1USOA

Dcoh, a bifunctional protein-binding transcriptional coactivator, pro9leu mutant
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
77
structure length
77
Chain Sequence
b'DWEERENPKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
publication title Crystal Structure of Transcriptional Coactivator DCoH from Thermus Thermophilus
rcsb
source organism Thermus thermophilus
molecule tags Transcriptional stimulator
total genus 20
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1usoA00
1DCHA 1DCPA 1RU0A 1USOA 3HXAA 4WILA 3JSTA 4C45A 2EBBA 1DCOA 2V6TA 1USMA 2V6UA 2V6SA 4LOWA 1F93A
chains in the Genus database with same CATH superfamily
3A8IA 4KMUA 2E2HK 1ZYRA 5EGHA 5HL8A 4BXXC 2CFAA 3HOXK 1YCLA 3S2HK 4A93K 1O2AA 4GTBA 3VA7A 1Y1WA 3S1NC 5JFEA 2ZUFA 3HOWK 2R7ZK 5TMCA 2P8TA 3HOXC 5FJ8K 2GAHC 3S17K 4A93C 2NVYK 1SFOA 4FZBA 1WSRA 4KMDA 4LK1A 3FKIK 1O29A 1Y1WC 5C4JK 1SFOK 1I6HC 2NVYC 3ADAC 3N0CA 1B4AA 5C4JC 4BBRK 1SFOC 5M5XK 3HKZD 4A3GC 3GTLK 4Q4ZA 4QJVB 4G7ZA 3H0GA 4BBRC 2FQTA 1HI9A 5IP7K 2ZFZA 3H0GK 1TWAA 1K83K 4GZYA 2CFAB 4A3KC 1F7VA 1YNNA 3H0GC 5C44K 1TWGK 3FHZA 2B63K 4A3FC 1TWAC 1EI6A 1JQWA 3LPXA 3GEHA 2B63C 4A3JC 5M5WK 4MQ9A 4G0UA 3QX3A 4A3IK 5M3FK 4KATA 2NVTC 4AYBD 4GTEA 2E2JK 3S14C 1O24A 2V6SA 4PABA 3H3VD 1IQ0A 5M5YK 4M1XA 3OEPA 2VUMK 5IOTA 3GEIA 2GSNA 5IYCK 1TWCA 3T00A 2PMZL 2JA5A 2V6UA 1EH1A 4C2MC 3GTGA 5IYCC 4LQYA 4A3BC 4KASA 4OIOA 3GTMK 5IOQA 2KWAA 2JA6K 1EK8A 1TWCC 3M4OK 4A3LC 2JA5C 1USOA 4C3IK 2ZUEA 3GTGC 1HQMA 3WODA 3S2DK 2JA6C 2W7VA 2R93A 3OPFA 3HOUK 3FOFA 2JH3A 1JVIA 3S2DC 2BE5A 4XSZA 4G7HA 4GT9A 4ILDA 3HOUC 4XLPA 4P5BA 3AD9C 2R93C 1AB4A 2WAQL 3AD7C 3Q3QA 2E2HA 1DCOA 3TFHA 3HOVK 4KAWX 3A8JA 1I3QA 1WQFA 1IE0A 4OINA 1J6XA 2R92K 2A6EA 4MEYA 3PO2K 2R7ZA 1I3QK 4LLGA 2E2HC 2NVYA 1RU0A 2R92C 4XSXA 3PO2C 3S2HC 1I3QC 1WSVA 5IYDK 1XZPA 2A68A 3FKIA 4YFKA 5IP9K 3HOWC 4C45A 2R7ZC 1V5VA 1ZVUA 2GSOA 3S17C 3AH5A 1INNA 2XCQA 2NVXK 1L0WA 3GTLA 3FKIC 2PPBA 1Y1VK 3HOYK 5IORA 2YU9K 2RGRA 3BUEA 5FLMK 3HOYC 4GTFA 1K83A 4X6AK 4BY1K 3GTLC 4C3HK 4LR2A 5C3EK 1F93A 4C3JK 1TWGA 5IP7C 4BBSK 2B63A 1ZXOA 2CW0A 2PMZD 1K83C 1WOSA 1G51A 5C3EC 1O26A 4C3JC 3HOZK 3RZDK 3L4JA 4OIPA 5C44C 1XZPB 3GTOK 3N0BA 1TWGC 3EQLA 4A3DK 3OREA 1DD5A 1I6VA 3V4GA 3RZDC 4KARA 4LOWA 1J6VA 4LJZA 4J3NA 2E2IK 1WCMK 3GIRA 3FOEA 3GTKA 4A3DC 3GTJC 2WB1L 3CQZK 3A8KA 2VUMA 4A3IC 3GTKK 3I4MK 2E2JC 4PAAA 3LAJA 1IS1A 5L46A 1XPPA 1BJTA 2XCRB 3L4KA 5E68A 4A3CK 4A3MK 3GTKC 1SMYA 1O27A 4JK1A 1WQHA 3I4MC 4GTCA 4KM9A 3G4AA 1F9NA 4WILA 2VUMC 2WAQD 3GTMA 4Q5SA 1XZQA 4A3CC 4A3MC 2JA6A 2PA8D 1WQGA 1PJ6A 1TWFK 4LK0A 3GTPK 3RZOK 1ISEA 3BP8C 2O5JA 4NOIA 1KQ4A 3GTMC 3M4OC 1O2BA 2RH6A 1IL2A 1XXBA 3GTPC 4C3IC 4XCHA 3M3YK 4AH6A 4DDQA 2FQOA 2Y3PA 4BKWA 1F7UA 4O2DA 3M3YC 2D6FC 3G4CA 4KDDA 1I50K 4AYBL 3I4NK 5CJ9A 2R92A 2EBBA 3S16K 2A69A 3ERED 1O25A 1WIHA 4KN7A 1GE9A 3HOVC 1XXCA 1IW7A 1X31C 2P5MA 1VGXA 3GSIA 3CAGA 3PO3K 5TMFA 1VRQC 4BY7K 5IOSA 1O28A 3GTQA 1WORA 4GFQA 1EQRA 4FM9A 4Y52K 2PHCB 3GTQK 3PO3C 4BY7C 3S1NK 2NVXA 4WJ4A 3JSTA 4P9SA 5IYDC 1Y1VA 5IP9C 4Y52C 3S1QK 1XXAA 3GTQC 2YU9A 4YG2A 3S1QC 1Y1WK 1R9TA 2NVXC 1I6HK 2WB1D 3K7AK 4KN4A 1Y1VC 4XLNA 1C0AA 1R9TK 2GAGC 3AQOA 2YU9C 4G7OA 4QIWL 2NVQK 4BLAA 4KC6A 4KB2A 3K7AC 5FLMC 4KMAA 4MEXA 4A3GK 2Y0SL 1R9TC 4OIRA 4X6AC 4BY1C 3AQPA 4KMHA 4C3HC 4RMFA 2NVQC 4A3EK 3BP3A 3AD8C 3GTOA 1IBAA 4YFXA 4BBSC 5D4DA 4YFNA 1JOEA 4A3KK 1EFWA 4GTAA 3LAPA 4OIQA 4A3EC 1WOPA 5CHPA 2E2IA 1WCMA 5M3MK 3HOZC 1ZBSA 3T02A 1J98A 3CQZA 3GTOC 4A3FK 3S1MK 5C4XK 1TWAK 2JA8K 5JVOA 1O2FB 3S0XA 3IPJA 4A3JK 2GSUA 2E2IC 1WCMC 1TWHA 3GDZA 3S1MC 1BGWA 5C4XC 3T01A 2JA8C 3CQZC 3NUHA 3SZYA 2NVTK 4KM8A 3MMLB 1TWHK 3S14K 3TTGA 3HKZL 3S15K 3S1RK 1USMA 1TWFA 3DXJA 1TWHC 3GTPA 1PJ5A 4WJ3M 1WOOA 3GEEA 3S15C 1YNJA 3S1RC 4G0VA 1VH2A 4GTDA 1J6WA 4C2MK 1TWFC 1UV7A 1DCPA 3HXAA 4A3BK 3RZOC 4GTLA 2O5IA 1TWCK 1YX2A 4A3LK 2JA5K 3TFIA 2JA7A 1PJ7A 5EGEA 3GTGK 2A6HA 4P5AA 1I50A 2JA7K 3SZZA 1BDFA 1DCHA 4KB4A 1VJEA 1VLOA 2JA7C 4BLBA 1B4BA 4Y7NK 1I50C 2XCOA 3I4NC 3N3YA 3H3VL 4ZH4A 1XZQB 2V6TA 3GTJA 2R93K 5IYBK 3S16C 4QIWD 4Y7NC 5TJ3A 3GTJK 4BXXK 2Y0SD 1BS2A 4QJVA 5IYBC 3TFJA 4G0WA 2PA8L 1ZQ1C
chains in the Genus database with same CATH topology
1DCHA 1DCPA 1RU0A 1USOA 3HXAA 4WILA 3JSTA 4C45A 2EBBA 1DCOA 2V6TA 1USMA 2V6UA 2V6SA 4LOWA 1F93A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DCH A;  1DCP A;  1RU0 A;  1USO A;  3HXA A;  4WIL A;  3JST A;  4C45 A;  2EBB A;  1DCO A;  2V6T A;  1USM A;  2V6U A;  2V6S A;  4LOW A;  1F93 A; 
#chains in the Genus database with same CATH topology
 3A8I A;  4KMU A;  2E2H K;  1ZYR A;  5EGH A;  5HL8 A;  4BXX C;  2CFA A;  3HOX K;  1YCL A;  3S2H K;  4A93 K;  1O2A A;  4GTB A;  3VA7 A;  1Y1W A;  3S1N C;  5JFE A;  2ZUF A;  3HOW K;  2R7Z K;  5TMC A;  2P8T A;  3HOX C;  5FJ8 K;  2GAH C;  3S17 K;  4A93 C;  2NVY K;  1SFO A;  4FZB A;  1WSR A;  4KMD A;  4LK1 A;  3FKI K;  1O29 A;  1Y1W C;  5C4J K;  1SFO K;  1I6H C;  2NVY C;  3ADA C;  3N0C A;  1B4A A;  5C4J C;  4BBR K;  1SFO C;  5M5X K;  3HKZ D;  4A3G C;  3GTL K;  4Q4Z A;  4QJV B;  4G7Z A;  3H0G A;  4BBR C;  2FQT A;  1HI9 A;  5IP7 K;  2ZFZ A;  3H0G K;  1TWA A;  1K83 K;  4GZY A;  2CFA B;  4A3K C;  1F7V A;  1YNN A;  3H0G C;  5C44 K;  1TWG K;  3FHZ A;  2B63 K;  4A3F C;  1TWA C;  1EI6 A;  1JQW A;  3LPX A;  3GEH A;  2B63 C;  4A3J C;  5M5W K;  4MQ9 A;  4G0U A;  3QX3 A;  4A3I K;  5M3F K;  4KAT A;  2NVT C;  4AYB D;  4GTE A;  2E2J K;  3S14 C;  1O24 A;  2V6S A;  4PAB A;  3H3V D;  1IQ0 A;  5M5Y K;  4M1X A;  3OEP A;  2VUM K;  5IOT A;  3GEI A;  2GSN A;  5IYC K;  1TWC A;  3T00 A;  2PMZ L;  2JA5 A;  2V6U A;  1EH1 A;  4C2M C;  3GTG A;  5IYC C;  4LQY A;  4A3B C;  4KAS A;  4OIO A;  3GTM K;  5IOQ A;  2KWA A;  2JA6 K;  1EK8 A;  1TWC C;  3M4O K;  4A3L C;  2JA5 C;  1USO A;  4C3I K;  2ZUE A;  3GTG C;  1HQM A;  3WOD A;  3S2D K;  2JA6 C;  2W7V A;  2R93 A;  3OPF A;  3HOU K;  3FOF A;  2JH3 A;  1JVI A;  3S2D C;  2BE5 A;  4XSZ A;  4G7H A;  4GT9 A;  4ILD A;  3HOU C;  4XLP A;  4P5B A;  3AD9 C;  2R93 C;  1AB4 A;  2WAQ L;  3AD7 C;  3Q3Q A;  2E2H A;  1DCO A;  3TFH A;  3HOV K;  4KAW X;  3A8J A;  1I3Q A;  1WQF A;  1IE0 A;  4OIN A;  1J6X A;  2R92 K;  2A6E A;  4MEY A;  3PO2 K;  2R7Z A;  1I3Q K;  4LLG A;  2E2H C;  2NVY A;  1RU0 A;  2R92 C;  4XSX A;  3PO2 C;  3S2H C;  1I3Q C;  1WSV A;  5IYD K;  1XZP A;  2A68 A;  3FKI A;  4YFK A;  5IP9 K;  3HOW C;  4C45 A;  2R7Z C;  1V5V A;  1ZVU A;  2GSO A;  3S17 C;  3AH5 A;  1INN A;  2XCQ A;  2NVX K;  1L0W A;  3GTL A;  3FKI C;  2PPB A;  1Y1V K;  3HOY K;  5IOR A;  2YU9 K;  2RGR A;  3BUE A;  5FLM K;  3HOY C;  4GTF A;  1K83 A;  4X6A K;  4BY1 K;  3GTL C;  4C3H K;  4LR2 A;  5C3E K;  1F93 A;  4C3J K;  1TWG A;  5IP7 C;  4BBS K;  2B63 A;  1ZXO A;  2CW0 A;  2PMZ D;  1K83 C;  1WOS A;  1G51 A;  5C3E C;  1O26 A;  4C3J C;  3HOZ K;  3RZD K;  3L4J A;  4OIP A;  5C44 C;  1XZP B;  3GTO K;  3N0B A;  1TWG C;  3EQL A;  4A3D K;  3ORE A;  1DD5 A;  1I6V A;  3V4G A;  3RZD C;  4KAR A;  4LOW A;  1J6V A;  4LJZ A;  4J3N A;  2E2I K;  1WCM K;  3GIR A;  3FOE A;  3GTK A;  4A3D C;  3GTJ C;  2WB1 L;  3CQZ K;  3A8K A;  2VUM A;  4A3I C;  3GTK K;  3I4M K;  2E2J C;  4PAA A;  3LAJ A;  1IS1 A;  5L46 A;  1XPP A;  1BJT A;  2XCR B;  3L4K A;  5E68 A;  4A3C K;  4A3M K;  3GTK C;  1SMY A;  1O27 A;  4JK1 A;  1WQH A;  3I4M C;  4GTC A;  4KM9 A;  3G4A A;  1F9N A;  4WIL A;  2VUM C;  2WAQ D;  3GTM A;  4Q5S A;  1XZQ A;  4A3C C;  4A3M C;  2JA6 A;  2PA8 D;  1WQG A;  1PJ6 A;  1TWF K;  4LK0 A;  3GTP K;  3RZO K;  1ISE A;  3BP8 C;  2O5J A;  4NOI A;  1KQ4 A;  3GTM C;  3M4O C;  1O2B A;  2RH6 A;  1IL2 A;  1XXB A;  3GTP C;  4C3I C;  4XCH A;  3M3Y K;  4AH6 A;  4DDQ A;  2FQO A;  2Y3P A;  4BKW A;  1F7U A;  4O2D A;  3M3Y C;  2D6F C;  3G4C A;  4KDD A;  1I50 K;  4AYB L;  3I4N K;  5CJ9 A;  2R92 A;  2EBB A;  3S16 K;  2A69 A;  3ERE D;  1O25 A;  1WIH A;  4KN7 A;  1GE9 A;  3HOV C;  1XXC A;  1IW7 A;  1X31 C;  2P5M A;  1VGX A;  3GSI A;  3CAG A;  3PO3 K;  5TMF A;  1VRQ C;  4BY7 K;  5IOS A;  1O28 A;  3GTQ A;  1WOR A;  4GFQ A;  1EQR A;  4FM9 A;  4Y52 K;  2PHC B;  3GTQ K;  3PO3 C;  4BY7 C;  3S1N K;  2NVX A;  4WJ4 A;  3JST A;  4P9S A;  5IYD C;  1Y1V A;  5IP9 C;  4Y52 C;  3S1Q K;  1XXA A;  3GTQ C;  2YU9 A;  4YG2 A;  3S1Q C;  1Y1W K;  1R9T A;  2NVX C;  1I6H K;  2WB1 D;  3K7A K;  4KN4 A;  1Y1V C;  4XLN A;  1C0A A;  1R9T K;  2GAG C;  3AQO A;  2YU9 C;  4G7O A;  4QIW L;  2NVQ K;  4BLA A;  4KC6 A;  4KB2 A;  3K7A C;  5FLM C;  4KMA A;  4MEX A;  4A3G K;  2Y0S L;  1R9T C;  4OIR A;  4X6A C;  4BY1 C;  3AQP A;  4KMH A;  4C3H C;  4RMF A;  2NVQ C;  4A3E K;  3BP3 A;  3AD8 C;  3GTO A;  1IBA A;  4YFX A;  4BBS C;  5D4D A;  4YFN A;  1JOE A;  4A3K K;  1EFW A;  4GTA A;  3LAP A;  4OIQ A;  4A3E C;  1WOP A;  5CHP A;  2E2I A;  1WCM A;  5M3M K;  3HOZ C;  1ZBS A;  3T02 A;  1J98 A;  3CQZ A;  3GTO C;  4A3F K;  3S1M K;  5C4X K;  1TWA K;  2JA8 K;  5JVO A;  1O2F B;  3S0X A;  3IPJ A;  4A3J K;  2GSU A;  2E2I C;  1WCM C;  1TWH A;  3GDZ A;  3S1M C;  1BGW A;  5C4X C;  3T01 A;  2JA8 C;  3CQZ C;  3NUH A;  3SZY A;  2NVT K;  4KM8 A;  3MML B;  1TWH K;  3S14 K;  3TTG A;  3HKZ L;  3S15 K;  3S1R K;  1USM A;  1TWF A;  3DXJ A;  1TWH C;  3GTP A;  1PJ5 A;  4WJ3 M;  1WOO A;  3GEE A;  3S15 C;  1YNJ A;  3S1R C;  4G0V A;  1VH2 A;  4GTD A;  1J6W A;  4C2M K;  1TWF C;  1UV7 A;  1DCP A;  3HXA A;  4A3B K;  3RZO C;  4GTL A;  2O5I A;  1TWC K;  1YX2 A;  4A3L K;  2JA5 K;  3TFI A;  2JA7 A;  1PJ7 A;  5EGE A;  3GTG K;  2A6H A;  4P5A A;  1I50 A;  2JA7 K;  3SZZ A;  1BDF A;  1DCH A;  4KB4 A;  1VJE A;  1VLO A;  2JA7 C;  4BLB A;  1B4B A;  4Y7N K;  1I50 C;  2XCO A;  3I4N C;  3N3Y A;  3H3V L;  4ZH4 A;  1XZQ B;  2V6T A;  3GTJ A;  2R93 K;  5IYB K;  3S16 C;  4QIW D;  4Y7N C;  5TJ3 A;  3GTJ K;  4BXX K;  2Y0S D;  1BS2 A;  4QJV A;  5IYB C;  3TFJ A;  4G0W A;  2PA8 L;  1ZQ1 C; 
#chains in the Genus database with same CATH homology
 1DCH A;  1DCP A;  1RU0 A;  1USO A;  3HXA A;  4WIL A;  3JST A;  4C45 A;  2EBB A;  1DCO A;  2V6T A;  1USM A;  2V6U A;  2V6S A;  4LOW A;  1F93 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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