1XZPB

Structure of the gtp-binding protein trme from thermotoga maritima
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
131
structure length
131
Chain Sequence
HWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
total genus 34
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzpB00
1PJ7A 1XZQA 1WOSA 3GEIA 1WSVA 1PJ5A 2GAGC 1VLOA 3AD7C 3GEHA 3TFIA 3ADAC 3GEEA 4PABA 4P9SA 3A8KA 1YX2A 3A8JA 3TFJA 1WORA 1V5VA 3A8IA 3GIRA 3AD9C 1VRQC 3TTGA 4PAAA 3GSIA 5L46A 1WOOA 1XZPB 3AD8C 1XZPA 1X31C 1XZQB 3TFHA 1WSRA 1WOPA 2GAHC 1PJ6A
chains in the Genus database with same CATH superfamily
3FKIA 2GSUA 4BXXK 4G7ZA 2JA7K 1PJ5A 4BY7K 3H0GK 4G7OA 4GTDA 3LPXA 3PO3K 1EI6A 1K83C 1Y1VA 4O2DA 4GTBA 4BBSK 1TWHK 1INNA 1O2FB 4GTAA 1TWFA 3FHZA 4Y52K 2O5IA 5C4JC 1Y1WC 4A3GC 2Y3PA 3GEEA 5FLMC 2GSNA 2YU9A 5FJ8K 4G0VA 3GEHA 2EBBA 3S17K 3H3VL 3T00A 2R7ZK 4A3IC 4ZH4A 2E2IC 5IYDK 3A8KA 1TWGA 4A3LK 5TJ3A 2VUMK 4KB2A 2R93K 1F7UA 3GTQC 3VA7A 3GTJK 4X6AC 3RZOC 1O29A 5M5XK 2A6HA 4ILDA 1Y1VC 1TWCA 4FZBA 1PJ6A 3I4MK 5C3EC 1TWFC 2JA5A 4C3JC 3JSTA 4NOIA 1ZYRA 1VJEA 3HOWK 2B63K 2ZUEA 5IORA 5IYCC 5IP7C 3HKZL 4BY1C 5L46A 1WIHA 3MMLB 2D6FC 2NVXC 1JOEA 3I4NK 1I3QA 3T01A 4KARA 3CQZA 3GTGC 4WILA 3RZDC 1I6HC 3ERED 5M5WK 4Y7NC 2PMZD 4KC6A 3BUEA 1XXCA 3HOXK 1TWAK 2A68A 2JA5C 4OIPA 1V5VA 4LQYA 3GTMA 4KN4A 4BBRC 3AD9C 4P5AA 4M1XA 3T02A 2WB1D 4BLAA 3TTGA 3DXJA 4JK1A 1XZPB 4GTFA 4KAWX 3HOUC 1J6VA 2ZFZA 3TFHA 2RGRA 1WOPA 2JA8K 1I6VA 1J6WA 2Y0SD 3FKIK 4AH6A 1K83A 3S2DK 3S16C 1XXBA 3CQZC 5IYBC 3OEPA 3S1NK 3HOVK 4A3DC 2P8TA 1ZQ1C 1Y1WA 3AH5A 1ZXOA 1R9TK 3K7AC 4QIWD 3AQOA 3LAJA 1BS2A 1I50A 3GTMC 3EQLA 1IL2A 4A3MK 3S2HC 3AQPA 3FOFA 3CAGA 3N0CA 2YU9K 3S14K 2E2IA 5C4XK 4A3FK 4RMFA 3M3YC 1O2BA 3S1RC 3GTQA 1IW7A 3GTPK 2NVTC 1UV7A 4A3EK 4A93K 5IP9C 1TWGK 4A3BK 1YCLA 2WAQD 1SFOA 2PA8D 2CFAA 4A3KK 1WOOA 1HQMA 3AD8C 2R92A 4KN7A 4MEYA 5CJ9A 3S1MK 1TWCK 1AB4A 3BP3A 1ISEA 4C3IK 4Q4ZA 1I50C 4KB4A 4YFNA 1O25A 1B4AA 2JH3A 1IE0A 1WQFA 2NVXA 5EGEA 4LK0A 4A3JK 3HOZK 1BGWA 4KDDA 3S15C 4XSZA 3GTOA 3GTLK 2E2HK 3GTGA 2JA6A 1IQ0A 4XCHA 1EK8A 5M3FK 4GZYA 1I3QK 3PO2K 3S1QK 1SFOC 2GAHC 5CHPA 1PJ7A 3HXAA 1XXAA 3H0GA 1WCMK 1VLOA 2BE5A 2R92C 5TMFA 4C2MC 4C3HK 3Q3QA 3OREA 4G0UA 3M4OC 3BP8C 2NVQC 4FM9A 1WQGA 4BLBA 3GTOC 5IOTA 2E2JC 2JA6C 3HOYK 1HI9A 5JVOA 2R7ZA 4GTEA 1K83K 4BXXC 2JA7C 4BY7C 4A3CK 4P9SA 2VUMA 3H0GC 1YX2A 3GTKK 4KM9A 3GTJA 3GTPC 1USOA 4GFQA 1Y1WK 4WJ3M 3PO3C 5C44K 3S0XA 4BBSC 5FLMK 2NVYK 1TWHC 1EH1A 4LR2A 4Y52C 3WODA 1DD5A 4G0WA 1G51A 4BKWA 2XCQA 2RH6A 4A3IK 1YNNA 3AD7C 1XPPA 5M5YK 1F7VA 5D4DA 4PABA 1GE9A 1IBAA 2PMZL 3A8JA 3GTQK 4YFXA 4GT9A 3SZZA 3RZOK 3S17C 1JVIA 2R7ZC 4AYBD 5IYDC 3HOZC 1Y1VK 4A3LC 4KMDA 2VUMC 4DDQA 5C3EK 2R93C 1TWFK 2WB1L 3GTJC 1J6XA 4KASA 4C3JK 3V4GA 4KMHA 1WSVA 4MQ9A 3I4MC 1USMA 5IOSA 1TWAA 5E68A 5IYCK 4BY1K 2Y0SL 1F93A 4GTCA 2A69A 1F9NA 2ZUFA 3A8IA 3GIRA 2XCOA 1L0WA 2NVXK 3HOWC 2B63C 2V6SA 1ZVUA 4KMAA 3GTGK 5IOQA 1KQ4A 1I6HK 1X31C 2GSOA 4Y7NK 2V6UA 5EGHA 4QIWL 3I4NC 3H3VD 1O28A 3HOYC 2GAGC 3L4JA 2JA5K 4BBRK 2PHCB 3FOEA 1BJTA 4XLPA 1R9TA 4A3CC 3HOXC 1TWAC 3HOUK 3GTKC 4GTLA 3GDZA 4KATA 3G4CA 1XZPA 1VGXA 5C44C 2WAQL 2PA8L 1IS1A 2NVYC 3S16K 3N3YA 2JA7A 1XZQA 1WOSA 3CQZK 2A6EA 5IYBK 3GEIA 1YNJA 4YFKA 2JA8C 4LLGA 3GTPA 4A3DK 3HKZD 3FKIC 4Q5SA 3K7AK 3S2DC 3TFJA 1TWHA 3S1NC 1VRQC 4PAAA 4LK1A 3HOVC 4QJVA 3GTMK 4C45A 1R9TC 3S2HK 1WSRA 2V6TA 3SZYA 1BDFA 1EQRA 2CW0A 4MEXA 3M3YK 3S1RK 1C0AA 2NVTK 4A3MC 2YU9C 4YG2A 3ADAC 5IP9K 3S14C 3GTLA 5C4XC 5M3MK 4A3FC 2E2HA 2R93A 4P5BA 2CFAB 2O5JA 3GSIA 5C4JK 4A3EC 1ZBSA 4OIOA 1J98A 4A93C 1WQHA 4A3GK 1TWGC 4A3BC 2FQOA 4OIRA 5HL8A 4KM8A 4A3KC 1JQWA 1O27A 1WCMA 1I50K 2KWAA 3S1MC 1TWCC 2P5MA 2E2IK 4LJZA 1B4BA 1RU0A 3S15K 2B63A 4C3IC 1VH2A 4J3NA 3LAPA 4X6AK 3L4KA 3OPFA 4A3JC 1SFOK 3QX3A 3GTLC 2E2HC 1XZQB 5TMCA 1DCHA 2XCRB 5JFEA 2R92K 4OIQA 1I3QC 4C2MK 3G4AA 3PO2C 3S1QC 1DCPA 1EFWA 1O26A 2PPBA 4WJ4A 4XLNA 1DCOA 3TFIA 1WCMC 5IP7K 3GTKA 4OINA 1O2AA 2FQTA 1O24A 3M4OK 1WORA 4QJVB 2NVQK 3N0BA 4KMUA 3IPJA 2NVYA 4C3HC 3GTOK 4LOWA 2E2JK 2JA6K 3NUHA 2W7VA 1SMYA 4XSXA 4G7HA 3RZDK 4AYBL
chains in the Genus database with same CATH topology
1PJ7A 1XZQA 1WOSA 3GEIA 1WSVA 1PJ5A 2GAGC 1VLOA 3AD7C 3GEHA 3TFIA 3ADAC 3GEEA 4PABA 4P9SA 3A8KA 1YX2A 3A8JA 3TFJA 1WORA 1V5VA 3A8IA 3GIRA 3AD9C 1VRQC 3TTGA 4PAAA 3GSIA 5L46A 1WOOA 1XZPB 3AD8C 1XZPA 1X31C 1XZQB 3TFHA 1WSRA 1WOPA 2GAHC 1PJ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PJ7 A;  1XZQ A;  1WOS A;  3GEI A;  1WSV A;  1PJ5 A;  2GAG C;  1VLO A;  3AD7 C;  3GEH A;  3TFI A;  3ADA C;  3GEE A;  4PAB A;  4P9S A;  3A8K A;  1YX2 A;  3A8J A;  3TFJ A;  1WOR A;  1V5V A;  3A8I A;  3GIR A;  3AD9 C;  1VRQ C;  3TTG A;  4PAA A;  3GSI A;  5L46 A;  1WOO A;  1XZP B;  3AD8 C;  1XZP A;  1X31 C;  1XZQ B;  3TFH A;  1WSR A;  1WOP A;  2GAH C;  1PJ6 A; 
#chains in the Genus database with same CATH topology
 3FKI A;  2GSU A;  4BXX K;  4G7Z A;  2JA7 K;  1PJ5 A;  4BY7 K;  3H0G K;  4G7O A;  4GTD A;  3LPX A;  3PO3 K;  1EI6 A;  1K83 C;  1Y1V A;  4O2D A;  4GTB A;  4BBS K;  1TWH K;  1INN A;  1O2F B;  4GTA A;  1TWF A;  3FHZ A;  4Y52 K;  2O5I A;  5C4J C;  1Y1W C;  4A3G C;  2Y3P A;  3GEE A;  5FLM C;  2GSN A;  2YU9 A;  5FJ8 K;  4G0V A;  3GEH A;  2EBB A;  3S17 K;  3H3V L;  3T00 A;  2R7Z K;  4A3I C;  4ZH4 A;  2E2I C;  5IYD K;  3A8K A;  1TWG A;  4A3L K;  5TJ3 A;  2VUM K;  4KB2 A;  2R93 K;  1F7U A;  3GTQ C;  3VA7 A;  3GTJ K;  4X6A C;  3RZO C;  1O29 A;  5M5X K;  2A6H A;  4ILD A;  1Y1V C;  1TWC A;  4FZB A;  1PJ6 A;  3I4M K;  5C3E C;  1TWF C;  2JA5 A;  4C3J C;  3JST A;  4NOI A;  1ZYR A;  1VJE A;  3HOW K;  2B63 K;  2ZUE A;  5IOR A;  5IYC C;  5IP7 C;  3HKZ L;  4BY1 C;  5L46 A;  1WIH A;  3MML B;  2D6F C;  2NVX C;  1JOE A;  3I4N K;  1I3Q A;  3T01 A;  4KAR A;  3CQZ A;  3GTG C;  4WIL A;  3RZD C;  1I6H C;  3ERE D;  5M5W K;  4Y7N C;  2PMZ D;  4KC6 A;  3BUE A;  1XXC A;  3HOX K;  1TWA K;  2A68 A;  2JA5 C;  4OIP A;  1V5V A;  4LQY A;  3GTM A;  4KN4 A;  4BBR C;  3AD9 C;  4P5A A;  4M1X A;  3T02 A;  2WB1 D;  4BLA A;  3TTG A;  3DXJ A;  4JK1 A;  1XZP B;  4GTF A;  4KAW X;  3HOU C;  1J6V A;  2ZFZ A;  3TFH A;  2RGR A;  1WOP A;  2JA8 K;  1I6V A;  1J6W A;  2Y0S D;  3FKI K;  4AH6 A;  1K83 A;  3S2D K;  3S16 C;  1XXB A;  3CQZ C;  5IYB C;  3OEP A;  3S1N K;  3HOV K;  4A3D C;  2P8T A;  1ZQ1 C;  1Y1W A;  3AH5 A;  1ZXO A;  1R9T K;  3K7A C;  4QIW D;  3AQO A;  3LAJ A;  1BS2 A;  1I50 A;  3GTM C;  3EQL A;  1IL2 A;  4A3M K;  3S2H C;  3AQP A;  3FOF A;  3CAG A;  3N0C A;  2YU9 K;  3S14 K;  2E2I A;  5C4X K;  4A3F K;  4RMF A;  3M3Y C;  1O2B A;  3S1R C;  3GTQ A;  1IW7 A;  3GTP K;  2NVT C;  1UV7 A;  4A3E K;  4A93 K;  5IP9 C;  1TWG K;  4A3B K;  1YCL A;  2WAQ D;  1SFO A;  2PA8 D;  2CFA A;  4A3K K;  1WOO A;  1HQM A;  3AD8 C;  2R92 A;  4KN7 A;  4MEY A;  5CJ9 A;  3S1M K;  1TWC K;  1AB4 A;  3BP3 A;  1ISE A;  4C3I K;  4Q4Z A;  1I50 C;  4KB4 A;  4YFN A;  1O25 A;  1B4A A;  2JH3 A;  1IE0 A;  1WQF A;  2NVX A;  5EGE A;  4LK0 A;  4A3J K;  3HOZ K;  1BGW A;  4KDD A;  3S15 C;  4XSZ A;  3GTO A;  3GTL K;  2E2H K;  3GTG A;  2JA6 A;  1IQ0 A;  4XCH A;  1EK8 A;  5M3F K;  4GZY A;  1I3Q K;  3PO2 K;  3S1Q K;  1SFO C;  2GAH C;  5CHP A;  1PJ7 A;  3HXA A;  1XXA A;  3H0G A;  1WCM K;  1VLO A;  2BE5 A;  2R92 C;  5TMF A;  4C2M C;  4C3H K;  3Q3Q A;  3ORE A;  4G0U A;  3M4O C;  3BP8 C;  2NVQ C;  4FM9 A;  1WQG A;  4BLB A;  3GTO C;  5IOT A;  2E2J C;  2JA6 C;  3HOY K;  1HI9 A;  5JVO A;  2R7Z A;  4GTE A;  1K83 K;  4BXX C;  2JA7 C;  4BY7 C;  4A3C K;  4P9S A;  2VUM A;  3H0G C;  1YX2 A;  3GTK K;  4KM9 A;  3GTJ A;  3GTP C;  1USO A;  4GFQ A;  1Y1W K;  4WJ3 M;  3PO3 C;  5C44 K;  3S0X A;  4BBS C;  5FLM K;  2NVY K;  1TWH C;  1EH1 A;  4LR2 A;  4Y52 C;  3WOD A;  1DD5 A;  4G0W A;  1G51 A;  4BKW A;  2XCQ A;  2RH6 A;  4A3I K;  1YNN A;  3AD7 C;  1XPP A;  5M5Y K;  1F7V A;  5D4D A;  4PAB A;  1GE9 A;  1IBA A;  2PMZ L;  3A8J A;  3GTQ K;  4YFX A;  4GT9 A;  3SZZ A;  3RZO K;  3S17 C;  1JVI A;  2R7Z C;  4AYB D;  5IYD C;  3HOZ C;  1Y1V K;  4A3L C;  4KMD A;  2VUM C;  4DDQ A;  5C3E K;  2R93 C;  1TWF K;  2WB1 L;  3GTJ C;  1J6X A;  4KAS A;  4C3J K;  3V4G A;  4KMH A;  1WSV A;  4MQ9 A;  3I4M C;  1USM A;  5IOS A;  1TWA A;  5E68 A;  5IYC K;  4BY1 K;  2Y0S L;  1F93 A;  4GTC A;  2A69 A;  1F9N A;  2ZUF A;  3A8I A;  3GIR A;  2XCO A;  1L0W A;  2NVX K;  3HOW C;  2B63 C;  2V6S A;  1ZVU A;  4KMA A;  3GTG K;  5IOQ A;  1KQ4 A;  1I6H K;  1X31 C;  2GSO A;  4Y7N K;  2V6U A;  5EGH A;  4QIW L;  3I4N C;  3H3V D;  1O28 A;  3HOY C;  2GAG C;  3L4J A;  2JA5 K;  4BBR K;  2PHC B;  3FOE A;  1BJT A;  4XLP A;  1R9T A;  4A3C C;  3HOX C;  1TWA C;  3HOU K;  3GTK C;  4GTL A;  3GDZ A;  4KAT A;  3G4C A;  1XZP A;  1VGX A;  5C44 C;  2WAQ L;  2PA8 L;  1IS1 A;  2NVY C;  3S16 K;  3N3Y A;  2JA7 A;  1XZQ A;  1WOS A;  3CQZ K;  2A6E A;  5IYB K;  3GEI A;  1YNJ A;  4YFK A;  2JA8 C;  4LLG A;  3GTP A;  4A3D K;  3HKZ D;  3FKI C;  4Q5S A;  3K7A K;  3S2D C;  3TFJ A;  1TWH A;  3S1N C;  1VRQ C;  4PAA A;  4LK1 A;  3HOV C;  4QJV A;  3GTM K;  4C45 A;  1R9T C;  3S2H K;  1WSR A;  2V6T A;  3SZY A;  1BDF A;  1EQR A;  2CW0 A;  4MEX A;  3M3Y K;  3S1R K;  1C0A A;  2NVT K;  4A3M C;  2YU9 C;  4YG2 A;  3ADA C;  5IP9 K;  3S14 C;  3GTL A;  5C4X C;  5M3M K;  4A3F C;  2E2H A;  2R93 A;  4P5B A;  2CFA B;  2O5J A;  3GSI A;  5C4J K;  4A3E C;  1ZBS A;  4OIO A;  1J98 A;  4A93 C;  1WQH A;  4A3G K;  1TWG C;  4A3B C;  2FQO A;  4OIR A;  5HL8 A;  4KM8 A;  4A3K C;  1JQW A;  1O27 A;  1WCM A;  1I50 K;  2KWA A;  3S1M C;  1TWC C;  2P5M A;  2E2I K;  4LJZ A;  1B4B A;  1RU0 A;  3S15 K;  2B63 A;  4C3I C;  1VH2 A;  4J3N A;  3LAP A;  4X6A K;  3L4K A;  3OPF A;  4A3J C;  1SFO K;  3QX3 A;  3GTL C;  2E2H C;  1XZQ B;  5TMC A;  1DCH A;  2XCR B;  5JFE A;  2R92 K;  4OIQ A;  1I3Q C;  4C2M K;  3G4A A;  3PO2 C;  3S1Q C;  1DCP A;  1EFW A;  1O26 A;  2PPB A;  4WJ4 A;  4XLN A;  1DCO A;  3TFI A;  1WCM C;  5IP7 K;  3GTK A;  4OIN A;  1O2A A;  2FQT A;  1O24 A;  3M4O K;  1WOR A;  4QJV B;  2NVQ K;  3N0B A;  4KMU A;  3IPJ A;  2NVY A;  4C3H C;  3GTO K;  4LOW A;  2E2J K;  2JA6 K;  3NUH A;  2W7V A;  1SMY A;  4XSX A;  4G7H A;  3RZD K;  4AYB L; 
#chains in the Genus database with same CATH homology
 1PJ7 A;  1XZQ A;  1WOS A;  3GEI A;  1WSV A;  1PJ5 A;  2GAG C;  1VLO A;  3AD7 C;  3GEH A;  3TFI A;  3ADA C;  3GEE A;  4PAB A;  4P9S A;  3A8K A;  1YX2 A;  3A8J A;  3TFJ A;  1WOR A;  1V5V A;  3A8I A;  3GIR A;  3AD9 C;  1VRQ C;  3TTG A;  4PAA A;  3GSI A;  5L46 A;  1WOO A;  1XZP B;  3AD8 C;  1XZP A;  1X31 C;  1XZQ B;  3TFH A;  1WSR A;  1WOP A;  2GAH C;  1PJ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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