5HL8A

1.93 angstrom resolution crystal structure of a pullulanase-specific type ii secretion system integral cytoplasmic membrane protein gspl (c-terminal fragment; residues 309-397) from klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
81
structure length
81
Chain Sequence
HAPLVDRLSALQNILSETPGIRLRALSWDAAGNRLQLDIAAVSSRALEQFTQRAQPRFRVRPGDMITKPDGIEGQLTLEEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Type II secretion system protein L
publication title 1.93 Angstrom resolution crystal structure of a pullulanase-specific type II secretion system integral cytoplasmic membrane protein GspL (C-terminal fragment; residues 309-397) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
rcsb
source organism Klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
molecule tags Protein transport
total genus 21
structure length 81
sequence length 81
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-01-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 5hl8A00
1UV7A 2W7VA 5HL8A
chains in the Genus database with same CATH superfamily
2YU9A 4C3JK 1TWCC 4BXXC 1XZPB 5C44K 4YFNA 4P5AA 4A3FK 1VH2A 3V4GA 1ZBSA 5TMFA 2GAGC 3HOWK 2NVQK 3I4MC 1ZVUA 5IP7C 3S1QC 4C2MC 4GFQA 3FKIC 3S17C 1BGWA 1PJ5A 3DXJA 1J6VA 3TFHA 3S2HC 2CW0A 1TWFC 3M4OC 4PAAA 1XXCA 5EGEA 4GTLA 1BDFA 2VUMC 2PMZL 4GTBA 4GTFA 3ADAC 2JA8K 3GTKK 4KB2A 4KATA 4C3IK 3HOYK 5IP9C 5IOSA 3GTOA 3S16C 4GTDA 5CJ9A 4BBSK 3AH5A 4A3EC 4A3IC 2RH6A 4DDQA 1I3QA 3SZZA 3HOZK 2JA6K 2R7ZK 1XZQA 4A3MC 3GTPA 4A3LK 1O26A 4ZH4A 1ZXOA 3GEHA 3FOEA 3K7AK 4C45A 4OIPA 1SFOK 2NVYA 3AD7C 3GTQK 4BY1C 3S14C 3WODA 1RU0A 4A93C 4G0VA 4G0UA 1TWCK 2WAQL 4YG2A 3HOUK 4XSZA 2FQOA 2R93A 4Y52K 3EQLA 1EH1A 2JH3A 1VLOA 2P5MA 2JA7K 2A68A 1UV7A 3FKIK 3S2DC 1I6VA 4JK1A 1K83C 2NVXC 3H3VD 3I4NC 4QJVA 1XPPA 3S0XA 2E2IK 1C0AA 1X31C 1VRQC 1YNNA 2E2HC 5M5XK 3GTJK 1WCMC 5IYDC 1WOPA 5EGHA 3CQZK 1YX2A 1IQ0A 4KMAA 3GTKA 1G51A 2GSUA 3VA7A 5IP9K 1R9TA 4BY7K 3S1RC 2R92K 3HXAA 4G7ZA 5C4JC 5C4XK 3GTGA 3IPJA 1F93A 1TWAK 4BBRC 1BS2A 2JA6A 2R7ZA 2CFAB 2WB1D 1TWHC 3N0CA 3HOVC 4KDDA 3GTLC 1TWGC 5C3EC 1B4BA 1WQGA 1J98A 3L4KA 2JA5K 1SFOA 1WQHA 3GTQA 3OREA 4GTAA 1Y1VK 2E2JK 1O28A 4MEYA 5IOQA 4P9SA 3AQOA 1O29A 3ERED 1TWCA 4BKWA 3N3YA 2W7VA 5JFEA 5IYCC 3M3YC 3H3VL 3QX3A 4G7HA 2B63C 3PO2K 4A3BK 4G7OA 3S1MK 2JA7A 1WOSA 2V6SA 4LK0A 1F7UA 3TFJA 1K83K 2YU9C 3LAJA 3BP8C 1O2FB 1EFWA 4BLBA 1DD5A 4BLAA 2E2IA 4J3NA 4A3GC 4RMFA 2NVTC 3RZOC 5IYBC 4KM8A 3GTJA 4M1XA 3CQZA 2A6EA 3HKZD 4LK1A 4GT9A 3A8KA 2WB1L 4A3JC 2R92A 2BE5A 3PO3C 4A3CC 3T02A 5M5WK 1HI9A 4AYBD 4P5BA 1TWAA 4A3KK 3GTMK 3H0GK 1Y1WK 5M3MK 4Y7NC 3S1NC 1WORA 3HOVK 4A3DK 4MEXA 1I50K 5FLMC 1WSVA 1TWGK 4OIRA 1O2AA 1V5VA 4WILA 3GTOC 2JA5A 3GSIA 1EQRA 4C3HC 1Y1VA 1IE0A 3GIRA 1I3QC 3A8JA 4GTEA 4YFKA 3GTPC 4BXXK 1XZQB 5IORA 4KARA 5IYCK 3BP3A 4ILDA 5IOTA 4NOIA 5FJ8K 3I4MK 5IP7K 3S1QK 1YCLA 4C2MK 2NVYC 3S17K 2GAHC 3S2HK 3RZDC 2GSNA 4C3JC 1TWFK 3M4OK 3HKZL 3LPXA 5C44C 2PA8D 2R93C 4A3FC 2FQTA 2VUMK 2ZUEA 1IS1A 3HOWC 1GE9A 4AYBL 3A8IA 4KMDA 1USMA 1IBAA 3S16K 3PO3K 4KAWX 4KMUA 4QJVB 2Y0SD 4A3EK 2RGRA 4A3IK 3T00A 1I6HC 1L0WA 4XCHA 4A3MK 1J6XA 1EI6A 4Q5SA 1YNJA 1DCPA 3GTMA 3H0GA 1Y1WA 4Y7NK 2JA8C 3MMLB 3GTKC 2XCQA 4C3IC 1I50A 4KC6A 1R9TC 3HOYC 4BY1K 3S14K 2PMZD 4A93K 4KN7A 3GTGC 1WSRA 4BBSC 1O25A 5E68A 1XZPA 5L46A 2V6TA 3GTPK 3HOZC 2JA6C 2R7ZC 3G4AA 4A3LC 5D4DA 4KN4A 4X6AC 1IW7A 3T01A 2ZUFA 4KMHA 3K7AC 1F9NA 3S15C 4KASA 2PA8L 4O2DA 1SFOC 1USOA 3GTQC 3S2DK 1HQMA 3FKIA 2ZFZA 3RZDK 2NVXK 1BJTA 5M5YK 3I4NK 1TWFA 4GZYA 3HOUC 1SMYA 2E2HK 2R93K 4QIWD 1KQ4A 2D6FC 2V6UA 3JSTA 1WCMK 4Y52C 4YFXA 2VUMA 5IYDK 3TTGA 3LAPA 3HOXC 1JOEA 2Y0SL 2WAQD 2GSOA 4Q4ZA 2JA7C 3G4CA 4WJ4A 3S1RK 4KB4A 1AB4A 5C4JK 2E2IC 4LJZA 4BBRK 1I6HK 4AH6A 1TWHK 3AD9C 3GTJC 3GEEA 3FOFA 2PPBA 3CQZC 3GTLK 5C3EK 1ZYRA 3OEPA 1R9TK 4BY7C 2R92C 4XSXA 1VJEA 3GTGK 5C4XC 2A6HA 1O2BA 1TWAC 4FZBA 3L4JA 1WQFA 3CAGA 1DCHA 3SZYA 5JVOA 3M3YK 1EK8A 4X6AK 5TMCA 5CHPA 4LR2A 4OIOA 3S15K 1J6WA 2B63K 1PJ6A 2JA5C 4QIWL 2XCRB 2O5JA 1Y1VC 2E2JC 2YU9K 1K83A 3AD8C 4G0WA 2NVXA 1ZQ1C 1F7VA 3FHZA 4MQ9A 3OPFA 1JQWA 4A3GK 2E2HA 4WJ3M 2NVTK 1INNA 2P8TA 3RZOK 5IYBK 1WCMA 2NVQC 2Y3PA 3HOXK 3Q3QA 3PO2C 4A3BC 3S1MC 4OINA 2A69A 1WOOA 1ISEA 2XCOA 4A3JK 4A3CK 4GTCA 3TFIA 1WIHA 2CFAA 2KWAA 3GDZA 2EBBA 1XXAA 2O5IA 1TWHA 3S1NK 1PJ7A 4FM9A 3GEIA 5FLMK 3N0BA 3GTLA 4OIQA 1TWGA 4LLGA 3AQPA 3GTOK 5M3FK 1XXBA 4C3HK 4XLPA 1IL2A 1I3QK 4LQYA 1JVIA 1DCOA 3NUHA 3BUEA 4A3KC 4KM9A 1VGXA 3GTMC 3H0GC 1Y1WC 5HL8A 1B4AA 4LOWA 2PHCB 4A3DC 1I50C 4XLNA 5TJ3A 2NVYK 4PABA 1O27A 2B63A 1O24A
chains in the Genus database with same CATH topology
1UV7A 2W7VA 5HL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UV7 A;  2W7V A;  5HL8 A; 
#chains in the Genus database with same CATH topology
 2YU9 A;  4C3J K;  1TWC C;  4BXX C;  1XZP B;  5C44 K;  4YFN A;  4P5A A;  4A3F K;  1VH2 A;  3V4G A;  1ZBS A;  5TMF A;  2GAG C;  3HOW K;  2NVQ K;  3I4M C;  1ZVU A;  5IP7 C;  3S1Q C;  4C2M C;  4GFQ A;  3FKI C;  3S17 C;  1BGW A;  1PJ5 A;  3DXJ A;  1J6V A;  3TFH A;  3S2H C;  2CW0 A;  1TWF C;  3M4O C;  4PAA A;  1XXC A;  5EGE A;  4GTL A;  1BDF A;  2VUM C;  2PMZ L;  4GTB A;  4GTF A;  3ADA C;  2JA8 K;  3GTK K;  4KB2 A;  4KAT A;  4C3I K;  3HOY K;  5IP9 C;  5IOS A;  3GTO A;  3S16 C;  4GTD A;  5CJ9 A;  4BBS K;  3AH5 A;  4A3E C;  4A3I C;  2RH6 A;  4DDQ A;  1I3Q A;  3SZZ A;  3HOZ K;  2JA6 K;  2R7Z K;  1XZQ A;  4A3M C;  3GTP A;  4A3L K;  1O26 A;  4ZH4 A;  1ZXO A;  3GEH A;  3FOE A;  3K7A K;  4C45 A;  4OIP A;  1SFO K;  2NVY A;  3AD7 C;  3GTQ K;  4BY1 C;  3S14 C;  3WOD A;  1RU0 A;  4A93 C;  4G0V A;  4G0U A;  1TWC K;  2WAQ L;  4YG2 A;  3HOU K;  4XSZ A;  2FQO A;  2R93 A;  4Y52 K;  3EQL A;  1EH1 A;  2JH3 A;  1VLO A;  2P5M A;  2JA7 K;  2A68 A;  1UV7 A;  3FKI K;  3S2D C;  1I6V A;  4JK1 A;  1K83 C;  2NVX C;  3H3V D;  3I4N C;  4QJV A;  1XPP A;  3S0X A;  2E2I K;  1C0A A;  1X31 C;  1VRQ C;  1YNN A;  2E2H C;  5M5X K;  3GTJ K;  1WCM C;  5IYD C;  1WOP A;  5EGH A;  3CQZ K;  1YX2 A;  1IQ0 A;  4KMA A;  3GTK A;  1G51 A;  2GSU A;  3VA7 A;  5IP9 K;  1R9T A;  4BY7 K;  3S1R C;  2R92 K;  3HXA A;  4G7Z A;  5C4J C;  5C4X K;  3GTG A;  3IPJ A;  1F93 A;  1TWA K;  4BBR C;  1BS2 A;  2JA6 A;  2R7Z A;  2CFA B;  2WB1 D;  1TWH C;  3N0C A;  3HOV C;  4KDD A;  3GTL C;  1TWG C;  5C3E C;  1B4B A;  1WQG A;  1J98 A;  3L4K A;  2JA5 K;  1SFO A;  1WQH A;  3GTQ A;  3ORE A;  4GTA A;  1Y1V K;  2E2J K;  1O28 A;  4MEY A;  5IOQ A;  4P9S A;  3AQO A;  1O29 A;  3ERE D;  1TWC A;  4BKW A;  3N3Y A;  2W7V A;  5JFE A;  5IYC C;  3M3Y C;  3H3V L;  3QX3 A;  4G7H A;  2B63 C;  3PO2 K;  4A3B K;  4G7O A;  3S1M K;  2JA7 A;  1WOS A;  2V6S A;  4LK0 A;  1F7U A;  3TFJ A;  1K83 K;  2YU9 C;  3LAJ A;  3BP8 C;  1O2F B;  1EFW A;  4BLB A;  1DD5 A;  4BLA A;  2E2I A;  4J3N A;  4A3G C;  4RMF A;  2NVT C;  3RZO C;  5IYB C;  4KM8 A;  3GTJ A;  4M1X A;  3CQZ A;  2A6E A;  3HKZ D;  4LK1 A;  4GT9 A;  3A8K A;  2WB1 L;  4A3J C;  2R92 A;  2BE5 A;  3PO3 C;  4A3C C;  3T02 A;  5M5W K;  1HI9 A;  4AYB D;  4P5B A;  1TWA A;  4A3K K;  3GTM K;  3H0G K;  1Y1W K;  5M3M K;  4Y7N C;  3S1N C;  1WOR A;  3HOV K;  4A3D K;  4MEX A;  1I50 K;  5FLM C;  1WSV A;  1TWG K;  4OIR A;  1O2A A;  1V5V A;  4WIL A;  3GTO C;  2JA5 A;  3GSI A;  1EQR A;  4C3H C;  1Y1V A;  1IE0 A;  3GIR A;  1I3Q C;  3A8J A;  4GTE A;  4YFK A;  3GTP C;  4BXX K;  1XZQ B;  5IOR A;  4KAR A;  5IYC K;  3BP3 A;  4ILD A;  5IOT A;  4NOI A;  5FJ8 K;  3I4M K;  5IP7 K;  3S1Q K;  1YCL A;  4C2M K;  2NVY C;  3S17 K;  2GAH C;  3S2H K;  3RZD C;  2GSN A;  4C3J C;  1TWF K;  3M4O K;  3HKZ L;  3LPX A;  5C44 C;  2PA8 D;  2R93 C;  4A3F C;  2FQT A;  2VUM K;  2ZUE A;  1IS1 A;  3HOW C;  1GE9 A;  4AYB L;  3A8I A;  4KMD A;  1USM A;  1IBA A;  3S16 K;  3PO3 K;  4KAW X;  4KMU A;  4QJV B;  2Y0S D;  4A3E K;  2RGR A;  4A3I K;  3T00 A;  1I6H C;  1L0W A;  4XCH A;  4A3M K;  1J6X A;  1EI6 A;  4Q5S A;  1YNJ A;  1DCP A;  3GTM A;  3H0G A;  1Y1W A;  4Y7N K;  2JA8 C;  3MML B;  3GTK C;  2XCQ A;  4C3I C;  1I50 A;  4KC6 A;  1R9T C;  3HOY C;  4BY1 K;  3S14 K;  2PMZ D;  4A93 K;  4KN7 A;  3GTG C;  1WSR A;  4BBS C;  1O25 A;  5E68 A;  1XZP A;  5L46 A;  2V6T A;  3GTP K;  3HOZ C;  2JA6 C;  2R7Z C;  3G4A A;  4A3L C;  5D4D A;  4KN4 A;  4X6A C;  1IW7 A;  3T01 A;  2ZUF A;  4KMH A;  3K7A C;  1F9N A;  3S15 C;  4KAS A;  2PA8 L;  4O2D A;  1SFO C;  1USO A;  3GTQ C;  3S2D K;  1HQM A;  3FKI A;  2ZFZ A;  3RZD K;  2NVX K;  1BJT A;  5M5Y K;  3I4N K;  1TWF A;  4GZY A;  3HOU C;  1SMY A;  2E2H K;  2R93 K;  4QIW D;  1KQ4 A;  2D6F C;  2V6U A;  3JST A;  1WCM K;  4Y52 C;  4YFX A;  2VUM A;  5IYD K;  3TTG A;  3LAP A;  3HOX C;  1JOE A;  2Y0S L;  2WAQ D;  2GSO A;  4Q4Z A;  2JA7 C;  3G4C A;  4WJ4 A;  3S1R K;  4KB4 A;  1AB4 A;  5C4J K;  2E2I C;  4LJZ A;  4BBR K;  1I6H K;  4AH6 A;  1TWH K;  3AD9 C;  3GTJ C;  3GEE A;  3FOF A;  2PPB A;  3CQZ C;  3GTL K;  5C3E K;  1ZYR A;  3OEP A;  1R9T K;  4BY7 C;  2R92 C;  4XSX A;  1VJE A;  3GTG K;  5C4X C;  2A6H A;  1O2B A;  1TWA C;  4FZB A;  3L4J A;  1WQF A;  3CAG A;  1DCH A;  3SZY A;  5JVO A;  3M3Y K;  1EK8 A;  4X6A K;  5TMC A;  5CHP A;  4LR2 A;  4OIO A;  3S15 K;  1J6W A;  2B63 K;  1PJ6 A;  2JA5 C;  4QIW L;  2XCR B;  2O5J A;  1Y1V C;  2E2J C;  2YU9 K;  1K83 A;  3AD8 C;  4G0W A;  2NVX A;  1ZQ1 C;  1F7V A;  3FHZ A;  4MQ9 A;  3OPF A;  1JQW A;  4A3G K;  2E2H A;  4WJ3 M;  2NVT K;  1INN A;  2P8T A;  3RZO K;  5IYB K;  1WCM A;  2NVQ C;  2Y3P A;  3HOX K;  3Q3Q A;  3PO2 C;  4A3B C;  3S1M C;  4OIN A;  2A69 A;  1WOO A;  1ISE A;  2XCO A;  4A3J K;  4A3C K;  4GTC A;  3TFI A;  1WIH A;  2CFA A;  2KWA A;  3GDZ A;  2EBB A;  1XXA A;  2O5I A;  1TWH A;  3S1N K;  1PJ7 A;  4FM9 A;  3GEI A;  5FLM K;  3N0B A;  3GTL A;  4OIQ A;  1TWG A;  4LLG A;  3AQP A;  3GTO K;  5M3F K;  1XXB A;  4C3H K;  4XLP A;  1IL2 A;  1I3Q K;  4LQY A;  1JVI A;  1DCO A;  3NUH A;  3BUE A;  4A3K C;  4KM9 A;  1VGX A;  3GTM C;  3H0G C;  1Y1W C;  5HL8 A;  1B4A A;  4LOW A;  2PHC B;  4A3D C;  1I50 C;  4XLN A;  5TJ3 A;  2NVY K;  4PAB A;  1O27 A;  2B63 A;  1O24 A; 
#chains in the Genus database with same CATH homology
 1UV7 A;  2W7V A;  5HL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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