1JQWA

The 2.3 angstrom resolution structure of bacillus subtilis luxs/homocysteine complex
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
150
structure length
149
Chain Sequence
ELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Bacillus subtilis
publication title The 1.2 A structure of a novel quorum-sensing protein, Bacillus subtilis LuxS
pubmed doi rcsb
molecule keywords Autoinducer-2 production protein luxS
total genus 43
structure length 149
sequence length 150
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1jqwA00
1J98A 1VGXA 1JVIA 4XCHA 1JQWA 1VH2A 1YCLA 1IE0A 1INNA 2FQTA 2FQOA 1JOEA 1J6VA 1VJEA 1J6WA 5E68A 1J6XA
chains in the Genus database with same CATH superfamily
4A3LK 2PMZL 4MEYA 3N0CA 4BY1C 3ERED 3GTOA 1WQFA 5FJ8K 2R7ZK 3HOYK 1KQ4A 1VRQC 1XZQA 2XCQA 3HOUK 1HI9A 4FZBA 4YFNA 3GTOK 3S16K 1WOSA 2JA7K 2JA5K 1PJ5A 1J6XA 3T00A 3M3YC 2WB1D 2CFAB 4A93C 5IYBC 5IP7K 4PAAA 5CJ9A 2ZFZA 2NVXA 2PPBA 4GT9A 4KN4A 1I6HC 4KMUA 5M3FK 1O27A 3GTGK 4OIPA 4OIQA 4A3BC 3BP8C 3S1MC 3NUHA 3HOXC 3H3VD 1BS2A 2Y0SD 1Y1WC 4BY7K 2R92K 3PO2C 3TFJA 1TWGK 1ZQ1C 1F9NA 1INNA 4YG2A 4AYBD 2NVYA 1XXAA 1PJ6A 3RZOC 1SMYA 5FLMK 3LPXA 4C2MC 5TMCA 4C3HK 4G7ZA 2JA8C 2NVQC 3HOVC 1EQRA 5C3EK 3K7AK 2B63K 3GTMA 3I4NK 3S15K 5IOSA 3AQOA 2VUMK 1WORA 3M4OC 1YNJA 1RU0A 1Y1VA 4A3JK 4OINA 3QX3A 3S2DK 3S1QK 3S1RK 5C4XC 1DCHA 4A3KK 3S1NK 1PJ7A 2W7VA 1ISEA 4XSZA 2P5MA 4ILDA 1TWAA 1O2BA 2GAGC 3Q3QA 4Y7NK 5IOQA 1Y1VK 2JA6K 3GSIA 4PABA 1R9TC 3H0GK 3GTKA 3JSTA 2E2JK 4C3JC 2D6FC 1TWHC 1VGXA 4BY1K 4X6AK 3S17K 3BUEA 1SFOC 4BXXK 1BJTA 3VA7A 2E2IA 4LJZA 4JK1A 1TWFA 3DXJA 1TWCK 3GTKK 3I4MC 3HOZC 1K83C 3OEPA 4YFXA 1I3QC 2R7ZA 4Y52C 4A3GC 4GZYA 1XZPA 5C44K 2E2HA 3HOWC 3GTQC 3GEEA 3GTPC 3S2HK 3A8JA 3M3YK 3PO3C 1TWFK 2YU9A 3GTJC 4QJVB 1O25A 3MMLB 2JA5A 2JA7A 5IYCK 4A3CC 1DCPA 4KM8A 4P5AA 4YFKA 2GSOA 2Y0SL 2ZUEA 3FKIK 2E2HK 5M5YK 1V5VA 3HOXK 3ADAC 3L4JA 4KMHA 1VLOA 1YNNA 4A3IK 4G7HA 4KB4A 1GE9A 2YU9K 5JVOA 3GTGA 2R93K 1WIHA 3PO2K 1EH1A 1I6VA 4KN7A 3GTLC 4OIRA 1WCMA 4GTBA 4WJ4A 5EGHA 1USOA 1J98A 4BKWA 1IQ0A 2R92A 3S14C 2PA8D 1TWGA 4O2DA 3CQZC 3S0XA 1J6WA 1I50C 3A8KA 5E68A 4C2MK 5C4JC 2NVTC 1JQWA 5TMFA 4A3DC 4LQYA 1ZBSA 2Y3PA 2ZUFA 4A3MK 1WCMK 4NOIA 2CFAA 2B63A 3HKZD 2A68A 4GTCA 4RMFA 2VUMA 1WOPA 2WAQD 4QIWL 2R7ZC 3FHZA 3HOYC 1O2FB 3N0BA 1YX2A 2PMZD 2FQOA 2RH6A 1WOOA 3HOUC 2FQTA 5JFEA 2GSUA 3GTOC 4GTEA 4XSXA 3TTGA 4C45A 5IP9K 4KC6A 4KDDA 4C3JK 1DCOA 1O26A 2JA6A 1IS1A 3H0GA 4C3IK 5IP7C 2EBBA 3V4GA 4BBSK 5IYDK 1WQGA 4A3EK 3GTGC 3I4MK 4G0VA 3AQPA 4Y52K 3GEHA 1AB4A 4A3FC 1TWCA 4BBRK 4BY7C 3TFIA 3HXAA 3OREA 1VJEA 2RGRA 2NVXC 4KM9A 1IW7A 1O29A 3GTJK 1F7VA 4GTLA 5HL8A 4KAWX 5IORA 3IPJA 1EK8A 5FLMC 3RZDC 4C3HC 4KASA 4KARA 4LK1A 5D4DA 5C3EC 3K7AC 2B63C 2WB1L 3I4NC 2VUMC 3T02A 3FKIA 3GDZA 4A3JC 3S2DC 3S1QC 2NVYC 1JVIA 4A3KC 3S1NC 4A93K 3AD8C 5IYBK 2R93A 5EGEA 3H3VL 3GTMC 2V6SA 4ZH4A 1I50K 1I6HK 3A8IA 4LK0A 1G51A 4G0UA 4Y7NC 4A3BK 1Y1VC 3S1MK 1XXCA 4BLAA 1XZQB 5M5XK 3SZYA 2E2JC 4OIOA 4AYBL 1WQHA 1Y1WK 1B4BA 5CHPA 1TWAC 4QJVA 4G0WA 4X6AC 3S17C 4BXXC 4P5BA 2V6UA 1O28A 2XCOA 1JOEA 1TWCC 3RZOK 3GTKC 4XCHA 3LAPA 2NVQK 1IL2A 2JA8K 3HOVK 1WSRA 1F93A 1VH2A 2O5IA 1XPPA 2GSNA 5C44C 4AH6A 3FOFA 3M4OK 1O24A 3S2HC 4KATA 2E2IC 1ZYRA 1UV7A 4A3LC 1TWFC 5C4XK 1IE0A 1R9TA 4XLNA 5IYCC 4MQ9A 1USMA 1ZXOA 1TWHA 4LOWA 1SFOA 3FKIC 2E2HC 1EI6A 4A3IC 1EFWA 5M3MK 4A3FK 2YU9C 1R9TK 3S16C 3GIRA 2R93C 4P9SA 4GTFA 1K83A 3T01A 2JA7C 2JA5C 1J6VA 1I3QA 5TJ3A 4GFQA 2NVXK 2A6HA 3SZZA 2KWAA 2GAHC 1TWHK 4BLBA 4LR2A 5L46A 4DDQA 3FOEA 4J3NA 1SFOK 4KMAA 3GTQA 2XCRB 3GTPA 1DD5A 1F7UA 1WSVA 2O5JA 3AH5A 3RZDK 3GTJA 1IBAA 3HOZK 1K83K 4KMDA 1I3QK 4A3GK 3OPFA 4A3MC 1YCLA 1WCMC 1X31C 4XLPA 3HOWK 4M1XA 3GTQK 2NVYK 2CW0A 3GTPK 2R92C 1TWGC 3CAGA 3N3YA 3PO3K 1ZVUA 2V6TA 3BP3A 4A3CK 3GTMK 5M5WK 3GTLA 1XXBA 3EQLA 3AD9C 1BGWA 4QIWD 4Q5SA 4G7OA 3CQZA 2P8TA 1I50A 5IP9C 3S15C 1O2AA 2A69A 4MEXA 2BE5A 1XZPB 1TWAK 4FM9A 2PA8L 1HQMA 3S1RC 3GEIA 3GTLK 1BDFA 3L4KA 3G4AA 4C3IC 3G4CA 1C0AA 1B4AA 1Y1WA 4BBSC 4WJ3M 5IYDC 4Q4ZA 3S14K 3TFHA 4A3EC 3CQZK 4GTAA 5C4JK 2A6EA 4KB2A 3WODA 2NVTK 5IOTA 3HKZL 3AD7C 4GTDA 4LLGA 2JA6C 4A3DK 2JH3A 1L0WA 3LAJA 3H0GC 4BBRC 2WAQL 4WILA 2E2IK 2PHCB
chains in the Genus database with same CATH topology
1J98A 1VGXA 1JVIA 4XCHA 1JQWA 1VH2A 1YCLA 1IE0A 1INNA 2FQTA 2FQOA 1JOEA 1J6VA 1VJEA 1J6WA 5E68A 1J6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J98 A;  1VGX A;  1JVI A;  4XCH A;  1JQW A;  1VH2 A;  1YCL A;  1IE0 A;  1INN A;  2FQT A;  2FQO A;  1JOE A;  1J6V A;  1VJE A;  1J6W A;  5E68 A;  1J6X A; 
#chains in the Genus database with same CATH topology
 4A3L K;  2PMZ L;  4MEY A;  3N0C A;  4BY1 C;  3ERE D;  3GTO A;  1WQF A;  5FJ8 K;  2R7Z K;  3HOY K;  1KQ4 A;  1VRQ C;  1XZQ A;  2XCQ A;  3HOU K;  1HI9 A;  4FZB A;  4YFN A;  3GTO K;  3S16 K;  1WOS A;  2JA7 K;  2JA5 K;  1PJ5 A;  1J6X A;  3T00 A;  3M3Y C;  2WB1 D;  2CFA B;  4A93 C;  5IYB C;  5IP7 K;  4PAA A;  5CJ9 A;  2ZFZ A;  2NVX A;  2PPB A;  4GT9 A;  4KN4 A;  1I6H C;  4KMU A;  5M3F K;  1O27 A;  3GTG K;  4OIP A;  4OIQ A;  4A3B C;  3BP8 C;  3S1M C;  3NUH A;  3HOX C;  3H3V D;  1BS2 A;  2Y0S D;  1Y1W C;  4BY7 K;  2R92 K;  3PO2 C;  3TFJ A;  1TWG K;  1ZQ1 C;  1F9N A;  1INN A;  4YG2 A;  4AYB D;  2NVY A;  1XXA A;  1PJ6 A;  3RZO C;  1SMY A;  5FLM K;  3LPX A;  4C2M C;  5TMC A;  4C3H K;  4G7Z A;  2JA8 C;  2NVQ C;  3HOV C;  1EQR A;  5C3E K;  3K7A K;  2B63 K;  3GTM A;  3I4N K;  3S15 K;  5IOS A;  3AQO A;  2VUM K;  1WOR A;  3M4O C;  1YNJ A;  1RU0 A;  1Y1V A;  4A3J K;  4OIN A;  3QX3 A;  3S2D K;  3S1Q K;  3S1R K;  5C4X C;  1DCH A;  4A3K K;  3S1N K;  1PJ7 A;  2W7V A;  1ISE A;  4XSZ A;  2P5M A;  4ILD A;  1TWA A;  1O2B A;  2GAG C;  3Q3Q A;  4Y7N K;  5IOQ A;  1Y1V K;  2JA6 K;  3GSI A;  4PAB A;  1R9T C;  3H0G K;  3GTK A;  3JST A;  2E2J K;  4C3J C;  2D6F C;  1TWH C;  1VGX A;  4BY1 K;  4X6A K;  3S17 K;  3BUE A;  1SFO C;  4BXX K;  1BJT A;  3VA7 A;  2E2I A;  4LJZ A;  4JK1 A;  1TWF A;  3DXJ A;  1TWC K;  3GTK K;  3I4M C;  3HOZ C;  1K83 C;  3OEP A;  4YFX A;  1I3Q C;  2R7Z A;  4Y52 C;  4A3G C;  4GZY A;  1XZP A;  5C44 K;  2E2H A;  3HOW C;  3GTQ C;  3GEE A;  3GTP C;  3S2H K;  3A8J A;  3M3Y K;  3PO3 C;  1TWF K;  2YU9 A;  3GTJ C;  4QJV B;  1O25 A;  3MML B;  2JA5 A;  2JA7 A;  5IYC K;  4A3C C;  1DCP A;  4KM8 A;  4P5A A;  4YFK A;  2GSO A;  2Y0S L;  2ZUE A;  3FKI K;  2E2H K;  5M5Y K;  1V5V A;  3HOX K;  3ADA C;  3L4J A;  4KMH A;  1VLO A;  1YNN A;  4A3I K;  4G7H A;  4KB4 A;  1GE9 A;  2YU9 K;  5JVO A;  3GTG A;  2R93 K;  1WIH A;  3PO2 K;  1EH1 A;  1I6V A;  4KN7 A;  3GTL C;  4OIR A;  1WCM A;  4GTB A;  4WJ4 A;  5EGH A;  1USO A;  1J98 A;  4BKW A;  1IQ0 A;  2R92 A;  3S14 C;  2PA8 D;  1TWG A;  4O2D A;  3CQZ C;  3S0X A;  1J6W A;  1I50 C;  3A8K A;  5E68 A;  4C2M K;  5C4J C;  2NVT C;  1JQW A;  5TMF A;  4A3D C;  4LQY A;  1ZBS A;  2Y3P A;  2ZUF A;  4A3M K;  1WCM K;  4NOI A;  2CFA A;  2B63 A;  3HKZ D;  2A68 A;  4GTC A;  4RMF A;  2VUM A;  1WOP A;  2WAQ D;  4QIW L;  2R7Z C;  3FHZ A;  3HOY C;  1O2F B;  3N0B A;  1YX2 A;  2PMZ D;  2FQO A;  2RH6 A;  1WOO A;  3HOU C;  2FQT A;  5JFE A;  2GSU A;  3GTO C;  4GTE A;  4XSX A;  3TTG A;  4C45 A;  5IP9 K;  4KC6 A;  4KDD A;  4C3J K;  1DCO A;  1O26 A;  2JA6 A;  1IS1 A;  3H0G A;  4C3I K;  5IP7 C;  2EBB A;  3V4G A;  4BBS K;  5IYD K;  1WQG A;  4A3E K;  3GTG C;  3I4M K;  4G0V A;  3AQP A;  4Y52 K;  3GEH A;  1AB4 A;  4A3F C;  1TWC A;  4BBR K;  4BY7 C;  3TFI A;  3HXA A;  3ORE A;  1VJE A;  2RGR A;  2NVX C;  4KM9 A;  1IW7 A;  1O29 A;  3GTJ K;  1F7V A;  4GTL A;  5HL8 A;  4KAW X;  5IOR A;  3IPJ A;  1EK8 A;  5FLM C;  3RZD C;  4C3H C;  4KAS A;  4KAR A;  4LK1 A;  5D4D A;  5C3E C;  3K7A C;  2B63 C;  2WB1 L;  3I4N C;  2VUM C;  3T02 A;  3FKI A;  3GDZ A;  4A3J C;  3S2D C;  3S1Q C;  2NVY C;  1JVI A;  4A3K C;  3S1N C;  4A93 K;  3AD8 C;  5IYB K;  2R93 A;  5EGE A;  3H3V L;  3GTM C;  2V6S A;  4ZH4 A;  1I50 K;  1I6H K;  3A8I A;  4LK0 A;  1G51 A;  4G0U A;  4Y7N C;  4A3B K;  1Y1V C;  3S1M K;  1XXC A;  4BLA A;  1XZQ B;  5M5X K;  3SZY A;  2E2J C;  4OIO A;  4AYB L;  1WQH A;  1Y1W K;  1B4B A;  5CHP A;  1TWA C;  4QJV A;  4G0W A;  4X6A C;  3S17 C;  4BXX C;  4P5B A;  2V6U A;  1O28 A;  2XCO A;  1JOE A;  1TWC C;  3RZO K;  3GTK C;  4XCH A;  3LAP A;  2NVQ K;  1IL2 A;  2JA8 K;  3HOV K;  1WSR A;  1F93 A;  1VH2 A;  2O5I A;  1XPP A;  2GSN A;  5C44 C;  4AH6 A;  3FOF A;  3M4O K;  1O24 A;  3S2H C;  4KAT A;  2E2I C;  1ZYR A;  1UV7 A;  4A3L C;  1TWF C;  5C4X K;  1IE0 A;  1R9T A;  4XLN A;  5IYC C;  4MQ9 A;  1USM A;  1ZXO A;  1TWH A;  4LOW A;  1SFO A;  3FKI C;  2E2H C;  1EI6 A;  4A3I C;  1EFW A;  5M3M K;  4A3F K;  2YU9 C;  1R9T K;  3S16 C;  3GIR A;  2R93 C;  4P9S A;  4GTF A;  1K83 A;  3T01 A;  2JA7 C;  2JA5 C;  1J6V A;  1I3Q A;  5TJ3 A;  4GFQ A;  2NVX K;  2A6H A;  3SZZ A;  2KWA A;  2GAH C;  1TWH K;  4BLB A;  4LR2 A;  5L46 A;  4DDQ A;  3FOE A;  4J3N A;  1SFO K;  4KMA A;  3GTQ A;  2XCR B;  3GTP A;  1DD5 A;  1F7U A;  1WSV A;  2O5J A;  3AH5 A;  3RZD K;  3GTJ A;  1IBA A;  3HOZ K;  1K83 K;  4KMD A;  1I3Q K;  4A3G K;  3OPF A;  4A3M C;  1YCL A;  1WCM C;  1X31 C;  4XLP A;  3HOW K;  4M1X A;  3GTQ K;  2NVY K;  2CW0 A;  3GTP K;  2R92 C;  1TWG C;  3CAG A;  3N3Y A;  3PO3 K;  1ZVU A;  2V6T A;  3BP3 A;  4A3C K;  3GTM K;  5M5W K;  3GTL A;  1XXB A;  3EQL A;  3AD9 C;  1BGW A;  4QIW D;  4Q5S A;  4G7O A;  3CQZ A;  2P8T A;  1I50 A;  5IP9 C;  3S15 C;  1O2A A;  2A69 A;  4MEX A;  2BE5 A;  1XZP B;  1TWA K;  4FM9 A;  2PA8 L;  1HQM A;  3S1R C;  3GEI A;  3GTL K;  1BDF A;  3L4K A;  3G4A A;  4C3I C;  3G4C A;  1C0A A;  1B4A A;  1Y1W A;  4BBS C;  4WJ3 M;  5IYD C;  4Q4Z A;  3S14 K;  3TFH A;  4A3E C;  3CQZ K;  4GTA A;  5C4J K;  2A6E A;  4KB2 A;  3WOD A;  2NVT K;  5IOT A;  3HKZ L;  3AD7 C;  4GTD A;  4LLG A;  2JA6 C;  4A3D K;  2JH3 A;  1L0W A;  3LAJ A;  3H0G C;  4BBR C;  2WAQ L;  4WIL A;  2E2I K;  2PHC B; 
#chains in the Genus database with same CATH homology
 1J98 A;  1VGX A;  1JVI A;  4XCH A;  1JQW A;  1VH2 A;  1YCL A;  1IE0 A;  1INN A;  2FQT A;  2FQO A;  1JOE A;  1J6V A;  1VJE A;  1J6W A;  5E68 A;  1J6X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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