1USOA

Dcoh, a bifunctional protein-binding transcriptional coactivator, pro9leu mutant
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
77
structure length
77
Chain Sequence
DWEERENPKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Transcriptional Coactivator DCoH from Thermus Thermophilus
rcsb
source organism Thermus thermophilus
molecule tags Transcriptional stimulator
molecule keywords HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
total genus 20
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1usoA00
1USMA 1DCPA 2V6UA 3JSTA 4C45A 1F93A 4WILA 2V6TA 3HXAA 1USOA 1DCOA 2EBBA 1DCHA 4LOWA 2V6SA 1RU0A
chains in the Genus database with same CATH superfamily
4A3LC 4A3CK 2VUMK 4OIOA 3HOWK 1SMYA 2NVQC 1AB4A 3M4OC 3S1QK 4P5BA 3M3YC 3GTOC 4A3KC 3K7AK 4GTLA 2RH6A 2E2HC 1TWAC 1WOSA 1WOOA 3H0GK 4G7HA 3GTPA 1WQHA 3AQOA 3L4JA 1J6XA 4C3HC 2JA7A 4QIWD 4BXXC 1I6VA 1PJ7A 4LQYA 1R9TA 4GTFA 4QJVA 3I4NK 4O2DA 4KMDA 1TWCK 2E2JK 1XXBA 4KATA 4BY7K 1YX2A 3S2DK 1XZPB 1I6HC 1ISEA 1I50C 1WCMC 1HQMA 2JA7K 3AQPA 2KWAA 2BE5A 2XCRB 1J6WA 2JA7C 2A68A 1BDFA 2CFAA 1TWCA 5IOQA 5CHPA 2CFAB 1ZBSA 1F7UA 4ILDA 4KN4A 2FQTA 2A6EA 2GSOA 5IP9K 5IYBK 1O24A 4BY1K 2VUMC 4WILA 3DXJA 2Y3PA 4A3BC 5IYDK 3S0XA 1XZPA 1EI6A 4PABA 3GTMA 3N3YA 4G0UA 4C3IC 2NVTK 4JK1A 2ZUEA 1KQ4A 3GTKC 1F9NA 4GFQA 4LK1A 4PAAA 2CW0A 3GTLK 4YFXA 4BBSC 2ZUFA 3GEEA 4A3DC 3HKZL 5C44C 1TWFK 4J3NA 1TWGA 5IP7C 5D4DA 4A3FK 3CQZA 3K7AC 4KASA 1Y1WK 2VUMA 3GTMK 1EK8A 5HL8A 3GSIA 3GTMC 5EGEA 1SFOK 2YU9K 2JA5A 4BLAA 2PA8D 1VGXA 4A3MK 1TWFA 3GTJK 1DCHA 2JA6K 2R93C 4A3IK 1IS1A 1TWHC 1I3QK 1TWGC 4MEXA 4A3IC 4C2MK 2E2JC 1XXCA 4P9SA 4A3JK 1SFOA 3FKIC 1IQ0A 2YU9A 1USMA 2WB1D 1K83K 2JA5C 3A8KA 3A8IA 3IPJA 3GIRA 5IYBC 1IL2A 4G7OA 4G0WA 5L46A 2FQOA 4WJ4A 3GDZA 3GTKA 4XLPA 2NVXC 2A6HA 1YCLA 3AD8C 2GAHC 3H3VL 3AH5A 1YNNA 3SZZA 3S14K 5JVOA 1F7VA 1XZQA 3QX3A 3M4OK 4A3GK 3HOVC 1XXAA 4LK0A 2WAQL 3GTGC 1DCOA 3S17K 1VJEA 4QIWL 1O26A 1TWHA 1RU0A 3AD9C 3GTLA 3M3YK 3HOZK 2JA8K 1ZYRA 3BP8C 2PMZD 4Y52C 1G51A 3HOXC 1TWAK 2V6UA 4XSZA 2O5JA 1WCMA 2PPBA 4AYBD 3N0BA 1K83C 2JA5K 3I4NC 3GTJA 1ZVUA 4OIPA 1TWCC 1EFWA 3PO2C 1O28A 4YFNA 3NUHA 1Y1VC 3FOEA 1XZQB 1HI9A 2B63A 2XCQA 3HOUK 1WORA 4A93K 4G0VA 2R92C 4KMUA 3HOYC 1IE0A 4MQ9A 5EGHA 3S15K 3S14C 4DDQA 4KMHA 4BBRC 5FLMC 3SZYA 3HOVK 3N0CA 4QJVB 3GTGA 4C45A 4Y7NK 1GE9A 4KARA 3S1QC 2R7ZA 1JQWA 1IBAA 4LJZA 4BY1C 5IOSA 2XCOA 2B63C 4Q5SA 1O27A 3GEHA 4GZYA 1JOEA 1WSRA 4C3JK 4OIRA 3V4GA 2NVYA 5TMCA 4LR2A 4A3FC 5TMFA 2P5MA 4FZBA 3HOXK 4LOWA 3GTPK 3TTGA 1I50K 1EH1A 1ZQ1C 1TWGK 1EQRA 4LLGA 3S1RK 1V5VA 4GTEA 1B4AA 1TWFC 4A3CC 2W7VA 3HOWC 1R9TK 4G7ZA 2RGRA 5M5YK 3GEIA 3JSTA 2R93K 1R9TC 3VA7A 2NVYC 3ERED 5C3EC 3LAJA 1I50A 2YU9C 5C4JC 3BP3A 5C3EK 5CJ9A 5TJ3A 4KM9A 3RZOC 1L0WA 4GT9A 1I6HK 3I4MK 1WCMK 5IORA 1I3QC 3GTQK 3PO2K 4C3IK 3T00A 2NVTC 4WJ3M 2NVXA 3S1NK 4GTAA 2R7ZC 3PO3K 4BY7C 4AH6A 4GTDA 2A69A 1O2FB 3L4KA 2NVQK 1J98A 1C0AA 3GTOK 3S17C 3GTKK 4KAWX 5FLMK 3H0GC 4A3DK 5C4XC 2V6TA 2WAQD 4KM8A 4A3LK 2JH3A 3HOZC 3FOFA 3S2HC 2O5IA 1WIHA 3OREA 4X6AC 4OIQA 3CQZK 3GTOA 3GTLC 3H3VD 3LPXA 3CQZC 1BS2A 3S16C 3T02A 5IP7K 4MEYA 4A3MC 3S16K 1IW7A 4NOIA 4A3KK 3S2DC 1VH2A 1TWHK 2PA8L 4FM9A 4GTCA 2Y0SD 1I3QA 2Y0SL 3I4MC 4A3EC 1ZXOA 4BXXK 4A3EK 3BUEA 1X31C 2PMZL 1DCPA 1SFOC 3S1NC 3FKIA 3HXAA 3OEPA 4BBRK 1INNA 5M5XK 4XSXA 2R92A 1O2BA 3G4CA 1YNJA 3FHZA 4KB2A 4RMFA 3HKZD 3G4AA 2D6FC 3T01A 3A8JA 4KC6A 3FKIK 3TFJA 3RZDC 3MMLB 4A3GC 2GSUA 2P8TA 1WOPA 4KB4A 1WQGA 5IOTA 3GTGK 1WSVA 1WQFA 3TFIA 2GSNA 1Y1WA 2E2HK 4BBSK 2ZFZA 1BJTA 3S2HK 2GAGC 2EBBA 1UV7A 3Q3QA 4X6AK 2NVYK 1USOA 3S1RC 5M3MK 4M1XA 2E2IC 5JFEA 3OPFA 2JA6A 4XCHA 2E2IK 4XLNA 5C44K 5FJ8K 2E2HA 1TWAA 3CAGA 5M5WK 2JA8C 1B4BA 4C3HK 1O25A 1Y1WC 3GTQC 1JVIA 4AYBL 4KMAA 4Q4ZA 1F93A 4A93C 2R93A 4C2MC 3S15C 1K83A 1O29A 1PJ6A 5E68A 1PJ5A 2E2IA 4A3JC 3GTJC 2JA6C 4Y52K 1O2AA 3HOUC 5C4JK 4KDDA 3HOYK 1XPPA 2V6SA 5IYCK 1Y1VA 3S1MK 3AD7C 2B63K 3GTQA 2WB1L 3EQLA 3RZOK 5IP9C 4KN7A 3RZDK 3TFHA 5IYCC 3WODA 3S1MC 4YFKA 1VRQC 4YG2A 4Y7NC 4A3BK 4GTBA 2NVXK 2PHCB 1VLOA 3LAPA 3GTPC 4BKWA 5M3FK 2R92K 1J6VA 1DD5A 1BGWA 3H0GA 5IYDC 3ADAC 4P5AA 2R7ZK 3PO3C 4C3JC 4ZH4A 1Y1VK 5C4XK 4OINA 4BLBA
chains in the Genus database with same CATH topology
1USMA 1DCPA 2V6UA 3JSTA 4C45A 1F93A 4WILA 2V6TA 3HXAA 1USOA 1DCOA 2EBBA 1DCHA 4LOWA 2V6SA 1RU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1USM A;  1DCP A;  2V6U A;  3JST A;  4C45 A;  1F93 A;  4WIL A;  2V6T A;  3HXA A;  1USO A;  1DCO A;  2EBB A;  1DCH A;  4LOW A;  2V6S A;  1RU0 A; 
#chains in the Genus database with same CATH topology
 4A3L C;  4A3C K;  2VUM K;  4OIO A;  3HOW K;  1SMY A;  2NVQ C;  1AB4 A;  3M4O C;  3S1Q K;  4P5B A;  3M3Y C;  3GTO C;  4A3K C;  3K7A K;  4GTL A;  2RH6 A;  2E2H C;  1TWA C;  1WOS A;  1WOO A;  3H0G K;  4G7H A;  3GTP A;  1WQH A;  3AQO A;  3L4J A;  1J6X A;  4C3H C;  2JA7 A;  4QIW D;  4BXX C;  1I6V A;  1PJ7 A;  4LQY A;  1R9T A;  4GTF A;  4QJV A;  3I4N K;  4O2D A;  4KMD A;  1TWC K;  2E2J K;  1XXB A;  4KAT A;  4BY7 K;  1YX2 A;  3S2D K;  1XZP B;  1I6H C;  1ISE A;  1I50 C;  1WCM C;  1HQM A;  2JA7 K;  3AQP A;  2KWA A;  2BE5 A;  2XCR B;  1J6W A;  2JA7 C;  2A68 A;  1BDF A;  2CFA A;  1TWC A;  5IOQ A;  5CHP A;  2CFA B;  1ZBS A;  1F7U A;  4ILD A;  4KN4 A;  2FQT A;  2A6E A;  2GSO A;  5IP9 K;  5IYB K;  1O24 A;  4BY1 K;  2VUM C;  4WIL A;  3DXJ A;  2Y3P A;  4A3B C;  5IYD K;  3S0X A;  1XZP A;  1EI6 A;  4PAB A;  3GTM A;  3N3Y A;  4G0U A;  4C3I C;  2NVT K;  4JK1 A;  2ZUE A;  1KQ4 A;  3GTK C;  1F9N A;  4GFQ A;  4LK1 A;  4PAA A;  2CW0 A;  3GTL K;  4YFX A;  4BBS C;  2ZUF A;  3GEE A;  4A3D C;  3HKZ L;  5C44 C;  1TWF K;  4J3N A;  1TWG A;  5IP7 C;  5D4D A;  4A3F K;  3CQZ A;  3K7A C;  4KAS A;  1Y1W K;  2VUM A;  3GTM K;  1EK8 A;  5HL8 A;  3GSI A;  3GTM C;  5EGE A;  1SFO K;  2YU9 K;  2JA5 A;  4BLA A;  2PA8 D;  1VGX A;  4A3M K;  1TWF A;  3GTJ K;  1DCH A;  2JA6 K;  2R93 C;  4A3I K;  1IS1 A;  1TWH C;  1I3Q K;  1TWG C;  4MEX A;  4A3I C;  4C2M K;  2E2J C;  1XXC A;  4P9S A;  4A3J K;  1SFO A;  3FKI C;  1IQ0 A;  2YU9 A;  1USM A;  2WB1 D;  1K83 K;  2JA5 C;  3A8K A;  3A8I A;  3IPJ A;  3GIR A;  5IYB C;  1IL2 A;  4G7O A;  4G0W A;  5L46 A;  2FQO A;  4WJ4 A;  3GDZ A;  3GTK A;  4XLP A;  2NVX C;  2A6H A;  1YCL A;  3AD8 C;  2GAH C;  3H3V L;  3AH5 A;  1YNN A;  3SZZ A;  3S14 K;  5JVO A;  1F7V A;  1XZQ A;  3QX3 A;  3M4O K;  4A3G K;  3HOV C;  1XXA A;  4LK0 A;  2WAQ L;  3GTG C;  1DCO A;  3S17 K;  1VJE A;  4QIW L;  1O26 A;  1TWH A;  1RU0 A;  3AD9 C;  3GTL A;  3M3Y K;  3HOZ K;  2JA8 K;  1ZYR A;  3BP8 C;  2PMZ D;  4Y52 C;  1G51 A;  3HOX C;  1TWA K;  2V6U A;  4XSZ A;  2O5J A;  1WCM A;  2PPB A;  4AYB D;  3N0B A;  1K83 C;  2JA5 K;  3I4N C;  3GTJ A;  1ZVU A;  4OIP A;  1TWC C;  1EFW A;  3PO2 C;  1O28 A;  4YFN A;  3NUH A;  1Y1V C;  3FOE A;  1XZQ B;  1HI9 A;  2B63 A;  2XCQ A;  3HOU K;  1WOR A;  4A93 K;  4G0V A;  2R92 C;  4KMU A;  3HOY C;  1IE0 A;  4MQ9 A;  5EGH A;  3S15 K;  3S14 C;  4DDQ A;  4KMH A;  4BBR C;  5FLM C;  3SZY A;  3HOV K;  3N0C A;  4QJV B;  3GTG A;  4C45 A;  4Y7N K;  1GE9 A;  4KAR A;  3S1Q C;  2R7Z A;  1JQW A;  1IBA A;  4LJZ A;  4BY1 C;  5IOS A;  2XCO A;  2B63 C;  4Q5S A;  1O27 A;  3GEH A;  4GZY A;  1JOE A;  1WSR A;  4C3J K;  4OIR A;  3V4G A;  2NVY A;  5TMC A;  4LR2 A;  4A3F C;  5TMF A;  2P5M A;  4FZB A;  3HOX K;  4LOW A;  3GTP K;  3TTG A;  1I50 K;  1EH1 A;  1ZQ1 C;  1TWG K;  1EQR A;  4LLG A;  3S1R K;  1V5V A;  4GTE A;  1B4A A;  1TWF C;  4A3C C;  2W7V A;  3HOW C;  1R9T K;  4G7Z A;  2RGR A;  5M5Y K;  3GEI A;  3JST A;  2R93 K;  1R9T C;  3VA7 A;  2NVY C;  3ERE D;  5C3E C;  3LAJ A;  1I50 A;  2YU9 C;  5C4J C;  3BP3 A;  5C3E K;  5CJ9 A;  5TJ3 A;  4KM9 A;  3RZO C;  1L0W A;  4GT9 A;  1I6H K;  3I4M K;  1WCM K;  5IOR A;  1I3Q C;  3GTQ K;  3PO2 K;  4C3I K;  3T00 A;  2NVT C;  4WJ3 M;  2NVX A;  3S1N K;  4GTA A;  2R7Z C;  3PO3 K;  4BY7 C;  4AH6 A;  4GTD A;  2A69 A;  1O2F B;  3L4K A;  2NVQ K;  1J98 A;  1C0A A;  3GTO K;  3S17 C;  3GTK K;  4KAW X;  5FLM K;  3H0G C;  4A3D K;  5C4X C;  2V6T A;  2WAQ D;  4KM8 A;  4A3L K;  2JH3 A;  3HOZ C;  3FOF A;  3S2H C;  2O5I A;  1WIH A;  3ORE A;  4X6A C;  4OIQ A;  3CQZ K;  3GTO A;  3GTL C;  3H3V D;  3LPX A;  3CQZ C;  1BS2 A;  3S16 C;  3T02 A;  5IP7 K;  4MEY A;  4A3M C;  3S16 K;  1IW7 A;  4NOI A;  4A3K K;  3S2D C;  1VH2 A;  1TWH K;  2PA8 L;  4FM9 A;  4GTC A;  2Y0S D;  1I3Q A;  2Y0S L;  3I4M C;  4A3E C;  1ZXO A;  4BXX K;  4A3E K;  3BUE A;  1X31 C;  2PMZ L;  1DCP A;  1SFO C;  3S1N C;  3FKI A;  3HXA A;  3OEP A;  4BBR K;  1INN A;  5M5X K;  4XSX A;  2R92 A;  1O2B A;  3G4C A;  1YNJ A;  3FHZ A;  4KB2 A;  4RMF A;  3HKZ D;  3G4A A;  2D6F C;  3T01 A;  3A8J A;  4KC6 A;  3FKI K;  3TFJ A;  3RZD C;  3MML B;  4A3G C;  2GSU A;  2P8T A;  1WOP A;  4KB4 A;  1WQG A;  5IOT A;  3GTG K;  1WSV A;  1WQF A;  3TFI A;  2GSN A;  1Y1W A;  2E2H K;  4BBS K;  2ZFZ A;  1BJT A;  3S2H K;  2GAG C;  2EBB A;  1UV7 A;  3Q3Q A;  4X6A K;  2NVY K;  1USO A;  3S1R C;  5M3M K;  4M1X A;  2E2I C;  5JFE A;  3OPF A;  2JA6 A;  4XCH A;  2E2I K;  4XLN A;  5C44 K;  5FJ8 K;  2E2H A;  1TWA A;  3CAG A;  5M5W K;  2JA8 C;  1B4B A;  4C3H K;  1O25 A;  1Y1W C;  3GTQ C;  1JVI A;  4AYB L;  4KMA A;  4Q4Z A;  1F93 A;  4A93 C;  2R93 A;  4C2M C;  3S15 C;  1K83 A;  1O29 A;  1PJ6 A;  5E68 A;  1PJ5 A;  2E2I A;  4A3J C;  3GTJ C;  2JA6 C;  4Y52 K;  1O2A A;  3HOU C;  5C4J K;  4KDD A;  3HOY K;  1XPP A;  2V6S A;  5IYC K;  1Y1V A;  3S1M K;  3AD7 C;  2B63 K;  3GTQ A;  2WB1 L;  3EQL A;  3RZO K;  5IP9 C;  4KN7 A;  3RZD K;  3TFH A;  5IYC C;  3WOD A;  3S1M C;  4YFK A;  1VRQ C;  4YG2 A;  4Y7N C;  4A3B K;  4GTB A;  2NVX K;  2PHC B;  1VLO A;  3LAP A;  3GTP C;  4BKW A;  5M3F K;  2R92 K;  1J6V A;  1DD5 A;  1BGW A;  3H0G A;  5IYD C;  3ADA C;  4P5A A;  2R7Z K;  3PO3 C;  4C3J C;  4ZH4 A;  1Y1V K;  5C4X K;  4OIN A;  4BLB A; 
#chains in the Genus database with same CATH homology
 1USM A;  1DCP A;  2V6U A;  3JST A;  4C45 A;  1F93 A;  4WIL A;  2V6T A;  3HXA A;  1USO A;  1DCO A;  2EBB A;  1DCH A;  4LOW A;  2V6S A;  1RU0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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