1JQWA

The 2.3 angstrom resolution structure of bacillus subtilis luxs/homocysteine complex
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
150
structure length
149
Chain Sequence
b'ELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 1.2 A structure of a novel quorum-sensing protein, Bacillus subtilis LuxS
pubmed doi rcsb
molecule keywords Autoinducer-2 production protein luxS
source organism Bacillus subtilis
molecule tags Signaling protein
total genus 43
structure length 149
sequence length 150
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1jqwA00
5E68A 1J6VA 1VJEA 1J98A 1J6XA 1VGXA 1IE0A 1JVIA 1VH2A 1JQWA 1YCLA 2FQOA 2FQTA 1JOEA 1INNA 4XCHA 1J6WA
chains in the Genus database with same CATH superfamily
4LOWA 4GFQA 3S14K 3HOWC 1IS1A 1ZYRA 2P5MA 5M3MK 4OIOA 2XCOA 3S1QK 1WCMK 4A3KK 1TWGA 1XZQB 1WQGA 3G4CA 1F93A 4C3IK 4FM9A 2FQTA 3VA7A 2NVQC 3GIRA 1SMYA 3GTQC 2VUMK 4C3JK 2WAQD 3GTGK 4GTDA 3I4MC 3GTKA 2JA5K 1DCHA 3IPJA 2RGRA 3S14C 3WODA 2ZUEA 4KB2A 5CHPA 1J6XA 3S1QC 1WCMC 4A3KC 2E2IK 1AB4A 5FLMK 4LK0A 4YG2A 4QJVB 4C3IC 4WJ4A 5E68A 1XZPA 3AH5A 5C44K 2NVYA 2XCQA 3PO3K 4KMUA 3CQZA 4MEYA 2VUMC 3AD8C 2GSNA 3GTGC 3BP8C 3H3VD 1O2AA 2B63K 3A8JA 2PMZD 2JA5C 1K83A 3JSTA 1B4BA 2JA7A 5IP7K 4KATA 2O5JA 3L4JA 1WOOA 1XPPA 3GTOK 4X6AK 4BLAA 2E2IC 1EH1A 5FLMC 1B4AA 1O2FB 3TFIA 4KN7A 4RMFA 1F7UA 3N0CA 3OEPA 4C2MK 1TWCA 3I4NK 4A3JK 2P8TA 5C44C 3AD7C 1F9NA 3HXAA 4P9SA 1USMA 3GEIA 2B63C 2WB1L 2RH6A 1F7VA 3HKZD 2FQOA 1Y1WA 5L46A 1ZQ1C 5IP7C 1IBAA 2R92K 3FHZA 4X6AC 1X31C 3FKIA 4G0WA 3HOUC 4QJVA 2R93A 4A3GK 3S2HK 3GTLA 4JK1A 4QIWD 4FZBA 2NVQK 4A93K 4PAAA 5C4JK 1O2BA 1J98A 3BP3A 4C2MC 3I4NC 4A3JC 4KC6A 4AYBD 1R9TA 2NVYK 4G7OA 2YU9K 1ZXOA 1IL2A 2V6UA 1O25A 4KAWX 2ZUFA 3BUEA 2JA7K 5C3EK 2E2HA 4A3EK 2R92C 2BE5A 4O2DA 4A3IK 3NUHA 4BXXK 1JQWA 2NVTK 1I3QK 4YFNA 4BKWA 1BDFA 4OINA 4A3GC 4A3DK 3S2HC 1XXBA 1WSVA 3M3YK 1UV7A 1INNA 2A68A 3HOYK 4A93C 3TFHA 1I6HK 5C4JC 5EGHA 1VGXA 3L4KA 1I50A 4GTCA 3OREA 1EK8A 3GSIA 4OIQA 3S1NK 2PPBA 3LPXA 2NVYC 4KMDA 2PA8D 1TWHK 4YFKA 5IOTA 2CFAA 2YU9C 3TTGA 2PA8L 4BY7K 4KASA 3PO2K 1K83C 1TWFK 1Y1WK 2JA7C 5C3EC 4XSXA 1EQRA 4WILA 4A3EC 5M5XK 3FOFA 4A3IC 4BXXC 3GTPA 2NVTC 1I3QC 5M3FK 3QX3A 2Y0SL 3S0XA 4KDDA 3MMLB 4A3DC 2R93K 4LLGA 1WQHA 2EBBA 1ZBSA 4P5BA 3SZZA 3GTLK 5JVOA 3M3YC 3HOYC 1J6VA 1I6HC 5D4DA 5JFEA 4GTEA 4Q5SA 5IOQA 3A8IA 5IYBK 1TWCC 4DDQA 5IYDK 3TFJA 2R7ZA 3S1NC 5FJ8K 1TWHC 3A8KA 4G7ZA 4BY7C 3T02A 3PO2C 3FOEA 4P5AA 4KM8A 1TWFC 4GTFA 1Y1WC 1XZQA 2JA8C 3AQPA 4WJ3M 3GTQA 1EFWA 2E2HK 1WIHA 1GE9A 3HOUK 2GSOA 1USOA 1TWGK 3H0GA 2R93C 1PJ6A 3GTLC 3S17K 3OPFA 2V6TA 1BGWA 5IP9K 5IYBC 3GTJA 1WCMA 5IYDC 2WB1D 4BBRK 5TMFA 4NOIA 1O24A 4OIPA 3GTKK 2A6EA 5TJ3A 1O28A 5CJ9A 3Q3QA 2E2HC 3HOVK 3S2DK 4YFXA 1TWGC 3GTGA 3LAJA 4C45A 4A3CK 1J6WA 1O27A 3HOZK 3S17C 1BS2A 4KN4A 3S1RK 4AH6A 3G4AA 5IYCK 5IP9C 1I50C 2GSUA 3CQZK 1G51A 2NVXA 2R7ZK 3EQLA 2D6FC 4BBRC 3GTMA 5C4XK 3AD9C 3GTKC 2GAGC 4KARA 1K83K 1PJ7A 2V6SA 3GDZA 1I6VA 4BY1C 1C0AA 4XCHA 3HOVC 1Y1VA 3S2DC 5M5YK 1DD5A 1YNNA 4A3CC 1WOSA 1PJ5A 3HOZC 1DCOA 5EGEA 2Y3PA 4J3NA 1TWAA 2CW0A 5HL8A 1TWCK 3S1RC 3GTOA 1IE0A 5IYCC 2GAHC 3CQZC 3GTJK 4XSZA 2R7ZC 1IW7A 4MEXA 5C4XC 4BLBA 1VRQC 4LJZA 3RZDK 4LQYA 1VLOA 3S1MC 5M5WK 4C3HK 1KQ4A 2Y0SD 2JA8K 2JH3A 3N0BA 3S16K 4A3FK 4A3BK 2JA6A 1SFOA 3FKIK 1WOPA 2A6HA 2E2JK 3DXJA 3H0GC 4A3MK 3HOXK 2WAQL 1L0WA 4XLNA 4A3LK 1XXCA 1WQFA 4KMAA 1YNJA 1WORA 2R92A 1R9TK 3GTJC 5IORA 2NVXK 4BBSK 3GTMK 4G7HA 1VJEA 3SZYA 3RZDC 4KM9A 4M1XA 3AQOA 1YCLA 4C3HC 1XXAA 3ERED 3S16C 3K7AK 4KB4A 1HQMA 4A3FC 4A3BC 3FKIC 1EI6A 2E2JC 1Y1VK 4C3JC 3GEHA 2YU9A 4A3MC 5IOSA 3HOXC 4LK1A 3H3VL 3N3YA 1YX2A 4A3LC 1TWAK 1I50K 3M4OK 2PMZL 3ADAC 1I3QA 3GEEA 1BJTA 1R9TC 2NVXC 1DCPA 4BBSC 3GTMC 4PABA 3S15K 4GTBA 3RZOK 4Y7NK 4MQ9A 4Y52K 4KMHA 4BY1K 2W7VA 3T00A 4XLPA 3CAGA 1IQ0A 1V5VA 3K7AC 2VUMA 3GTPK 1JOEA 3PO3C 2JA6K 1SFOK 1Y1VC 1TWHA 4GZYA 2JA5A 1RU0A 4ILDA 1JVIA 1O29A 2XCRB 2CFAB 1TWFA 3HOWK 2A69A 1ISEA 1TWAC 1ZVUA 4GT9A 3M4OC 2KWAA 4G0VA 1HI9A 4G0UA 3GTOC 3HKZL 2E2IA 1VH2A 2ZFZA 3S15C 2PHCB 3RZOC 4LR2A 4Y7NC 3S1MK 4Y52C 3LAPA 1O26A 4QIWL 3GTQK 4OIRA 3T01A 3GTPC 3V4GA 4Q4ZA 1XZPB 1WSRA 2O5IA 3H0GK 2JA6C 5TMCA 1SFOC 3I4MK 2B63A 4GTLA 4AYBL 4ZH4A 4GTAA
chains in the Genus database with same CATH topology
5E68A 1J6VA 1VJEA 1J98A 1J6XA 1VGXA 1IE0A 1JVIA 1VH2A 1JQWA 1YCLA 2FQOA 2FQTA 1JOEA 1INNA 4XCHA 1J6WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E68 A;  1J6V A;  1VJE A;  1J98 A;  1J6X A;  1VGX A;  1IE0 A;  1JVI A;  1VH2 A;  1JQW A;  1YCL A;  2FQO A;  2FQT A;  1JOE A;  1INN A;  4XCH A;  1J6W A; 
#chains in the Genus database with same CATH topology
 4LOW A;  4GFQ A;  3S14 K;  3HOW C;  1IS1 A;  1ZYR A;  2P5M A;  5M3M K;  4OIO A;  2XCO A;  3S1Q K;  1WCM K;  4A3K K;  1TWG A;  1XZQ B;  1WQG A;  3G4C A;  1F93 A;  4C3I K;  4FM9 A;  2FQT A;  3VA7 A;  2NVQ C;  3GIR A;  1SMY A;  3GTQ C;  2VUM K;  4C3J K;  2WAQ D;  3GTG K;  4GTD A;  3I4M C;  3GTK A;  2JA5 K;  1DCH A;  3IPJ A;  2RGR A;  3S14 C;  3WOD A;  2ZUE A;  4KB2 A;  5CHP A;  1J6X A;  3S1Q C;  1WCM C;  4A3K C;  2E2I K;  1AB4 A;  5FLM K;  4LK0 A;  4YG2 A;  4QJV B;  4C3I C;  4WJ4 A;  5E68 A;  1XZP A;  3AH5 A;  5C44 K;  2NVY A;  2XCQ A;  3PO3 K;  4KMU A;  3CQZ A;  4MEY A;  2VUM C;  3AD8 C;  2GSN A;  3GTG C;  3BP8 C;  3H3V D;  1O2A A;  2B63 K;  3A8J A;  2PMZ D;  2JA5 C;  1K83 A;  3JST A;  1B4B A;  2JA7 A;  5IP7 K;  4KAT A;  2O5J A;  3L4J A;  1WOO A;  1XPP A;  3GTO K;  4X6A K;  4BLA A;  2E2I C;  1EH1 A;  5FLM C;  1B4A A;  1O2F B;  3TFI A;  4KN7 A;  4RMF A;  1F7U A;  3N0C A;  3OEP A;  4C2M K;  1TWC A;  3I4N K;  4A3J K;  2P8T A;  5C44 C;  3AD7 C;  1F9N A;  3HXA A;  4P9S A;  1USM A;  3GEI A;  2B63 C;  2WB1 L;  2RH6 A;  1F7V A;  3HKZ D;  2FQO A;  1Y1W A;  5L46 A;  1ZQ1 C;  5IP7 C;  1IBA A;  2R92 K;  3FHZ A;  4X6A C;  1X31 C;  3FKI A;  4G0W A;  3HOU C;  4QJV A;  2R93 A;  4A3G K;  3S2H K;  3GTL A;  4JK1 A;  4QIW D;  4FZB A;  2NVQ K;  4A93 K;  4PAA A;  5C4J K;  1O2B A;  1J98 A;  3BP3 A;  4C2M C;  3I4N C;  4A3J C;  4KC6 A;  4AYB D;  1R9T A;  2NVY K;  4G7O A;  2YU9 K;  1ZXO A;  1IL2 A;  2V6U A;  1O25 A;  4KAW X;  2ZUF A;  3BUE A;  2JA7 K;  5C3E K;  2E2H A;  4A3E K;  2R92 C;  2BE5 A;  4O2D A;  4A3I K;  3NUH A;  4BXX K;  1JQW A;  2NVT K;  1I3Q K;  4YFN A;  4BKW A;  1BDF A;  4OIN A;  4A3G C;  4A3D K;  3S2H C;  1XXB A;  1WSV A;  3M3Y K;  1UV7 A;  1INN A;  2A68 A;  3HOY K;  4A93 C;  3TFH A;  1I6H K;  5C4J C;  5EGH A;  1VGX A;  3L4K A;  1I50 A;  4GTC A;  3ORE A;  1EK8 A;  3GSI A;  4OIQ A;  3S1N K;  2PPB A;  3LPX A;  2NVY C;  4KMD A;  2PA8 D;  1TWH K;  4YFK A;  5IOT A;  2CFA A;  2YU9 C;  3TTG A;  2PA8 L;  4BY7 K;  4KAS A;  3PO2 K;  1K83 C;  1TWF K;  1Y1W K;  2JA7 C;  5C3E C;  4XSX A;  1EQR A;  4WIL A;  4A3E C;  5M5X K;  3FOF A;  4A3I C;  4BXX C;  3GTP A;  2NVT C;  1I3Q C;  5M3F K;  3QX3 A;  2Y0S L;  3S0X A;  4KDD A;  3MML B;  4A3D C;  2R93 K;  4LLG A;  1WQH A;  2EBB A;  1ZBS A;  4P5B A;  3SZZ A;  3GTL K;  5JVO A;  3M3Y C;  3HOY C;  1J6V A;  1I6H C;  5D4D A;  5JFE A;  4GTE A;  4Q5S A;  5IOQ A;  3A8I A;  5IYB K;  1TWC C;  4DDQ A;  5IYD K;  3TFJ A;  2R7Z A;  3S1N C;  5FJ8 K;  1TWH C;  3A8K A;  4G7Z A;  4BY7 C;  3T02 A;  3PO2 C;  3FOE A;  4P5A A;  4KM8 A;  1TWF C;  4GTF A;  1Y1W C;  1XZQ A;  2JA8 C;  3AQP A;  4WJ3 M;  3GTQ A;  1EFW A;  2E2H K;  1WIH A;  1GE9 A;  3HOU K;  2GSO A;  1USO A;  1TWG K;  3H0G A;  2R93 C;  1PJ6 A;  3GTL C;  3S17 K;  3OPF A;  2V6T A;  1BGW A;  5IP9 K;  5IYB C;  3GTJ A;  1WCM A;  5IYD C;  2WB1 D;  4BBR K;  5TMF A;  4NOI A;  1O24 A;  4OIP A;  3GTK K;  2A6E A;  5TJ3 A;  1O28 A;  5CJ9 A;  3Q3Q A;  2E2H C;  3HOV K;  3S2D K;  4YFX A;  1TWG C;  3GTG A;  3LAJ A;  4C45 A;  4A3C K;  1J6W A;  1O27 A;  3HOZ K;  3S17 C;  1BS2 A;  4KN4 A;  3S1R K;  4AH6 A;  3G4A A;  5IYC K;  5IP9 C;  1I50 C;  2GSU A;  3CQZ K;  1G51 A;  2NVX A;  2R7Z K;  3EQL A;  2D6F C;  4BBR C;  3GTM A;  5C4X K;  3AD9 C;  3GTK C;  2GAG C;  4KAR A;  1K83 K;  1PJ7 A;  2V6S A;  3GDZ A;  1I6V A;  4BY1 C;  1C0A A;  4XCH A;  3HOV C;  1Y1V A;  3S2D C;  5M5Y K;  1DD5 A;  1YNN A;  4A3C C;  1WOS A;  1PJ5 A;  3HOZ C;  1DCO A;  5EGE A;  2Y3P A;  4J3N A;  1TWA A;  2CW0 A;  5HL8 A;  1TWC K;  3S1R C;  3GTO A;  1IE0 A;  5IYC C;  2GAH C;  3CQZ C;  3GTJ K;  4XSZ A;  2R7Z C;  1IW7 A;  4MEX A;  5C4X C;  4BLB A;  1VRQ C;  4LJZ A;  3RZD K;  4LQY A;  1VLO A;  3S1M C;  5M5W K;  4C3H K;  1KQ4 A;  2Y0S D;  2JA8 K;  2JH3 A;  3N0B A;  3S16 K;  4A3F K;  4A3B K;  2JA6 A;  1SFO A;  3FKI K;  1WOP A;  2A6H A;  2E2J K;  3DXJ A;  3H0G C;  4A3M K;  3HOX K;  2WAQ L;  1L0W A;  4XLN A;  4A3L K;  1XXC A;  1WQF A;  4KMA A;  1YNJ A;  1WOR A;  2R92 A;  1R9T K;  3GTJ C;  5IOR A;  2NVX K;  4BBS K;  3GTM K;  4G7H A;  1VJE A;  3SZY A;  3RZD C;  4KM9 A;  4M1X A;  3AQO A;  1YCL A;  4C3H C;  1XXA A;  3ERE D;  3S16 C;  3K7A K;  4KB4 A;  1HQM A;  4A3F C;  4A3B C;  3FKI C;  1EI6 A;  2E2J C;  1Y1V K;  4C3J C;  3GEH A;  2YU9 A;  4A3M C;  5IOS A;  3HOX C;  4LK1 A;  3H3V L;  3N3Y A;  1YX2 A;  4A3L C;  1TWA K;  1I50 K;  3M4O K;  2PMZ L;  3ADA C;  1I3Q A;  3GEE A;  1BJT A;  1R9T C;  2NVX C;  1DCP A;  4BBS C;  3GTM C;  4PAB A;  3S15 K;  4GTB A;  3RZO K;  4Y7N K;  4MQ9 A;  4Y52 K;  4KMH A;  4BY1 K;  2W7V A;  3T00 A;  4XLP A;  3CAG A;  1IQ0 A;  1V5V A;  3K7A C;  2VUM A;  3GTP K;  1JOE A;  3PO3 C;  2JA6 K;  1SFO K;  1Y1V C;  1TWH A;  4GZY A;  2JA5 A;  1RU0 A;  4ILD A;  1JVI A;  1O29 A;  2XCR B;  2CFA B;  1TWF A;  3HOW K;  2A69 A;  1ISE A;  1TWA C;  1ZVU A;  4GT9 A;  3M4O C;  2KWA A;  4G0V A;  1HI9 A;  4G0U A;  3GTO C;  3HKZ L;  2E2I A;  1VH2 A;  2ZFZ A;  3S15 C;  2PHC B;  3RZO C;  4LR2 A;  4Y7N C;  3S1M K;  4Y52 C;  3LAP A;  1O26 A;  4QIW L;  3GTQ K;  4OIR A;  3T01 A;  3GTP C;  3V4G A;  4Q4Z A;  1XZP B;  1WSR A;  2O5I A;  3H0G K;  2JA6 C;  5TMC A;  1SFO C;  3I4M K;  2B63 A;  4GTL A;  4AYB L;  4ZH4 A;  4GTA A; 
#chains in the Genus database with same CATH homology
 5E68 A;  1J6V A;  1VJE A;  1J98 A;  1J6X A;  1VGX A;  1IE0 A;  1JVI A;  1VH2 A;  1JQW A;  1YCL A;  2FQO A;  2FQT A;  1JOE A;  1INN A;  4XCH A;  1J6W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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