1XZPB

Structure of the gtp-binding protein trme from thermotoga maritima
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
131
structure length
131
Chain Sequence
HWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
total genus 34
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzpB00
1X31C 1PJ7A 1YX2A 2GAHC 1WORA 1XZPB 3GEHA 3GEEA 3AD8C 3AD9C 1XZPA 3A8IA 3GSIA 3TFIA 5L46A 1WSVA 2GAGC 1WSRA 1VRQC 1XZQB 3ADAC 1PJ5A 4PAAA 1WOOA 1PJ6A 3GIRA 4PABA 3TTGA 4P9SA 3GEIA 1WOSA 3TFHA 3A8KA 1VLOA 3TFJA 3AD7C 1WOPA 1XZQA 3A8JA 1V5VA
chains in the Genus database with same CATH superfamily
1B4AA 4A3DC 2Y0SL 4KN4A 2R7ZC 5C44K 4A3MC 4YFKA 3GTGA 1WIHA 3AD8C 1XXAA 3S1MK 5TMFA 3HOWK 4WILA 1VGXA 3ADAC 3NUHA 3FHZA 4XCHA 4A3GK 2NVQC 3I4NK 1B4BA 5IP7C 1WOPA 4GTFA 1IBAA 3CQZC 4C3JK 2E2IA 1X31C 3GTMA 4A3KC 1J98A 1HQMA 3EQLA 1SFOC 1INNA 1TWHK 4WJ4A 2NVQK 3GEEA 4RMFA 4OIOA 3T00A 3H3VL 3BP8C 3S14C 4A3EK 1TWHA 4KDDA 4KARA 5HL8A 1J6XA 3LPXA 2JA6C 4A3CK 4KMAA 1I6HK 4FM9A 2VUMA 1TWGA 2WAQL 4DDQA 3GTMC 4AYBD 1RU0A 4C3IK 4KMUA 1BGWA 1O24A 1WCMC 2JA7C 4Y52K 1IE0A 3RZOK 5IOQA 1DCHA 2B63C 2GSUA 3GTQC 1USOA 1USMA 4KB2A 1VRQC 2WAQD 1K83A 1IL2A 4BLBA 1R9TA 3GEIA 4X6AK 1I50K 5IYCK 1K83K 3RZDK 2A68A 2O5IA 4GFQA 1R9TK 3M3YK 1I50A 2R93C 3AQOA 4KASA 1L0WA 4GTBA 4Q4ZA 1Y1WK 3GSIA 5CJ9A 5EGHA 3GTGC 1TWCK 2JA5K 3S15C 4A3FK 3S1RC 2R7ZA 4C2MK 2B63K 1WQHA 1C0AA 1TWGK 4C3HK 2E2HC 2E2HK 2YU9A 3GTOC 3GTOK 4G0UA 3FKIC 4WJ3M 3OREA 1BS2A 3I4MC 3PO2K 1GE9A 5IP9C 2XCRB 4AYBL 4GTLA 4ILDA 3AD9C 3K7AK 3N0CA 1ZBSA 1IS1A 4GZYA 1DCPA 3HOXC 1WOOA 4YFNA 3GTPK 4XSXA 1TWHC 5TJ3A 1TWCC 1XXBA 4GTAA 1F7UA 2CFAA 3A8JA 2VUMK 4XLNA 5IOTA 3IPJA 3Q3QA 3G4CA 4QIWL 1ZXOA 2NVTK 4A3BK 1HI9A 3N0BA 1K83C 4KM8A 1O29A 1UV7A 1JVIA 4A93C 2O5JA 5M5XK 5C44C 3GIRA 4A3MK 2NVYC 4A3JC 3TFHA 2JA6A 4BBRK 2NVXC 3A8KA 4KM9A 2RGRA 4QIWD 4BY1C 1O2BA 3H3VD 2FQOA 3M3YC 1JQWA 3WODA 4A3GC 4BBSK 4BBSC 1Y1VK 3GTKK 1SFOA 3VA7A 3S16C 2R92A 3QX3A 1EI6A 4O2DA 2E2IC 3T01A 5FLMK 4ZH4A 2XCOA 4P5AA 3GTLA 3PO2C 4JK1A 2GSOA 5IP9K 1PJ6A 4A3DK 4XLPA 3AD7C 1XZQA 5FJ8K 5EGEA 1PJ7A 1G51A 1WCMK 2FQTA 4GTDA 3S15K 1WQFA 1DD5A 3S17C 3S2HK 2JA5C 4C45A 3TFIA 2JA8C 1I3QA 3M4OK 2NVXA 4KMHA 1O27A 3I4NC 3SZYA 5TMCA 5FLMC 1YNNA 2NVYA 2PA8L 1R9TC 4MEXA 2R93A 3S1MC 5C4XC 2V6SA 4YFXA 2A6EA 2R92C 3GDZA 2YU9C 2E2HA 4G0VA 3MMLB 3HOUK 2R7ZK 2NVXK 2GSNA 1SMYA 4MQ9A 2NVYK 3A8IA 4KAWX 5L46A 5E68A 2A69A 2D6FC 1WSRA 2PMZD 5C4JK 1PJ5A 1TWAK 3HXAA 5M5YK 3OPFA 4BY7C 2WB1L 3GTMK 5IYDK 2E2JK 4BXXK 4Y7NC 4BBRC 2NVTC 1IQ0A 3TFJA 1TWFK 1TWFC 5IYBC 3GTJA 2VUMC 1I6VA 5IYDC 2PMZL 4GTCA 2E2JC 4BXXC 3S14K 4A3LK 3DXJA 3FOFA 4A3BC 3PO3C 3N3YA 2PA8D 2ZUEA 1SFOK 1TWFA 4A3KK 4KMDA 3K7AC 3H0GA 3AH5A 5M3FK 2V6UA 1VLOA 4OIRA 3GTQK 5JVOA 4G7HA 3GEHA 3FOEA 3HOZK 3SZZA 3T02A 1I50C 4MEYA 4Q5SA 3CAGA 3LAPA 1BJTA 4KN7A 4LLGA 1XZQB 3L4KA 3OEPA 2CW0A 2JH3A 4PAAA 5C3EK 4LK0A 1Y1WC 1ZVUA 4OIPA 3GTPA 4GTEA 4P5BA 4QJVB 4OIQA 3HOVC 5IORA 4BLAA 4G7OA 3BP3A 4FZBA 4C2MC 2KWAA 5CHPA 1XZPB 2ZFZA 4C3IC 1IW7A 2JA5A 1TWCA 2W7VA 5M5WK 1EH1A 4A3IC 3HOYK 5IP7K 2P8TA 4GT9A 3S1NK 4LOWA 4NOIA 4LQYA 1AB4A 3S16K 5C4XK 3TTGA 1Y1VC 1DCOA 3GTKC 2E2IK 3GTQA 4A3EC 2B63A 3H0GK 1J6VA 1EK8A 3G4AA 1KQ4A 3FKIA 3S17K 1EQRA 3GTJC 3S2HC 1Y1VA 3GTKA 4A93K 3H0GC 3S1QC 2ZUFA 4J3NA 4A3CC 4Y52C 2JA7K 1Y1WA 4BKWA 3HOWC 5IYCC 3RZDC 1J6WA 1O2FB 1JOEA 1O28A 3LAJA 3S1NC 1WOSA 3GTJK 5IYBK 1TWAA 1I6HC 5JFEA 1ZYRA 2Y3PA 5IOSA 1YNJA 1F9NA 1O25A 1YX2A 5M3MK 4Y7NK 2JA6K 3GTLC 2JA7A 3GTPC 2CFAB 1XZPA 4YG2A 3V4GA 5C4JC 3HOVK 4KATA 2WB1D 4BY1K 4G0WA 2GAGC 1O2AA 4AH6A 2A6HA 3JSTA 5C3EC 2P5MA 3L4JA 1WQGA 3HOYC 4A3JK 4A3IK 1BDFA 3I4MK 1I3QC 4LK1A 4KB4A 4LR2A 2GAHC 2PHCB 2PPBA 1ZQ1C 2EBBA 1TWGC 3HKZD 4C3HC 1XPPA 5D4DA 1ISEA 3CQZA 3ERED 3M4OC 3S1QK 1WSVA 4M1XA 3GTGK 1VH2A 2BE5A 4OINA 1YCLA 3S1RK 4C3JC 4QJVA 3CQZK 4XSZA 4PABA 4BY7K 3HOUC 1TWAC 2YU9K 3GTOA 4G7ZA 1O26A 4A3LC 2R93K 1EFWA 1V5VA 3HOZC 3HOXK 3S0XA 1WORA 1XXCA 4KC6A 3GTLK 2V6TA 4X6AC 1I3QK 4LJZA 2XCQA 3S2DK 1F93A 3S2DC 2Y0SD 3AQPA 2JA8K 1VJEA 2R92K 3FKIK 3PO3K 1WCMA 4P9SA 3RZOC 3BUEA 2RH6A 4A3FC 3HKZL 1F7VA
chains in the Genus database with same CATH topology
1X31C 1PJ7A 1YX2A 2GAHC 1WORA 1XZPB 3GEHA 3GEEA 3AD8C 3AD9C 1XZPA 3A8IA 3GSIA 3TFIA 5L46A 1WSVA 2GAGC 1WSRA 1VRQC 1XZQB 3ADAC 1PJ5A 4PAAA 1WOOA 1PJ6A 3GIRA 4PABA 3TTGA 4P9SA 3GEIA 1WOSA 3TFHA 3A8KA 1VLOA 3TFJA 3AD7C 1WOPA 1XZQA 3A8JA 1V5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X31 C;  1PJ7 A;  1YX2 A;  2GAH C;  1WOR A;  1XZP B;  3GEH A;  3GEE A;  3AD8 C;  3AD9 C;  1XZP A;  3A8I A;  3GSI A;  3TFI A;  5L46 A;  1WSV A;  2GAG C;  1WSR A;  1VRQ C;  1XZQ B;  3ADA C;  1PJ5 A;  4PAA A;  1WOO A;  1PJ6 A;  3GIR A;  4PAB A;  3TTG A;  4P9S A;  3GEI A;  1WOS A;  3TFH A;  3A8K A;  1VLO A;  3TFJ A;  3AD7 C;  1WOP A;  1XZQ A;  3A8J A;  1V5V A; 
#chains in the Genus database with same CATH topology
 1B4A A;  4A3D C;  2Y0S L;  4KN4 A;  2R7Z C;  5C44 K;  4A3M C;  4YFK A;  3GTG A;  1WIH A;  3AD8 C;  1XXA A;  3S1M K;  5TMF A;  3HOW K;  4WIL A;  1VGX A;  3ADA C;  3NUH A;  3FHZ A;  4XCH A;  4A3G K;  2NVQ C;  3I4N K;  1B4B A;  5IP7 C;  1WOP A;  4GTF A;  1IBA A;  3CQZ C;  4C3J K;  2E2I A;  1X31 C;  3GTM A;  4A3K C;  1J98 A;  1HQM A;  3EQL A;  1SFO C;  1INN A;  1TWH K;  4WJ4 A;  2NVQ K;  3GEE A;  4RMF A;  4OIO A;  3T00 A;  3H3V L;  3BP8 C;  3S14 C;  4A3E K;  1TWH A;  4KDD A;  4KAR A;  5HL8 A;  1J6X A;  3LPX A;  2JA6 C;  4A3C K;  4KMA A;  1I6H K;  4FM9 A;  2VUM A;  1TWG A;  2WAQ L;  4DDQ A;  3GTM C;  4AYB D;  1RU0 A;  4C3I K;  4KMU A;  1BGW A;  1O24 A;  1WCM C;  2JA7 C;  4Y52 K;  1IE0 A;  3RZO K;  5IOQ A;  1DCH A;  2B63 C;  2GSU A;  3GTQ C;  1USO A;  1USM A;  4KB2 A;  1VRQ C;  2WAQ D;  1K83 A;  1IL2 A;  4BLB A;  1R9T A;  3GEI A;  4X6A K;  1I50 K;  5IYC K;  1K83 K;  3RZD K;  2A68 A;  2O5I A;  4GFQ A;  1R9T K;  3M3Y K;  1I50 A;  2R93 C;  3AQO A;  4KAS A;  1L0W A;  4GTB A;  4Q4Z A;  1Y1W K;  3GSI A;  5CJ9 A;  5EGH A;  3GTG C;  1TWC K;  2JA5 K;  3S15 C;  4A3F K;  3S1R C;  2R7Z A;  4C2M K;  2B63 K;  1WQH A;  1C0A A;  1TWG K;  4C3H K;  2E2H C;  2E2H K;  2YU9 A;  3GTO C;  3GTO K;  4G0U A;  3FKI C;  4WJ3 M;  3ORE A;  1BS2 A;  3I4M C;  3PO2 K;  1GE9 A;  5IP9 C;  2XCR B;  4AYB L;  4GTL A;  4ILD A;  3AD9 C;  3K7A K;  3N0C A;  1ZBS A;  1IS1 A;  4GZY A;  1DCP A;  3HOX C;  1WOO A;  4YFN A;  3GTP K;  4XSX A;  1TWH C;  5TJ3 A;  1TWC C;  1XXB A;  4GTA A;  1F7U A;  2CFA A;  3A8J A;  2VUM K;  4XLN A;  5IOT A;  3IPJ A;  3Q3Q A;  3G4C A;  4QIW L;  1ZXO A;  2NVT K;  4A3B K;  1HI9 A;  3N0B A;  1K83 C;  4KM8 A;  1O29 A;  1UV7 A;  1JVI A;  4A93 C;  2O5J A;  5M5X K;  5C44 C;  3GIR A;  4A3M K;  2NVY C;  4A3J C;  3TFH A;  2JA6 A;  4BBR K;  2NVX C;  3A8K A;  4KM9 A;  2RGR A;  4QIW D;  4BY1 C;  1O2B A;  3H3V D;  2FQO A;  3M3Y C;  1JQW A;  3WOD A;  4A3G C;  4BBS K;  4BBS C;  1Y1V K;  3GTK K;  1SFO A;  3VA7 A;  3S16 C;  2R92 A;  3QX3 A;  1EI6 A;  4O2D A;  2E2I C;  3T01 A;  5FLM K;  4ZH4 A;  2XCO A;  4P5A A;  3GTL A;  3PO2 C;  4JK1 A;  2GSO A;  5IP9 K;  1PJ6 A;  4A3D K;  4XLP A;  3AD7 C;  1XZQ A;  5FJ8 K;  5EGE A;  1PJ7 A;  1G51 A;  1WCM K;  2FQT A;  4GTD A;  3S15 K;  1WQF A;  1DD5 A;  3S17 C;  3S2H K;  2JA5 C;  4C45 A;  3TFI A;  2JA8 C;  1I3Q A;  3M4O K;  2NVX A;  4KMH A;  1O27 A;  3I4N C;  3SZY A;  5TMC A;  5FLM C;  1YNN A;  2NVY A;  2PA8 L;  1R9T C;  4MEX A;  2R93 A;  3S1M C;  5C4X C;  2V6S A;  4YFX A;  2A6E A;  2R92 C;  3GDZ A;  2YU9 C;  2E2H A;  4G0V A;  3MML B;  3HOU K;  2R7Z K;  2NVX K;  2GSN A;  1SMY A;  4MQ9 A;  2NVY K;  3A8I A;  4KAW X;  5L46 A;  5E68 A;  2A69 A;  2D6F C;  1WSR A;  2PMZ D;  5C4J K;  1PJ5 A;  1TWA K;  3HXA A;  5M5Y K;  3OPF A;  4BY7 C;  2WB1 L;  3GTM K;  5IYD K;  2E2J K;  4BXX K;  4Y7N C;  4BBR C;  2NVT C;  1IQ0 A;  3TFJ A;  1TWF K;  1TWF C;  5IYB C;  3GTJ A;  2VUM C;  1I6V A;  5IYD C;  2PMZ L;  4GTC A;  2E2J C;  4BXX C;  3S14 K;  4A3L K;  3DXJ A;  3FOF A;  4A3B C;  3PO3 C;  3N3Y A;  2PA8 D;  2ZUE A;  1SFO K;  1TWF A;  4A3K K;  4KMD A;  3K7A C;  3H0G A;  3AH5 A;  5M3F K;  2V6U A;  1VLO A;  4OIR A;  3GTQ K;  5JVO A;  4G7H A;  3GEH A;  3FOE A;  3HOZ K;  3SZZ A;  3T02 A;  1I50 C;  4MEY A;  4Q5S A;  3CAG A;  3LAP A;  1BJT A;  4KN7 A;  4LLG A;  1XZQ B;  3L4K A;  3OEP A;  2CW0 A;  2JH3 A;  4PAA A;  5C3E K;  4LK0 A;  1Y1W C;  1ZVU A;  4OIP A;  3GTP A;  4GTE A;  4P5B A;  4QJV B;  4OIQ A;  3HOV C;  5IOR A;  4BLA A;  4G7O A;  3BP3 A;  4FZB A;  4C2M C;  2KWA A;  5CHP A;  1XZP B;  2ZFZ A;  4C3I C;  1IW7 A;  2JA5 A;  1TWC A;  2W7V A;  5M5W K;  1EH1 A;  4A3I C;  3HOY K;  5IP7 K;  2P8T A;  4GT9 A;  3S1N K;  4LOW A;  4NOI A;  4LQY A;  1AB4 A;  3S16 K;  5C4X K;  3TTG A;  1Y1V C;  1DCO A;  3GTK C;  2E2I K;  3GTQ A;  4A3E C;  2B63 A;  3H0G K;  1J6V A;  1EK8 A;  3G4A A;  1KQ4 A;  3FKI A;  3S17 K;  1EQR A;  3GTJ C;  3S2H C;  1Y1V A;  3GTK A;  4A93 K;  3H0G C;  3S1Q C;  2ZUF A;  4J3N A;  4A3C C;  4Y52 C;  2JA7 K;  1Y1W A;  4BKW A;  3HOW C;  5IYC C;  3RZD C;  1J6W A;  1O2F B;  1JOE A;  1O28 A;  3LAJ A;  3S1N C;  1WOS A;  3GTJ K;  5IYB K;  1TWA A;  1I6H C;  5JFE A;  1ZYR A;  2Y3P A;  5IOS A;  1YNJ A;  1F9N A;  1O25 A;  1YX2 A;  5M3M K;  4Y7N K;  2JA6 K;  3GTL C;  2JA7 A;  3GTP C;  2CFA B;  1XZP A;  4YG2 A;  3V4G A;  5C4J C;  3HOV K;  4KAT A;  2WB1 D;  4BY1 K;  4G0W A;  2GAG C;  1O2A A;  4AH6 A;  2A6H A;  3JST A;  5C3E C;  2P5M A;  3L4J A;  1WQG A;  3HOY C;  4A3J K;  4A3I K;  1BDF A;  3I4M K;  1I3Q C;  4LK1 A;  4KB4 A;  4LR2 A;  2GAH C;  2PHC B;  2PPB A;  1ZQ1 C;  2EBB A;  1TWG C;  3HKZ D;  4C3H C;  1XPP A;  5D4D A;  1ISE A;  3CQZ A;  3ERE D;  3M4O C;  3S1Q K;  1WSV A;  4M1X A;  3GTG K;  1VH2 A;  2BE5 A;  4OIN A;  1YCL A;  3S1R K;  4C3J C;  4QJV A;  3CQZ K;  4XSZ A;  4PAB A;  4BY7 K;  3HOU C;  1TWA C;  2YU9 K;  3GTO A;  4G7Z A;  1O26 A;  4A3L C;  2R93 K;  1EFW A;  1V5V A;  3HOZ C;  3HOX K;  3S0X A;  1WOR A;  1XXC A;  4KC6 A;  3GTL K;  2V6T A;  4X6A C;  1I3Q K;  4LJZ A;  2XCQ A;  3S2D K;  1F93 A;  3S2D C;  2Y0S D;  3AQP A;  2JA8 K;  1VJE A;  2R92 K;  3FKI K;  3PO3 K;  1WCM A;  4P9S A;  3RZO C;  3BUE A;  2RH6 A;  4A3F C;  3HKZ L;  1F7V A; 
#chains in the Genus database with same CATH homology
 1X31 C;  1PJ7 A;  1YX2 A;  2GAH C;  1WOR A;  1XZP B;  3GEH A;  3GEE A;  3AD8 C;  3AD9 C;  1XZP A;  3A8I A;  3GSI A;  3TFI A;  5L46 A;  1WSV A;  2GAG C;  1WSR A;  1VRQ C;  1XZQ B;  3ADA C;  1PJ5 A;  4PAA A;  1WOO A;  1PJ6 A;  3GIR A;  4PAB A;  3TTG A;  4P9S A;  3GEI A;  1WOS A;  3TFH A;  3A8K A;  1VLO A;  3TFJ A;  3AD7 C;  1WOP A;  1XZQ A;  3A8J A;  1V5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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