5HL8A

1.93 angstrom resolution crystal structure of a pullulanase-specific type ii secretion system integral cytoplasmic membrane protein gspl (c-terminal fragment; residues 309-397) from klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
81
structure length
81
Chain Sequence
HAPLVDRLSALQNILSETPGIRLRALSWDAAGNRLQLDIAAVSSRALEQFTQRAQPRFRVRPGDMITKPDGIEGQLTLEEN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
source organism Klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
publication title 1.93 Angstrom resolution crystal structure of a pullulanase-specific type II secretion system integral cytoplasmic membrane protein GspL (C-terminal fragment; residues 309-397) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
rcsb
molecule keywords Type II secretion system protein L
total genus 21
structure length 81
sequence length 81
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-01-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 5hl8A00
5HL8A 1UV7A 2W7VA
chains in the Genus database with same CATH superfamily
5M5WK 1TWAA 4KN4A 1TWHK 4KARA 2PMZL 3AD7C 4C2MK 2JA7C 3L4KA 1C0AA 2Y0SL 2E2IC 1HI9A 3S16K 3FOFA 1WCMK 4A3FK 4YG2A 2JA7A 3M3YC 1O24A 4MEYA 1R9TA 1BJTA 3G4AA 4XCHA 2R92C 1XZQB 4A3KK 2KWAA 5CJ9A 5TMFA 3S14C 2NVXK 4G0VA 2R92A 5EGHA 3GTGK 5IP9K 2PMZD 1TWHC 4C3HK 2VUMK 4C2MC 3EQLA 1Y1WK 5IORA 2Y0SD 2ZUFA 1IS1A 1XPPA 1TWHA 3AQPA 1WCMC 4A3FC 1WORA 2PPBA 4A3LK 5C4XK 4QJVA 4LJZA 4A3KC 1EFWA 2P8TA 3GIRA 2ZFZA 4G7ZA 3GTPC 2NVYK 4DDQA 4YFNA 3GTGC 5IP9C 4A3CK 4KAWX 2VUMC 4C3HC 2BE5A 2NVTK 1Y1WC 2JH3A 2NVXA 3S15K 1DCHA 1XZPB 3S1NK 3GTGA 4A3EK 2VUMA 1DCOA 2A68A 5IYCK 4Q4ZA 2GSUA 1V5VA 4GTEA 4A3LC 5C4XC 4BY7K 3S1QK 4KMAA 4LR2A 3TFJA 4P5AA 1IE0A 3FHZA 1WSVA 4MEXA 4A3CC 2NVTC 3GTKK 2JA8K 2NVYA 1ISEA 3S15C 3S1NC 3JSTA 3SZZA 1WOPA 1J6WA 2XCOA 3NUHA 3A8IA 5IYCC 3FOEA 5L46A 2PA8D 3FKIK 5IP7C 1SMYA 3N0BA 4A3MK 2WB1D 3S1QC 1YX2A 1XXAA 5TMCA 3HOXK 3GTMA 4LQYA 5C44C 4AH6A 3GTKC 4O2DA 3VA7A 2A6EA 4GFQA 4KC6A 4KM8A 3GTKA 2EBBA 1BDFA 1VJEA 1SFOK 1B4BA 4BKWA 1O29A 1PJ7A 3FKIC 1XZQA 4A3MC 2XCQA 3V4GA 2WAQL 3GEHA 4A3BK 2E2JK 3I4NK 3LAPA 3S14K 3BP8C 3S2DK 4GZYA 2CW0A 1SFOC 2NVQK 4BBSK 3HOUK 3TFIA 1WOSA 2YU9K 1I3QC 4YFXA 2CFAB 1EQRA 2WAQD 2JA5K 2E2IA 3S1RK 2V6UA 4JK1A 1IQ0A 2GSOA 4GTBA 4A3BC 4NOIA 4A3JK 2E2JC 3GTLK 3I4NC 3ADAC 1F9NA 4KMUA 1L0WA 2O5JA 3GTPK 5C3EK 2D6FC 1EK8A 4BY1K 3S2DC 1DCPA 2NVQC 4BBSC 2ZUEA 2W7VA 3HOUC 1J98A 3A8JA 2YU9C 1WQFA 3OREA 1O2AA 1ZBSA 3OPFA 2JA5C 3L4JA 1O27A 2YU9A 3S1RC 2XCRB 1WCMA 1ZVUA 3GTJC 1TWGK 4LLGA 2JA5A 1WQGA 4A3JC 3GTLC 5D4DA 4QIWL 5IOQA 1Y1VK 1TWFK 3SZYA 1YNJA 5C3EC 4BY1C 3GTLA 5IYDC 4XSXA 1YNNA 1O28A 3CQZK 4C3JK 1EI6A 3GTPA 4KB4A 3LAJA 1I6VA 3QX3A 1Y1WA 3BP3A 4OINA 4GTLA 5IOTA 4G7HA 4P9SA 4ILDA 2RH6A 3DXJA 5IP7K 4KMDA 1IBAA 1TWGC 1JOEA 4QIWD 5FJ8K 4WJ4A 4BBRK 3HOYK 1Y1VC 1TWFC 3S2HC 1TWGA 4KDDA 5C44K 1Y1VA 3CQZC 4C3JC 4BLAA 3HOWK 1INNA 4PABA 4X6AC 3CQZA 4Y7NK 5IOSA 5FLMK 3H0GK 4GTDA 1USOA 1HQMA 2R7ZK 4XLNA 4BBRC 2B63K 3HOYC 4QJVB 3I4MK 1VH2A 4ZH4A 5M3MK 3T02A 2RGRA 2Y3PA 4G0UA 3HOWC 1IW7A 1I50K 4LK1A 2CFAA 1IL2A 1RU0A 4Y7NC 5FLMC 5IYBK 3S17K 1O2FB 1VRQC 3H0GC 1I3QK 2JA6K 2R7ZC 4LOWA 3AD9C 1PJ6A 4GTCA 4GTFA 1UV7A 3H0GA 4WJ3M 3S0XA 2B63C 3FKIA 3I4MC 3N0CA 3GTQC 4LK0A 3BUEA 3WODA 4XSZA 1ZYRA 2B63A 1BGWA 1I50C 1WIHA 1XXCA 4A93K 4KMHA 1I50A 4Q5SA 3S17C 5IYBC 1R9TK 4YFKA 1PJ5A 2JA6C 1SFOA 3LPXA 1I6HK 4GTAA 1I3QA 2JA6A 3T01A 1TWAC 3GTJK 1GE9A 5HL8A 3S1MC 1XZPA 4XLPA 1O26A 3RZOK 3MMLB 3AD8C 4A93C 3N3YA 5IYDK 3PO2K 4Y52K 1WSRA 1ZXOA 1K83K 1R9TC 2E2HK 4PAAA 1USMA 1TWCK 3GTOK 2GAHC 1O2BA 3ERED 1I6HC 4WILA 4C45A 1JVIA 4OIRA 3HXAA 2FQTA 2A6HA 3S2HK 3PO3K 3GTJA 5C4JK 3RZOC 1F93A 4G7OA 4GT9A 1DD5A 4KB2A 4A3GK 1YCLA 3PO2C 4Y52C 3TTGA 1K83C 2E2HC 3S16C 5CHPA 3T00A 3HOZK 1WQHA 4X6AK 1WOOA 3GTOC 1TWCC 2GAGC 1K83A 2E2HA 4AYBL 2V6SA 3GTOA 1TWCA 4RMFA 2NVXC 3AH5A 2FQOA 5M5XK 3A8KA 3PO3C 5E68A 5C4JC 4M1XA 4A3GC 2P5MA 1TWFA 2R93K 4KATA 3HOZC 3CAGA 4OIPA 4AYBD 4FZBA 2PA8L 4J3NA 3GTMK 4OIQA 2WB1L 3G4CA 3HOVK 4FM9A 5JVOA 4BXXK 2NVYC 3GTQK 4OIOA 3M4OK 4A3EC 1G51A 4KASA 5M3FK 2R93C 3Q3QA 1F7UA 1VGXA 3GDZA 2R93A 3K7AK 1KQ4A 3RZDK 3GTMC 4BY7C 1B4AA 3GEEA 3HOVC 3H3VL 4BXXC 4A3DK 5EGEA 2V6TA 1X31C 4A3IK 4C3IK 5M5YK 1J6VA 2R7ZA 2GSNA 1TWAK 1JQWA 4KM9A 3HKZL 2JA8C 1J6XA 3S1MK 1EH1A 4MQ9A 1AB4A 3M4OC 5TJ3A 4BLBA 3GTQA 1BS2A 1VLOA 3GSIA 2A69A 3AQOA 2JA7K 3OEPA 1ZQ1C 2E2IK 3K7AC 1XXBA 3GEIA 3RZDC 3H3VD 4G0WA 3M3YK 1O25A 4KN7A 4A3DC 3IPJA 3HOXC 2R92K 4A3IC 4C3IC 2O5IA 5JFEA 3HKZD 2PHCB 4P5BA 1F7VA 3TFHA
chains in the Genus database with same CATH topology
5HL8A 1UV7A 2W7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL8 A;  1UV7 A;  2W7V A; 
#chains in the Genus database with same CATH topology
 5M5W K;  1TWA A;  4KN4 A;  1TWH K;  4KAR A;  2PMZ L;  3AD7 C;  4C2M K;  2JA7 C;  3L4K A;  1C0A A;  2Y0S L;  2E2I C;  1HI9 A;  3S16 K;  3FOF A;  1WCM K;  4A3F K;  4YG2 A;  2JA7 A;  3M3Y C;  1O24 A;  4MEY A;  1R9T A;  1BJT A;  3G4A A;  4XCH A;  2R92 C;  1XZQ B;  4A3K K;  2KWA A;  5CJ9 A;  5TMF A;  3S14 C;  2NVX K;  4G0V A;  2R92 A;  5EGH A;  3GTG K;  5IP9 K;  2PMZ D;  1TWH C;  4C3H K;  2VUM K;  4C2M C;  3EQL A;  1Y1W K;  5IOR A;  2Y0S D;  2ZUF A;  1IS1 A;  1XPP A;  1TWH A;  3AQP A;  1WCM C;  4A3F C;  1WOR A;  2PPB A;  4A3L K;  5C4X K;  4QJV A;  4LJZ A;  4A3K C;  1EFW A;  2P8T A;  3GIR A;  2ZFZ A;  4G7Z A;  3GTP C;  2NVY K;  4DDQ A;  4YFN A;  3GTG C;  5IP9 C;  4A3C K;  4KAW X;  2VUM C;  4C3H C;  2BE5 A;  2NVT K;  1Y1W C;  2JH3 A;  2NVX A;  3S15 K;  1DCH A;  1XZP B;  3S1N K;  3GTG A;  4A3E K;  2VUM A;  1DCO A;  2A68 A;  5IYC K;  4Q4Z A;  2GSU A;  1V5V A;  4GTE A;  4A3L C;  5C4X C;  4BY7 K;  3S1Q K;  4KMA A;  4LR2 A;  3TFJ A;  4P5A A;  1IE0 A;  3FHZ A;  1WSV A;  4MEX A;  4A3C C;  2NVT C;  3GTK K;  2JA8 K;  2NVY A;  1ISE A;  3S15 C;  3S1N C;  3JST A;  3SZZ A;  1WOP A;  1J6W A;  2XCO A;  3NUH A;  3A8I A;  5IYC C;  3FOE A;  5L46 A;  2PA8 D;  3FKI K;  5IP7 C;  1SMY A;  3N0B A;  4A3M K;  2WB1 D;  3S1Q C;  1YX2 A;  1XXA A;  5TMC A;  3HOX K;  3GTM A;  4LQY A;  5C44 C;  4AH6 A;  3GTK C;  4O2D A;  3VA7 A;  2A6E A;  4GFQ A;  4KC6 A;  4KM8 A;  3GTK A;  2EBB A;  1BDF A;  1VJE A;  1SFO K;  1B4B A;  4BKW A;  1O29 A;  1PJ7 A;  3FKI C;  1XZQ A;  4A3M C;  2XCQ A;  3V4G A;  2WAQ L;  3GEH A;  4A3B K;  2E2J K;  3I4N K;  3LAP A;  3S14 K;  3BP8 C;  3S2D K;  4GZY A;  2CW0 A;  1SFO C;  2NVQ K;  4BBS K;  3HOU K;  3TFI A;  1WOS A;  2YU9 K;  1I3Q C;  4YFX A;  2CFA B;  1EQR A;  2WAQ D;  2JA5 K;  2E2I A;  3S1R K;  2V6U A;  4JK1 A;  1IQ0 A;  2GSO A;  4GTB A;  4A3B C;  4NOI A;  4A3J K;  2E2J C;  3GTL K;  3I4N C;  3ADA C;  1F9N A;  4KMU A;  1L0W A;  2O5J A;  3GTP K;  5C3E K;  2D6F C;  1EK8 A;  4BY1 K;  3S2D C;  1DCP A;  2NVQ C;  4BBS C;  2ZUE A;  2W7V A;  3HOU C;  1J98 A;  3A8J A;  2YU9 C;  1WQF A;  3ORE A;  1O2A A;  1ZBS A;  3OPF A;  2JA5 C;  3L4J A;  1O27 A;  2YU9 A;  3S1R C;  2XCR B;  1WCM A;  1ZVU A;  3GTJ C;  1TWG K;  4LLG A;  2JA5 A;  1WQG A;  4A3J C;  3GTL C;  5D4D A;  4QIW L;  5IOQ A;  1Y1V K;  1TWF K;  3SZY A;  1YNJ A;  5C3E C;  4BY1 C;  3GTL A;  5IYD C;  4XSX A;  1YNN A;  1O28 A;  3CQZ K;  4C3J K;  1EI6 A;  3GTP A;  4KB4 A;  3LAJ A;  1I6V A;  3QX3 A;  1Y1W A;  3BP3 A;  4OIN A;  4GTL A;  5IOT A;  4G7H A;  4P9S A;  4ILD A;  2RH6 A;  3DXJ A;  5IP7 K;  4KMD A;  1IBA A;  1TWG C;  1JOE A;  4QIW D;  5FJ8 K;  4WJ4 A;  4BBR K;  3HOY K;  1Y1V C;  1TWF C;  3S2H C;  1TWG A;  4KDD A;  5C44 K;  1Y1V A;  3CQZ C;  4C3J C;  4BLA A;  3HOW K;  1INN A;  4PAB A;  4X6A C;  3CQZ A;  4Y7N K;  5IOS A;  5FLM K;  3H0G K;  4GTD A;  1USO A;  1HQM A;  2R7Z K;  4XLN A;  4BBR C;  2B63 K;  3HOY C;  4QJV B;  3I4M K;  1VH2 A;  4ZH4 A;  5M3M K;  3T02 A;  2RGR A;  2Y3P A;  4G0U A;  3HOW C;  1IW7 A;  1I50 K;  4LK1 A;  2CFA A;  1IL2 A;  1RU0 A;  4Y7N C;  5FLM C;  5IYB K;  3S17 K;  1O2F B;  1VRQ C;  3H0G C;  1I3Q K;  2JA6 K;  2R7Z C;  4LOW A;  3AD9 C;  1PJ6 A;  4GTC A;  4GTF A;  1UV7 A;  3H0G A;  4WJ3 M;  3S0X A;  2B63 C;  3FKI A;  3I4M C;  3N0C A;  3GTQ C;  4LK0 A;  3BUE A;  3WOD A;  4XSZ A;  1ZYR A;  2B63 A;  1BGW A;  1I50 C;  1WIH A;  1XXC A;  4A93 K;  4KMH A;  1I50 A;  4Q5S A;  3S17 C;  5IYB C;  1R9T K;  4YFK A;  1PJ5 A;  2JA6 C;  1SFO A;  3LPX A;  1I6H K;  4GTA A;  1I3Q A;  2JA6 A;  3T01 A;  1TWA C;  3GTJ K;  1GE9 A;  5HL8 A;  3S1M C;  1XZP A;  4XLP A;  1O26 A;  3RZO K;  3MML B;  3AD8 C;  4A93 C;  3N3Y A;  5IYD K;  3PO2 K;  4Y52 K;  1WSR A;  1ZXO A;  1K83 K;  1R9T C;  2E2H K;  4PAA A;  1USM A;  1TWC K;  3GTO K;  2GAH C;  1O2B A;  3ERE D;  1I6H C;  4WIL A;  4C45 A;  1JVI A;  4OIR A;  3HXA A;  2FQT A;  2A6H A;  3S2H K;  3PO3 K;  3GTJ A;  5C4J K;  3RZO C;  1F93 A;  4G7O A;  4GT9 A;  1DD5 A;  4KB2 A;  4A3G K;  1YCL A;  3PO2 C;  4Y52 C;  3TTG A;  1K83 C;  2E2H C;  3S16 C;  5CHP A;  3T00 A;  3HOZ K;  1WQH A;  4X6A K;  1WOO A;  3GTO C;  1TWC C;  2GAG C;  1K83 A;  2E2H A;  4AYB L;  2V6S A;  3GTO A;  1TWC A;  4RMF A;  2NVX C;  3AH5 A;  2FQO A;  5M5X K;  3A8K A;  3PO3 C;  5E68 A;  5C4J C;  4M1X A;  4A3G C;  2P5M A;  1TWF A;  2R93 K;  4KAT A;  3HOZ C;  3CAG A;  4OIP A;  4AYB D;  4FZB A;  2PA8 L;  4J3N A;  3GTM K;  4OIQ A;  2WB1 L;  3G4C A;  3HOV K;  4FM9 A;  5JVO A;  4BXX K;  2NVY C;  3GTQ K;  4OIO A;  3M4O K;  4A3E C;  1G51 A;  4KAS A;  5M3F K;  2R93 C;  3Q3Q A;  1F7U A;  1VGX A;  3GDZ A;  2R93 A;  3K7A K;  1KQ4 A;  3RZD K;  3GTM C;  4BY7 C;  1B4A A;  3GEE A;  3HOV C;  3H3V L;  4BXX C;  4A3D K;  5EGE A;  2V6T A;  1X31 C;  4A3I K;  4C3I K;  5M5Y K;  1J6V A;  2R7Z A;  2GSN A;  1TWA K;  1JQW A;  4KM9 A;  3HKZ L;  2JA8 C;  1J6X A;  3S1M K;  1EH1 A;  4MQ9 A;  1AB4 A;  3M4O C;  5TJ3 A;  4BLB A;  3GTQ A;  1BS2 A;  1VLO A;  3GSI A;  2A69 A;  3AQO A;  2JA7 K;  3OEP A;  1ZQ1 C;  2E2I K;  3K7A C;  1XXB A;  3GEI A;  3RZD C;  3H3V D;  4G0W A;  3M3Y K;  1O25 A;  4KN7 A;  4A3D C;  3IPJ A;  3HOX C;  2R92 K;  4A3I C;  4C3I C;  2O5I A;  5JFE A;  3HKZ D;  2PHC B;  4P5B A;  1F7V A;  3TFH A; 
#chains in the Genus database with same CATH homology
 5HL8 A;  1UV7 A;  2W7V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...