1XZPB

Structure of the gtp-binding protein trme from thermotoga maritima
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
131
structure length
131
Chain Sequence
b'HWGSPNSSSVDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable tRNA modification GTPase trmE
publication title The structure of the TrmE GTP-binding protein and its implications for tRNA modification
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Hydrolase
total genus 34
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2004-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10396 TrmE_N GTP-binding protein TrmE N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.120 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Probable tRNA modification gtpase trme; domain 1 1xzpB00
1XZQB 3GEEA 2GAGC 1PJ6A 3A8IA 1WSRA 1VRQC 3AD9C 3GEIA 3AD7C 3GIRA 1WOOA 1VLOA 3TFIA 3TTGA 3TFJA 1XZPA 3A8JA 3AD8C 3GEHA 1PJ7A 3ADAC 1XZQA 1YX2A 3GSIA 5L46A 4P9SA 4PABA 1X31C 1WOPA 1WSVA 1WOSA 3TFHA 1XZPB 1WORA 1PJ5A 1V5VA 4PAAA 2GAHC 3A8KA
chains in the Genus database with same CATH superfamily
2XCRB 3I4MC 2BE5A 2RH6A 5IP7C 3I4MK 1WSRA 3GTLK 2JA6A 4GTBA 5IP7K 4A3BC 4A3BK 4KMDA 1ISEA 3L4KA 2XCQA 4OINA 2JA7C 4KARA 3GTJC 2JA5C 2JA7K 1VGXA 1YX2A 3GTJK 2JA5K 5M3MK 3GTGC 1YNJA 3GTGK 1EFWA 1WOPA 3CAGA 3PO2C 1EI6A 3S17C 3PO2K 3S17K 4WJ3M 4J3NA 1O26A 4OIQA 3BP8C 5C4XC 3GTMA 5D4DA 4BY1C 5C4XK 3AD8C 4LK1A 4BY1K 2O5IA 2WAQL 3V4GA 2WAQD 3GDZA 4PABA 1X31C 4G7OA 1WOSA 1TWHC 3GTQA 1IE0A 1DCPA 3G4AA 1TWHK 3S15C 3S15K 4XCHA 3QX3A 4C3HC 5C4JC 4A93C 1GE9A 4C3HK 1PJ6A 4DDQA 5C4JK 4A93K 3SZYA 3M4OC 3H0GA 2GSNA 3T02A 1I3QA 4BBRC 3M4OK 1ZYRA 4BBRK 1BS2A 3FKIC 1TWGC 3T00A 4BKWA 3FKIK 1TWGK 4P5BA 4KASA 4A3CC 3HOYC 4ZH4A 5JVOA 4A3CK 1WCMA 3HOYK 1V5VA 5C44C 2FQTA 1WQFA 2R92A 5C44K 1VH2A 3HOZC 3HOZK 1IL2A 4A3MC 5IOSA 3S1NC 4A3MK 2VUMC 4G7HA 1IQ0A 3S1NK 3N3YA 3AQPA 1C0AA 4C3IK 4LQYA 2JA8C 2E2IC 4GTFA 3HOWC 2JA8K 4OIRA 2E2IK 3HOWK 5TMFA 5FJ8K 2E2HA 3WODA 2A6HA 4G0UA 1DCOA 4C3JC 1F7UA 4FM9A 4KMHA 4C3JK 2RGRA 3S1QC 2PMZD 3GEIA 3S1QK 2FQOA 1WQGA 5IYDK 4YG2A 1INNA 4BXXC 2R7ZA 4G7ZA 4BXXK 3AQOA 1DCHA 2A69A 1O29A 4KATA 1TWCC 1TWCK 4G0VA 2NVYC 4A3FC 2NVYK 4A3FK 5M5XK 2YU9A 3N0CA 1TWAA 1R9TC 2NVXC 1R9TK 2NVXK 4A3KC 3GTLC 4KN7A 1VRQC 4A3KK 1VJEA 2ZUEA 1WOOA 1SMYA 1K83A 2CFAA 2B63A 2GSOA 2YU9C 2R93C 2YU9K 1AB4A 4MEXA 4A3JC 2R93K 4A3JK 3H3VD 2JA6C 1O2BA 2JA6K 3IPJA 1YNNA 2CFAB 5FLMC 1WORA 2O5JA 5FLMK 3SZZA 4GTLA 4GZYA 4WJ4A 3FHZA 4A3GC 1DD5A 4A3GK 3AD7C 4BLAA 3FOEA 5IP9C 2ZUFA 3S2DC 5IP9K 3S2DK 4GTAA 3GTOA 3GEHA 4BBSC 4XLNA 1IS1A 4BBSK 1O2AA 4BLBA 1HQMA 3L4JA 1EK8A 3GTMC 5M5YK 1O27A 3GTMK 1USOA 4A3LK 4QJVA 2NVQC 1JOEA 4Y7NC 2NVQK 3GTQC 4Y7NK 4XSXA 3GTQK 1YCLA 3HKZD 4QJVB 3S2HC 1Y1VA 3BP3A 5TMCA 5IOQA 3FOFA 3S2HK 4GT9A 3H0GC 1I3QC 1TWFA 3H0GK 1I3QK 3T01A 1XXBA 1JVIA 1I6VA 4M1XA 5CJ9A 4ILDA 2CW0A 5TJ3A 4GTDA 1USMA 1WCMC 3HOUC 4MEYA 3A8JA 1WCMK 3HOUK 4LR2A 2R92C 4C45A 4C3IC 1Y1WA 2R92K 2JH3A 3N0BA 2WB1D 4KN4A 3BUEA 1O2FB 1RU0A 1PJ5A 4LJZA 4PAAA 3HOVC 3I4NC 2GAHC 3OREA 1F7VA 3HOVK 3I4NK 2E2JC 1WQHA 2PMZL 4KB2A 2E2JK 2GSUA 3TFIA 3GTKA 5IYDC 4GFQA 4AYBL 2E2HC 4KDDA 2P5MA 4Q4ZA 2E2HK 1O25A 4AYBD 2PHCB 4G0WA 3G4CA 1ZVUA 5M3FK 1I50A 1BGWA 1WSVA 2ZFZA 1XXAA 1SFOA 4KM8A 2R7ZC 3A8KA 2R7ZK 3ERED 3LAPA 1IW7A 4KAWX 4O2DA 4AH6A 3GTPA 4Q5SA 3CQZA 5IYBC 5IOTA 3ADAC 5IYBK 1HI9A 1TWAC 3H3VL 3S14C 1XZQA 1TWAK 4OIPA 3S14K 1K83C 2B63C 1K83K 2B63K 5JFEA 3HXAA 3M3YC 4KMAA 2V6UA 3M3YK 2JA7A 1XZQB 3JSTA 3GEEA 1L0WA 3GTJA 2JA5A 1IBAA 3GTGA 4Y52C 3TTGA 1VLOA 4Y52K 1WIHA 5E68A 4YFXA 2KWAA 1ZQ1C 4NOIA 4LK0A 2Y0SL 3VA7A 3LAJA 2Y0SD 4YFKA 3S1RC 2PPBA 3GTOC 3EQLA 3S1RK 3GTOK 1XXCA 5IYCC 4A3LC 5IYCK 3DXJA 5HL8A 3A8IA 3NUHA 1KQ4A 4C2MC 1TWHA 1XZPA 1EQRA 4GTEA 4C2MK 3PO3C 4KMUA 1BDFA 2V6SA 3PO3K 3HKZL 4LLGA 3OEPA 3GSIA 4QIWL 4QIWD 4KM9A 1XZPB 4FZBA 2A68A 2P8TA 3RZDC 3FKIA 1Y1VC 3RZDK 1TWGA 2GAGC 1F9NA 1Y1VK 3AD9C 4JK1A 1TWFC 3RZOC 2EBBA 3S16C 1TWFK 3RZOK 1B4AA 3S16K 1PJ7A 3OPFA 3Q3QA 3K7AC 3MMLB 2WB1L 3K7AK 1J6VA 2PA8L 4A3DC 1BJTA 4P9SA 5EGEA 1XPPA 1J6WA 4A3DK 2PA8D 1G51A 3LPXA 2Y3PA 5EGHA 2VUMA 3HOXC 2A6EA 3HOXK 1Y1WC 1J6XA 1Y1WK 2D6FC 2E2IA 1B4BA 3GIRA 3TFJA 4KC6A 2VUMK 1I6HC 1JQWA 4GTCA 4A3EC 1I6HK 4A3EK 1J98A 1O24A 4LOWA 4BY7C 3GTKC 4BY7K 5C3EC 3GTKK 5M5WK 4XSZA 5C3EK 4YFNA 4XLPA 3AH5A 4RMFA 5CHPA 1F93A 2XCOA 1I50C 2NVTC 1TWCA 1EH1A 1I50K 2NVTK 4A3IC 2NVYA 1SFOC 4A3IK 1SFOK 5IORA 1ZBSA 4X6AC 1UV7A 3S0XA 1R9TA 2NVXA 4X6AK 4MQ9A 5L46A 1O28A 3GTLA 2V6TA 4P5AA 4OIOA 4WILA 3GTPC 3CQZC 1ZXOA 3TFHA 3GTPK 3CQZK 3S1MC 2W7VA 2R93A 3S1MK 4KB4A
chains in the Genus database with same CATH topology
1XZQB 3GEEA 2GAGC 1PJ6A 3A8IA 1WSRA 1VRQC 3AD9C 3GEIA 3AD7C 3GIRA 1WOOA 1VLOA 3TFIA 3TTGA 3TFJA 1XZPA 3A8JA 3AD8C 3GEHA 1PJ7A 3ADAC 1XZQA 1YX2A 3GSIA 5L46A 4P9SA 4PABA 1X31C 1WOPA 1WSVA 1WOSA 3TFHA 1XZPB 1WORA 1PJ5A 1V5VA 4PAAA 2GAHC 3A8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XZQ B;  3GEE A;  2GAG C;  1PJ6 A;  3A8I A;  1WSR A;  1VRQ C;  3AD9 C;  3GEI A;  3AD7 C;  3GIR A;  1WOO A;  1VLO A;  3TFI A;  3TTG A;  3TFJ A;  1XZP A;  3A8J A;  3AD8 C;  3GEH A;  1PJ7 A;  3ADA C;  1XZQ A;  1YX2 A;  3GSI A;  5L46 A;  4P9S A;  4PAB A;  1X31 C;  1WOP A;  1WSV A;  1WOS A;  3TFH A;  1XZP B;  1WOR A;  1PJ5 A;  1V5V A;  4PAA A;  2GAH C;  3A8K A; 
#chains in the Genus database with same CATH topology
 2XCR B;  3I4M C;  2BE5 A;  2RH6 A;  5IP7 C;  3I4M K;  1WSR A;  3GTL K;  2JA6 A;  4GTB A;  5IP7 K;  4A3B C;  4A3B K;  4KMD A;  1ISE A;  3L4K A;  2XCQ A;  4OIN A;  2JA7 C;  4KAR A;  3GTJ C;  2JA5 C;  2JA7 K;  1VGX A;  1YX2 A;  3GTJ K;  2JA5 K;  5M3M K;  3GTG C;  1YNJ A;  3GTG K;  1EFW A;  1WOP A;  3CAG A;  3PO2 C;  1EI6 A;  3S17 C;  3PO2 K;  3S17 K;  4WJ3 M;  4J3N A;  1O26 A;  4OIQ A;  3BP8 C;  5C4X C;  3GTM A;  5D4D A;  4BY1 C;  5C4X K;  3AD8 C;  4LK1 A;  4BY1 K;  2O5I A;  2WAQ L;  3V4G A;  2WAQ D;  3GDZ A;  4PAB A;  1X31 C;  4G7O A;  1WOS A;  1TWH C;  3GTQ A;  1IE0 A;  1DCP A;  3G4A A;  1TWH K;  3S15 C;  3S15 K;  4XCH A;  3QX3 A;  4C3H C;  5C4J C;  4A93 C;  1GE9 A;  4C3H K;  1PJ6 A;  4DDQ A;  5C4J K;  4A93 K;  3SZY A;  3M4O C;  3H0G A;  2GSN A;  3T02 A;  1I3Q A;  4BBR C;  3M4O K;  1ZYR A;  4BBR K;  1BS2 A;  3FKI C;  1TWG C;  3T00 A;  4BKW A;  3FKI K;  1TWG K;  4P5B A;  4KAS A;  4A3C C;  3HOY C;  4ZH4 A;  5JVO A;  4A3C K;  1WCM A;  3HOY K;  1V5V A;  5C44 C;  2FQT A;  1WQF A;  2R92 A;  5C44 K;  1VH2 A;  3HOZ C;  3HOZ K;  1IL2 A;  4A3M C;  5IOS A;  3S1N C;  4A3M K;  2VUM C;  4G7H A;  1IQ0 A;  3S1N K;  3N3Y A;  3AQP A;  1C0A A;  4C3I K;  4LQY A;  2JA8 C;  2E2I C;  4GTF A;  3HOW C;  2JA8 K;  4OIR A;  2E2I K;  3HOW K;  5TMF A;  5FJ8 K;  2E2H A;  3WOD A;  2A6H A;  4G0U A;  1DCO A;  4C3J C;  1F7U A;  4FM9 A;  4KMH A;  4C3J K;  2RGR A;  3S1Q C;  2PMZ D;  3GEI A;  3S1Q K;  2FQO A;  1WQG A;  5IYD K;  4YG2 A;  1INN A;  4BXX C;  2R7Z A;  4G7Z A;  4BXX K;  3AQO A;  1DCH A;  2A69 A;  1O29 A;  4KAT A;  1TWC C;  1TWC K;  4G0V A;  2NVY C;  4A3F C;  2NVY K;  4A3F K;  5M5X K;  2YU9 A;  3N0C A;  1TWA A;  1R9T C;  2NVX C;  1R9T K;  2NVX K;  4A3K C;  3GTL C;  4KN7 A;  1VRQ C;  4A3K K;  1VJE A;  2ZUE A;  1WOO A;  1SMY A;  1K83 A;  2CFA A;  2B63 A;  2GSO A;  2YU9 C;  2R93 C;  2YU9 K;  1AB4 A;  4MEX A;  4A3J C;  2R93 K;  4A3J K;  3H3V D;  2JA6 C;  1O2B A;  2JA6 K;  3IPJ A;  1YNN A;  2CFA B;  5FLM C;  1WOR A;  2O5J A;  5FLM K;  3SZZ A;  4GTL A;  4GZY A;  4WJ4 A;  3FHZ A;  4A3G C;  1DD5 A;  4A3G K;  3AD7 C;  4BLA A;  3FOE A;  5IP9 C;  2ZUF A;  3S2D C;  5IP9 K;  3S2D K;  4GTA A;  3GTO A;  3GEH A;  4BBS C;  4XLN A;  1IS1 A;  4BBS K;  1O2A A;  4BLB A;  1HQM A;  3L4J A;  1EK8 A;  3GTM C;  5M5Y K;  1O27 A;  3GTM K;  1USO A;  4A3L K;  4QJV A;  2NVQ C;  1JOE A;  4Y7N C;  2NVQ K;  3GTQ C;  4Y7N K;  4XSX A;  3GTQ K;  1YCL A;  3HKZ D;  4QJV B;  3S2H C;  1Y1V A;  3BP3 A;  5TMC A;  5IOQ A;  3FOF A;  3S2H K;  4GT9 A;  3H0G C;  1I3Q C;  1TWF A;  3H0G K;  1I3Q K;  3T01 A;  1XXB A;  1JVI A;  1I6V A;  4M1X A;  5CJ9 A;  4ILD A;  2CW0 A;  5TJ3 A;  4GTD A;  1USM A;  1WCM C;  3HOU C;  4MEY A;  3A8J A;  1WCM K;  3HOU K;  4LR2 A;  2R92 C;  4C45 A;  4C3I C;  1Y1W A;  2R92 K;  2JH3 A;  3N0B A;  2WB1 D;  4KN4 A;  3BUE A;  1O2F B;  1RU0 A;  1PJ5 A;  4LJZ A;  4PAA A;  3HOV C;  3I4N C;  2GAH C;  3ORE A;  1F7V A;  3HOV K;  3I4N K;  2E2J C;  1WQH A;  2PMZ L;  4KB2 A;  2E2J K;  2GSU A;  3TFI A;  3GTK A;  5IYD C;  4GFQ A;  4AYB L;  2E2H C;  4KDD A;  2P5M A;  4Q4Z A;  2E2H K;  1O25 A;  4AYB D;  2PHC B;  4G0W A;  3G4C A;  1ZVU A;  5M3F K;  1I50 A;  1BGW A;  1WSV A;  2ZFZ A;  1XXA A;  1SFO A;  4KM8 A;  2R7Z C;  3A8K A;  2R7Z K;  3ERE D;  3LAP A;  1IW7 A;  4KAW X;  4O2D A;  4AH6 A;  3GTP A;  4Q5S A;  3CQZ A;  5IYB C;  5IOT A;  3ADA C;  5IYB K;  1HI9 A;  1TWA C;  3H3V L;  3S14 C;  1XZQ A;  1TWA K;  4OIP A;  3S14 K;  1K83 C;  2B63 C;  1K83 K;  2B63 K;  5JFE A;  3HXA A;  3M3Y C;  4KMA A;  2V6U A;  3M3Y K;  2JA7 A;  1XZQ B;  3JST A;  3GEE A;  1L0W A;  3GTJ A;  2JA5 A;  1IBA A;  3GTG A;  4Y52 C;  3TTG A;  1VLO A;  4Y52 K;  1WIH A;  5E68 A;  4YFX A;  2KWA A;  1ZQ1 C;  4NOI A;  4LK0 A;  2Y0S L;  3VA7 A;  3LAJ A;  2Y0S D;  4YFK A;  3S1R C;  2PPB A;  3GTO C;  3EQL A;  3S1R K;  3GTO K;  1XXC A;  5IYC C;  4A3L C;  5IYC K;  3DXJ A;  5HL8 A;  3A8I A;  3NUH A;  1KQ4 A;  4C2M C;  1TWH A;  1XZP A;  1EQR A;  4GTE A;  4C2M K;  3PO3 C;  4KMU A;  1BDF A;  2V6S A;  3PO3 K;  3HKZ L;  4LLG A;  3OEP A;  3GSI A;  4QIW L;  4QIW D;  4KM9 A;  1XZP B;  4FZB A;  2A68 A;  2P8T A;  3RZD C;  3FKI A;  1Y1V C;  3RZD K;  1TWG A;  2GAG C;  1F9N A;  1Y1V K;  3AD9 C;  4JK1 A;  1TWF C;  3RZO C;  2EBB A;  3S16 C;  1TWF K;  3RZO K;  1B4A A;  3S16 K;  1PJ7 A;  3OPF A;  3Q3Q A;  3K7A C;  3MML B;  2WB1 L;  3K7A K;  1J6V A;  2PA8 L;  4A3D C;  1BJT A;  4P9S A;  5EGE A;  1XPP A;  1J6W A;  4A3D K;  2PA8 D;  1G51 A;  3LPX A;  2Y3P A;  5EGH A;  2VUM A;  3HOX C;  2A6E A;  3HOX K;  1Y1W C;  1J6X A;  1Y1W K;  2D6F C;  2E2I A;  1B4B A;  3GIR A;  3TFJ A;  4KC6 A;  2VUM K;  1I6H C;  1JQW A;  4GTC A;  4A3E C;  1I6H K;  4A3E K;  1J98 A;  1O24 A;  4LOW A;  4BY7 C;  3GTK C;  4BY7 K;  5C3E C;  3GTK K;  5M5W K;  4XSZ A;  5C3E K;  4YFN A;  4XLP A;  3AH5 A;  4RMF A;  5CHP A;  1F93 A;  2XCO A;  1I50 C;  2NVT C;  1TWC A;  1EH1 A;  1I50 K;  2NVT K;  4A3I C;  2NVY A;  1SFO C;  4A3I K;  1SFO K;  5IOR A;  1ZBS A;  4X6A C;  1UV7 A;  3S0X A;  1R9T A;  2NVX A;  4X6A K;  4MQ9 A;  5L46 A;  1O28 A;  3GTL A;  2V6T A;  4P5A A;  4OIO A;  4WIL A;  3GTP C;  3CQZ C;  1ZXO A;  3TFH A;  3GTP K;  3CQZ K;  3S1M C;  2W7V A;  2R93 A;  3S1M K;  4KB4 A; 
#chains in the Genus database with same CATH homology
 1XZQ B;  3GEE A;  2GAG C;  1PJ6 A;  3A8I A;  1WSR A;  1VRQ C;  3AD9 C;  3GEI A;  3AD7 C;  3GIR A;  1WOO A;  1VLO A;  3TFI A;  3TTG A;  3TFJ A;  1XZP A;  3A8J A;  3AD8 C;  3GEH A;  1PJ7 A;  3ADA C;  1XZQ A;  1YX2 A;  3GSI A;  5L46 A;  4P9S A;  4PAB A;  1X31 C;  1WOP A;  1WSV A;  1WOS A;  3TFH A;  1XZP B;  1WOR A;  1PJ5 A;  1V5V A;  4PAA A;  2GAH C;  3A8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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