1XZPB

Structure of the gtp-binding protein trme from thermotoga maritima
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
131
structure length
131
Chain Sequence
HWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 34
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzpB00
1V5VA 1WOSA 3GEEA 1VRQC 3TFJA 3GEHA 1X31C 1PJ6A 3AD7C 3A8KA 1WSRA 1WOOA 3TFHA 1VLOA 4P9SA 1WORA 3TFIA 3A8JA 1PJ7A 3GIRA 3AD9C 3GSIA 1XZPA 1YX2A 1XZPB 3AD8C 1WSVA 4PAAA 1PJ5A 2GAHC 3TTGA 1WOPA 1XZQB 1XZQA 3ADAC 4PABA 3GEIA 5L46A 2GAGC 3A8IA
chains in the Genus database with same CATH superfamily
3GTPA 4A3JC 4BKWA 1SFOK 2E2HC 3GTOK 5HL8A 2R7ZK 3PO3C 4Q5SA 4C3HK 4BY1K 2A6HA 2O5JA 3HOXC 2B63A 3L4KA 1TWHC 1TWCC 3EQLA 1O24A 2Y0SD 4WJ3M 4YFKA 1SFOC 3GTOC 1WOPA 2R7ZC 2Y0SL 4G0UA 1TWCA 4GT9A 1TWGK 4C3HC 1J6VA 1F9NA 1SFOA 4A93K 4A3IK 2XCQA 1WOSA 4YG2A 5C3EK 3HOYK 2FQTA 5C44K 2JA5A 3BUEA 2JH3A 1ZQ1C 1VLOA 1TWGC 4QIWD 2EBBA 4WJ4A 3AH5A 4A93C 4QIWL 4A3IC 4A3KK 4M1XA 1XZPA 1XZPB 3M3YK 4LK0A 5C3EC 4PAAA 3HOYC 3G4AA 5EGEA 5C44C 4KASA 5M5WK 4KARA 2ZUEA 4XSXA 1WQFA 3Q3QA 1BDFA 2Y3PA 3GTGK 2PPBA 3M3YC 3AQPA 4P5BA 3PO2K 4MQ9A 1K83A 4LJZA 4NOIA 3CAGA 2P8TA 1EK8A 4LK1A 1DCHA 4GTBA 3GTGC 3DXJA 3ERED 1DCOA 3PO2C 1BS2A 1O26A 4A3LK 3S0XA 3AQOA 4BBSK 5M3FK 2NVQK 3SZZA 3H0GK 2PHCB 5IOQA 3A8KA 3H3VD 1B4BA 4XLNA 3GTJA 3MMLB 3H3VL 4KMUA 4A3LC 4GTDA 4BBSC 2A69A 2NVQC 3GDZA 2R93K 1O29A 4FZBA 3H0GC 1XZQA 4YFXA 5IP7K 3G4CA 3BP3A 4LR2A 5L46A 2VUMK 5IP9K 5JVOA 3S17K 1IBAA 1VGXA 3T01A 4KN4A 2WAQD 4KAWX 4KMDA 2R93C 4WILA 5IP7C 2WAQL 3TFIA 1ZVUA 2VUMC 3S17C 5IP9C 2NVXC 2V6SA 1F7UA 5M3MK 1TWFK 3TTGA 5C4JK 2XCRB 5C4XK 5IYDK 4C3IK 1BGWA 1IL2A 2GAGC 3A8IA 1IE0A 1IS1A 1YNNA 4GFQA 3M4OK 1TWFC 5TMCA 2JA6K 3S15K 5C4JC 4P9SA 1AB4A 1VH2A 1WORA 3WODA 5C4XC 5IYDC 4C3IC 3S1MK 2E2HA 4G0WA 1I50K 3FOFA 4KB2A 1RU0A 1Y1WK 1C0AA 4BLBA 1O28A 4LOWA 1F93A 3M4OC 5E68A 2JA6C 1TWHA 4G0VA 3S15C 3T02A 4KC6A 4MEYA 1B4AA 1TWAK 3FKIK 3S1MC 3GTOA 1I50C 2R7ZA 1KQ4A 3RZOK 4AH6A 1Y1WC 1YNJA 4AYBD 4A3DK 1I50A 4KM8A 3RZDC 4ILDA 3LAJA 3HOUK 2E2IK 1PJ7A 4AYBL 2XCOA 3HOWK 1Y1VK 1TWAC 3FKIC 1GE9A 1TWGA 4KM9A 3RZOC 3CQZK 1TWAA 4XCHA 4A3DC 5IYBK 3HOUC 2E2IC 2RH6A 4RMFA 3HOWC 1VRQC 1Y1VC 4G7ZA 3TFJA 1EI6A 1HI9A 1YCLA 3S14K 1JVIA 3K7AK 3AD7C 3CQZC 3TFHA 5D4DA 5IOTA 1R9TK 3OREA 4LLGA 2V6TA 5IYBC 1XXCA 4O2DA 3CQZA 4LQYA 5M5YK 2NVTK 2NVYK 2GAHC 4A3GK 1JQWA 4OIPA 1ISEA 3I4MK 4DDQA 5IORA 1DD5A 3S14C 3K7AC 3IPJA 1O2FB 1R9TC 3GTGA 3GEEA 4GTLA 2NVTC 4J3NA 2NVYC 2JA7K 1X31C 1EH1A 1O2AA 4A3GC 4X6AK 2A68A 3I4MC 2E2JK 1EFWA 2CFAB 4YFNA 5CJ9A 3S1RK 1J6WA 1O27A 4OIOA 2JA7C 5IOSA 4X6AC 3GTKK 1XXAA 2FQOA 2E2JC 4GZYA 1EQRA 3H0GA 3GTQK 1VJEA 2NVXK 4Q4ZA 3S1RC 2R92K 3N3YA 2W7VA 4C45A 4BBRK 1I3QK 3S16K 3I4NK 1WQHA 1USOA 1I6HK 3S1QK 3GTKC 4P5AA 3GIRA 5TJ3A 2R93A 2D6FC 3GTQC 3GTMK 2R92C 2VUMA 4BBRC 1I3QC 4FM9A 3FHZA 3S16C 3I4NC 1I6HC 2GSOA 3S1QC 2NVXA 5JFEA 3N0BA 4GTFA 1V5VA 1J98A 4A3EK 2CW0A 3GTMC 1I6VA 4BXXK 1TWFA 5EGHA 4OIQA 2B63K 3S2DK 1XPPA 3GTLK 1PJ5A 1IW7A 2GSNA 4A3EC 4KB4A 2YU9K 3RZDK 3HXAA 3GEIA 2JA8C 4KN7A 4BXXC 1ZYRA 2JA6A 1UV7A 2B63C 1WCMK 3S2DC 3GTLC 4GTEA 1PJ6A 3OPFA 2YU9C 2JA5K 4QJVA 4QJVB 3A8JA 3GTLA 1Y1WA 3SZYA 3AD9C 1YX2A 4KDDA 4MEXA 2YU9A 1XXBA 1WCMC 3JSTA 5FJ8K 4BY1C 3FKIA 2P5MA 2BE5A 3OEPA 2JA5C 3V4GA 1WCMA 3L4JA 1JOEA 3HOZK 1SMYA 4KATA 3HOVK 4A3FK 4Y7NK 3NUHA 5CHPA 2E2IA 4ZH4A 1G51A 4GTCA 1Y1VA 3LPXA 1K83K 4A3BK 4XLPA 1BJTA 3VA7A 3HOZC 3AD8C 1WQGA 3N0CA 4C3JK 3HOVC 4GTAA 4A3FC 4Y7NC 2ZFZA 2PMZD 3FOEA 1DCPA 1K83C 1USMA 2RGRA 4A3BC 4A3KC 2PMZL 2KWAA 4C3JC 1R9TA 5FLMK 3HKZD 3S2HK 4BLAA 1F7VA 2CFAA 2NVYA 3HKZL 3GTJK 1WIHA 1ZXOA 4C2MK 1HQMA 4PABA 5FLMC 3S2HC 1O2BA 3LAPA 2JA7A 3GTJC 2V6UA 1IQ0A 4C2MC 4G7HA 1O25A 4BY7K 4OINA 3BP8C 4Y52K 4KMAA 4G7OA 1WSVA 1L0WA 2GSUA 3GTKA 5IYCK 1XZQB 2ZUFA 3ADAC 1ZBSA 4BY7C 2WB1D 1J6XA 1WOOA 3GTQA 2PA8D 4A3CK 3T00A 4XSZA 2O5IA 2R92A 4Y52C 2WB1L 1I3QA 2PA8L 3GTPK 3GEHA 5IYCC 4A3MK 1WSRA 2A6EA 3S1NK 4A3JK 4OIRA 4KMHA 2JA8K 5TMFA 3GSIA 3QX3A 4A3CC 2E2HK 3GTMA 3PO3K 4JK1A 3GTPC 1INNA 3HOXK 4A3MC 5M5XK 3S1NC 1TWHK 1TWCK
chains in the Genus database with same CATH topology
1V5VA 1WOSA 3GEEA 1VRQC 3TFJA 3GEHA 1X31C 1PJ6A 3AD7C 3A8KA 1WSRA 1WOOA 3TFHA 1VLOA 4P9SA 1WORA 3TFIA 3A8JA 1PJ7A 3GIRA 3AD9C 3GSIA 1XZPA 1YX2A 1XZPB 3AD8C 1WSVA 4PAAA 1PJ5A 2GAHC 3TTGA 1WOPA 1XZQB 1XZQA 3ADAC 4PABA 3GEIA 5L46A 2GAGC 3A8IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V5V A;  1WOS A;  3GEE A;  1VRQ C;  3TFJ A;  3GEH A;  1X31 C;  1PJ6 A;  3AD7 C;  3A8K A;  1WSR A;  1WOO A;  3TFH A;  1VLO A;  4P9S A;  1WOR A;  3TFI A;  3A8J A;  1PJ7 A;  3GIR A;  3AD9 C;  3GSI A;  1XZP A;  1YX2 A;  1XZP B;  3AD8 C;  1WSV A;  4PAA A;  1PJ5 A;  2GAH C;  3TTG A;  1WOP A;  1XZQ B;  1XZQ A;  3ADA C;  4PAB A;  3GEI A;  5L46 A;  2GAG C;  3A8I A; 
#chains in the Genus database with same CATH topology
 3GTP A;  4A3J C;  4BKW A;  1SFO K;  2E2H C;  3GTO K;  5HL8 A;  2R7Z K;  3PO3 C;  4Q5S A;  4C3H K;  4BY1 K;  2A6H A;  2O5J A;  3HOX C;  2B63 A;  3L4K A;  1TWH C;  1TWC C;  3EQL A;  1O24 A;  2Y0S D;  4WJ3 M;  4YFK A;  1SFO C;  3GTO C;  1WOP A;  2R7Z C;  2Y0S L;  4G0U A;  1TWC A;  4GT9 A;  1TWG K;  4C3H C;  1J6V A;  1F9N A;  1SFO A;  4A93 K;  4A3I K;  2XCQ A;  1WOS A;  4YG2 A;  5C3E K;  3HOY K;  2FQT A;  5C44 K;  2JA5 A;  3BUE A;  2JH3 A;  1ZQ1 C;  1VLO A;  1TWG C;  4QIW D;  2EBB A;  4WJ4 A;  3AH5 A;  4A93 C;  4QIW L;  4A3I C;  4A3K K;  4M1X A;  1XZP A;  1XZP B;  3M3Y K;  4LK0 A;  5C3E C;  4PAA A;  3HOY C;  3G4A A;  5EGE A;  5C44 C;  4KAS A;  5M5W K;  4KAR A;  2ZUE A;  4XSX A;  1WQF A;  3Q3Q A;  1BDF A;  2Y3P A;  3GTG K;  2PPB A;  3M3Y C;  3AQP A;  4P5B A;  3PO2 K;  4MQ9 A;  1K83 A;  4LJZ A;  4NOI A;  3CAG A;  2P8T A;  1EK8 A;  4LK1 A;  1DCH A;  4GTB A;  3GTG C;  3DXJ A;  3ERE D;  1DCO A;  3PO2 C;  1BS2 A;  1O26 A;  4A3L K;  3S0X A;  3AQO A;  4BBS K;  5M3F K;  2NVQ K;  3SZZ A;  3H0G K;  2PHC B;  5IOQ A;  3A8K A;  3H3V D;  1B4B A;  4XLN A;  3GTJ A;  3MML B;  3H3V L;  4KMU A;  4A3L C;  4GTD A;  4BBS C;  2A69 A;  2NVQ C;  3GDZ A;  2R93 K;  1O29 A;  4FZB A;  3H0G C;  1XZQ A;  4YFX A;  5IP7 K;  3G4C A;  3BP3 A;  4LR2 A;  5L46 A;  2VUM K;  5IP9 K;  5JVO A;  3S17 K;  1IBA A;  1VGX A;  3T01 A;  4KN4 A;  2WAQ D;  4KAW X;  4KMD A;  2R93 C;  4WIL A;  5IP7 C;  2WAQ L;  3TFI A;  1ZVU A;  2VUM C;  3S17 C;  5IP9 C;  2NVX C;  2V6S A;  1F7U A;  5M3M K;  1TWF K;  3TTG A;  5C4J K;  2XCR B;  5C4X K;  5IYD K;  4C3I K;  1BGW A;  1IL2 A;  2GAG C;  3A8I A;  1IE0 A;  1IS1 A;  1YNN A;  4GFQ A;  3M4O K;  1TWF C;  5TMC A;  2JA6 K;  3S15 K;  5C4J C;  4P9S A;  1AB4 A;  1VH2 A;  1WOR A;  3WOD A;  5C4X C;  5IYD C;  4C3I C;  3S1M K;  2E2H A;  4G0W A;  1I50 K;  3FOF A;  4KB2 A;  1RU0 A;  1Y1W K;  1C0A A;  4BLB A;  1O28 A;  4LOW A;  1F93 A;  3M4O C;  5E68 A;  2JA6 C;  1TWH A;  4G0V A;  3S15 C;  3T02 A;  4KC6 A;  4MEY A;  1B4A A;  1TWA K;  3FKI K;  3S1M C;  3GTO A;  1I50 C;  2R7Z A;  1KQ4 A;  3RZO K;  4AH6 A;  1Y1W C;  1YNJ A;  4AYB D;  4A3D K;  1I50 A;  4KM8 A;  3RZD C;  4ILD A;  3LAJ A;  3HOU K;  2E2I K;  1PJ7 A;  4AYB L;  2XCO A;  3HOW K;  1Y1V K;  1TWA C;  3FKI C;  1GE9 A;  1TWG A;  4KM9 A;  3RZO C;  3CQZ K;  1TWA A;  4XCH A;  4A3D C;  5IYB K;  3HOU C;  2E2I C;  2RH6 A;  4RMF A;  3HOW C;  1VRQ C;  1Y1V C;  4G7Z A;  3TFJ A;  1EI6 A;  1HI9 A;  1YCL A;  3S14 K;  1JVI A;  3K7A K;  3AD7 C;  3CQZ C;  3TFH A;  5D4D A;  5IOT A;  1R9T K;  3ORE A;  4LLG A;  2V6T A;  5IYB C;  1XXC A;  4O2D A;  3CQZ A;  4LQY A;  5M5Y K;  2NVT K;  2NVY K;  2GAH C;  4A3G K;  1JQW A;  4OIP A;  1ISE A;  3I4M K;  4DDQ A;  5IOR A;  1DD5 A;  3S14 C;  3K7A C;  3IPJ A;  1O2F B;  1R9T C;  3GTG A;  3GEE A;  4GTL A;  2NVT C;  4J3N A;  2NVY C;  2JA7 K;  1X31 C;  1EH1 A;  1O2A A;  4A3G C;  4X6A K;  2A68 A;  3I4M C;  2E2J K;  1EFW A;  2CFA B;  4YFN A;  5CJ9 A;  3S1R K;  1J6W A;  1O27 A;  4OIO A;  2JA7 C;  5IOS A;  4X6A C;  3GTK K;  1XXA A;  2FQO A;  2E2J C;  4GZY A;  1EQR A;  3H0G A;  3GTQ K;  1VJE A;  2NVX K;  4Q4Z A;  3S1R C;  2R92 K;  3N3Y A;  2W7V A;  4C45 A;  4BBR K;  1I3Q K;  3S16 K;  3I4N K;  1WQH A;  1USO A;  1I6H K;  3S1Q K;  3GTK C;  4P5A A;  3GIR A;  5TJ3 A;  2R93 A;  2D6F C;  3GTQ C;  3GTM K;  2R92 C;  2VUM A;  4BBR C;  1I3Q C;  4FM9 A;  3FHZ A;  3S16 C;  3I4N C;  1I6H C;  2GSO A;  3S1Q C;  2NVX A;  5JFE A;  3N0B A;  4GTF A;  1V5V A;  1J98 A;  4A3E K;  2CW0 A;  3GTM C;  1I6V A;  4BXX K;  1TWF A;  5EGH A;  4OIQ A;  2B63 K;  3S2D K;  1XPP A;  3GTL K;  1PJ5 A;  1IW7 A;  2GSN A;  4A3E C;  4KB4 A;  2YU9 K;  3RZD K;  3HXA A;  3GEI A;  2JA8 C;  4KN7 A;  4BXX C;  1ZYR A;  2JA6 A;  1UV7 A;  2B63 C;  1WCM K;  3S2D C;  3GTL C;  4GTE A;  1PJ6 A;  3OPF A;  2YU9 C;  2JA5 K;  4QJV A;  4QJV B;  3A8J A;  3GTL A;  1Y1W A;  3SZY A;  3AD9 C;  1YX2 A;  4KDD A;  4MEX A;  2YU9 A;  1XXB A;  1WCM C;  3JST A;  5FJ8 K;  4BY1 C;  3FKI A;  2P5M A;  2BE5 A;  3OEP A;  2JA5 C;  3V4G A;  1WCM A;  3L4J A;  1JOE A;  3HOZ K;  1SMY A;  4KAT A;  3HOV K;  4A3F K;  4Y7N K;  3NUH A;  5CHP A;  2E2I A;  4ZH4 A;  1G51 A;  4GTC A;  1Y1V A;  3LPX A;  1K83 K;  4A3B K;  4XLP A;  1BJT A;  3VA7 A;  3HOZ C;  3AD8 C;  1WQG A;  3N0C A;  4C3J K;  3HOV C;  4GTA A;  4A3F C;  4Y7N C;  2ZFZ A;  2PMZ D;  3FOE A;  1DCP A;  1K83 C;  1USM A;  2RGR A;  4A3B C;  4A3K C;  2PMZ L;  2KWA A;  4C3J C;  1R9T A;  5FLM K;  3HKZ D;  3S2H K;  4BLA A;  1F7V A;  2CFA A;  2NVY A;  3HKZ L;  3GTJ K;  1WIH A;  1ZXO A;  4C2M K;  1HQM A;  4PAB A;  5FLM C;  3S2H C;  1O2B A;  3LAP A;  2JA7 A;  3GTJ C;  2V6U A;  1IQ0 A;  4C2M C;  4G7H A;  1O25 A;  4BY7 K;  4OIN A;  3BP8 C;  4Y52 K;  4KMA A;  4G7O A;  1WSV A;  1L0W A;  2GSU A;  3GTK A;  5IYC K;  1XZQ B;  2ZUF A;  3ADA C;  1ZBS A;  4BY7 C;  2WB1 D;  1J6X A;  1WOO A;  3GTQ A;  2PA8 D;  4A3C K;  3T00 A;  4XSZ A;  2O5I A;  2R92 A;  4Y52 C;  2WB1 L;  1I3Q A;  2PA8 L;  3GTP K;  3GEH A;  5IYC C;  4A3M K;  1WSR A;  2A6E A;  3S1N K;  4A3J K;  4OIR A;  4KMH A;  2JA8 K;  5TMF A;  3GSI A;  3QX3 A;  4A3C C;  2E2H K;  3GTM A;  3PO3 K;  4JK1 A;  3GTP C;  1INN A;  3HOX K;  4A3M C;  5M5X K;  3S1N C;  1TWH K;  1TWC K; 
#chains in the Genus database with same CATH homology
 1V5V A;  1WOS A;  3GEE A;  1VRQ C;  3TFJ A;  3GEH A;  1X31 C;  1PJ6 A;  3AD7 C;  3A8K A;  1WSR A;  1WOO A;  3TFH A;  1VLO A;  4P9S A;  1WOR A;  3TFI A;  3A8J A;  1PJ7 A;  3GIR A;  3AD9 C;  3GSI A;  1XZP A;  1YX2 A;  1XZP B;  3AD8 C;  1WSV A;  4PAA A;  1PJ5 A;  2GAH C;  3TTG A;  1WOP A;  1XZQ B;  1XZQ A;  3ADA C;  4PAB A;  3GEI A;  5L46 A;  2GAG C;  3A8I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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