3GTP A;  1WOP A;  1Y1W K;  2JA5 A;  4KC6 A;  2CW0 A;  1TWG C;  1WCM K;  5CHP A;  3CQZ K;  3SZZ A;  2NVQ K;  2E2J K;  1TWF A;  1L0W A;  1O25 A;  3HOZ C;  1VJE A;  3I4M C;  1XZP B;  4WJ4 A;  2E2H K;  2PMZ D;  5TJ3 A;  1TWA A;  4KMU A;  3S1R K;  4LOW A;  2R7Z A;  1DCH A;  3QX3 A;  3GTK A;  4BBR K;  4OIO A;  4KN7 A;  1J6V A;  4BY1 C;  4G0W A;  1WQG A;  3GTK K;  3LAP A;  4PAA A;  4BLB A;  1WQH A;  4AYB L;  4Y7N C;  5IP9 C;  1YNJ A;  2VUM K;  3LPX A;  1VRQ C;  3HOU K;  1GE9 A;  4A93 C;  3AD8 C;  3AD9 C;  4Q5S A;  1I3Q K;  4XSX A;  3S1N C;  1XPP A;  1SFO A;  4BKW A;  4C3H C;  3GEI A;  2B63 C;  4C2M C;  5M5Y K;  4LK0 A;  3GTL C;  3M4O C;  2NVY C;  1SFO K;  3H0G C;  3FKI A;  5C4X C;  1Y1V C;  4G0U A;  1J6X A;  3S14 K;  1BGW A;  1I6V A;  5IP7 C;  3HOY K;  3L4J A;  4OIR A;  4A3I C;  3FKI K;  3HOW C;  3M3Y K;  5M5X K;  4LR2 A;  2O5I A;  1TWC C;  3PO3 C;  3S17 K;  5JFE A;  3IPJ A;  2WB1 L;  4A3M C;  2V6T A;  4AYB D;  4G7H A;  2GSU A;  1I50 A;  1WOO A;  2RGR A;  3A8J A;  2A68 A;  3ERE D;  5FLM K;  3TFI A;  5JVO A;  1I50 K;  5M3M K;  4YFN A;  3OPF A;  2GAG C;  4M1X A;  3GDZ A;  4NOI A;  3GTG C;  2P5M A;  2XCO A;  4GTE A;  2GSO A;  3TTG A;  2R92 A;  5EGE A;  2R93 C;  5C4J C;  1WCM C;  3I4N C;  1ZYR A;  3S0X A;  3ORE A;  2RH6 A;  2B63 A;  3GTO C;  5D4D A;  5TMF A;  4Y52 K;  1SMY A;  3GTL A;  2JA7 A;  2BE5 A;  1PJ5 A;  4BXX K;  1XXA A;  1Y1V A;  1B4B A;  2NVX A; 
#chains in the Genus database with same CATH homology
 3TFH A;  1PJ7 A;  1VRQ C;  3A8I A;  3AD7 C;  1XZP B;  1YX2 A;  2GAH C;  4PAB A;  1XZP A;  3GEH A;  3AD8 C;  3AD9 C;  3TFJ A;  3TTG A;  1X31 C;  3GEE A;  3A8K A;  3GEI A;  1WOR A;  1WOO A;  4P9S A;  1WOS A;  3A8J A;  5L46 A;  1PJ6 A;  1V5V A;  4PAA A;  1WOP A;  3GIR A;  1WSR A;  1VLO A;  3GSI A;  1WSV A;  3TFI A;  3ADA C;  1XZQ B;  1PJ5 A;  1XZQ A;  2GAG C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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