1J6W | Genus

Total Genus 41

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	161
structure length	161
Chain Sequence	LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLSLDN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Haemophilus influenzae
publication title	A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs. pubmed doi rcsb
molecule keywords	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
total genus	41
structure length	161
sequence length	161
chains with identical sequence	B
ec nomenclature	ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date	2001-05-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02664	LuxS	S-Ribosylhomocysteinase (LuxS)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1360.80	Alpha Beta	2-Layer Sandwich	Gyrase A; domain 2	S-ribosylhomocysteinase (LuxS)	1j6wA00

5E68A 2FQTA 1YCLA 1J98A 1JOEA 1JVIA 1VH2A 1J6VA 1J6XA 1INNA 1J6WA 2FQOA 1VJEA 1VGXA 1JQWA 4XCHA 1IE0A
chains in the Genus database with same CATH superfamily

2JA6K 2R92A 1YNNA 1ISEA 1RU0A 3GTJA 1YCLA 3GEIA 3GTMK 4AYBL 4GTAA 4Y52C 1K83K 4G7HA 5CHPA 4C45A 1PJ7A 4GTLA 1TWGA 4LR2A 1WSRA 3LPXA 2R7ZA 2VUMK 5CJ9A 3M4OC 1Y1VC 2NVXC 2PHCB 4KM8A 4LLGA 3OEPA 3QX3A 1TWHK 3FKIK 1I3QC 1XZQB 5M3MK 3AH5A 5TMCA 3L4JA 4KASA 4P5BA 1J98A 3HKZL 3S1RC 2R7ZC 4KMHA 2D6FC 4WILA 2A68A 4QJVB 3S2DC 1YX2A 1V5VA 5C44K 1GE9A 3GEEA 5C4XC 4GT9A 1KQ4A 2B63C 3S1MC 5D4DA 3RZOC 3FHZA 4A3KK 4BXXK 1ZQ1C 1EK8A 3PO2K 3AD7C 3T02A 2PPBA 3H3VL 1WIHA 3V4GA 1WQHA 3WODA 4FZBA 5IOSA 4M1XA 3A8JA 4A3IC 2YU9K 4LJZA 4QIWD 4C3HK 1I6HK 2CW0A 4KB2A 3HOUC 2E2HK 1EH1A 4OIOA 2E2IK 4A3EC 1BS2A 1XZPA 3S1NC 1F7VA 3GSIA 1IW7A 1VLOA 1J6WA 3AD9C 2GAGC 3I4MK 1ZYRA 4A3JC 4BY1C 1IS1A 1HI9A 4BBRC 3S17C 4A3BK 3K7AK 5FLMC 2JA6A 3GEHA 3MMLB 4KN4A 4AYBD 5M5XK 3SZYA 2P5MA 3GTMA 4KC6A 3IPJA 1K83A 4A93K 5C3EK 3S15K 3H0GC 2NVQC 1F93A 4XLPA 3BP8C 4QIWL 4BBSC 2VUMA 4P9SA 2FQTA 1IL2A 1DD5A 3GTOC 3CQZK 3G4AA 3S0XA 1WOOA 3TTGA 5FJ8K 5IYDC 5IP9K 5IP7C 2EBBA 5TMFA 1TWHA 1ZVUA 1TWFK 1J6XA 3FKIA 4Y7NC 1WCMK 3HKZD 4BLBA 1O24A 1USOA 5C4JC 3ADAC 4A3MC 3HOYK 3N0BA 3GTPK 3DXJA 1TWAK 1R9TC 1I50K 1F7UA 4RMFA 2JA5K 4KATA 1TWHC 2PMZL 2A6HA 3GTLK 4C2MC 2NVYC 1G51A 3GTQK 1IBAA 1SFOK 3S1QK 3HXAA 3I4NC 2NVTC 4XSZA 5M5YK 2V6UA 3M3YK 3H3VD 3T00A 3OPFA 4A3CK 1JVIA 5HL8A 2R92C 4GTBA 3S16C 3HOVC 3L4KA 2YU9A 4O2DA 3GTJC 4BY7C 3HOXC 1BGWA 4MEYA 1WOPA 2E2JK 3S14K 2E2HA 4OIRA 1TWGC 4A3KC 4C3IC 2E2IA 5IYBC 3HOZK 3BUEA 4X6AK 1O29A 4PABA 4OIQA 1O27A 3TFIA 2GSUA 1XXAA 2P8TA 2YU9C 4OINA 2JA7K 2GSNA 1L0WA 2Y3PA 2GAHC 1VJEA 1ZXOA 2E2HC 4G0VA 3PO3K 4Y52K 1XZPB 3NUHA 1WQGA 4GZYA 5IOTA 1ZBSA 4A3LC 5IYCC 1XXCA 3I4MC 4YFNA 3VA7A 1Y1VK 2NVXK 2R93K 1VH2A 4A3BC 2ZUFA 4Q5SA 3K7AC 4KB4A 1IE0A 1I3QK 1WORA 3CQZA 4A3FC 5L46A 1F9NA 3N0CA 1TWFA 1AB4A 1VRQC 4A93C 5C3EC 1WCMA 3S2DK 2WAQL 1B4BA 1O28A 3CAGA 4LK1A 1X31C 1B4AA 2V6SA 3GTKK 3HOWC 4GTDA 1DCOA 2B63K 3S1MK 3GTPA 1TWAA 2KWAA 2PMZD 3S2HC 1I50A 5IP9C 2JA5A 3AQOA 3GTLA 4KMUA 2O5JA 1HQMA 4XLNA 3GTQA 1SFOA 1JOEA 1WSVA 3GTGK 4KARA 3TFJA 1DCPA 3HOYC 2JA6C 1YNJA 3GTPC 1I50C 3LAPA 2JA5C 4G0UA 2O5IA 1EFWA 4A3EK 1DCHA 4A3GK 3GTMC 2PA8L 3GTQC 1K83C 3S1NK 3AD8C 1USMA 1SFOC 3S1QC 1UV7A 5EGHA 4P5AA 4YFXA 2RGRA 3M3YC 2VUMC 4BY1K 3FOEA 4BBRK 1INNA 4KDDA 3SZZA 2JA7A 3FKIC 2E2JC 2JA8K 4AH6A 3OREA 4OIPA 5E68A 4KMDA 1IQ0A 4C3JK 1Y1WK 3HOZC 3H0GK 5M3FK 4BBSK 1BJTA 4FM9A 3JSTA 3GTOK 1Y1VA 3A8IA 2JA7C 2R93A 2NVXA 5C44C 4KM9A 3RZDK 5IYDK 5IP7K 5IORA 1WQFA 3PO3C 3ERED 1TWCK 1I3QA 3BP3A 4BXXC 4ZH4A 3FOFA 2Y0SL 2FQOA 4Y7NK 4MEXA 5IOQA 3PO2C 1EI6A 2XCOA 5C4JK 3T01A 4A3DK 4A3MK 4LOWA 1JQWA 1O2FB 2WAQD 4GTFA 2R93C 4C3HC 1R9TK 1I6HC 2WB1L 5M5WK 5JFEA 3GDZA 4KMAA 4KN7A 4C2MK 2NVYK 3GTKA 4G7OA 2B63A 2E2IC 4GTCA 4XCHA 3I4NK 2NVTK 4GFQA 3Q3QA 4G7ZA 1SMYA 2R92K 3M4OK 3S16K 3GTGA 3HOVK 1VGXA 3GTJK 3GTKC 4BY7K 4J3NA 3HOXK 2GSOA 1XXBA 1TWGK 1XZQA 4C3IK 1I6VA 3S1RK 2R7ZK 2PA8D 1O2AA 1O25A 5IYBK 1O2BA 4BKWA 3S15C 3AQPA 5JVOA 2V6TA 3GTGC 2ZFZA 3G4CA 4QJVA 1XPPA 4DDQA 5C4XK 2W7VA 4WJ3M 1PJ6A 3CQZC 3RZOK 1O26A 4BLAA 4A3GC 4PAAA 2A69A 1TWFC 2A6EA 4A3LK 5IYCK 4ILDA 2BE5A 1WCMC 4WJ4A 4LK0A 1Y1WA 4A3IK 3H0GA 3N3YA 2CFAB 4GTEA 4KAWX 1PJ5A 3HOUK 1TWAC 4NOIA 3GTOA 1WOSA 2ZUEA 3GTLC 4A3FK 4G0WA 2JA8C 1EQRA 4Q4ZA 1TWCA 2Y0SD 4C3JC 1Y1WC 2XCRB 4A3JK 3TFHA 4MQ9A 3A8KA 1J6VA 3S17K 4A3CC 1BDFA 4YG2A 3EQLA 2JH3A 2XCQA 5FLMK 2CFAA 3HOWK 1C0AA 2WB1D 5TJ3A 1R9TA 3RZDC 3S2HK 3S14C 1TWCC 2NVYA 4JK1A 4XSXA 4LQYA 3GIRA 5EGEA 2RH6A 3LAJA 4X6AC 4YFKA 2NVQK 4A3DC
chains in the Genus database with same CATH topology

5E68A 2FQTA 1YCLA 1J98A 1JOEA 1JVIA 1VH2A 1J6VA 1J6XA 1INNA 1J6WA 2FQOA 1VJEA 1VGXA 1JQWA 4XCHA 1IE0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5E68 A;  2FQT A;  1YCL A;  1J98 A;  1JOE A;  1JVI A;  1VH2 A;  1J6V A;  1J6X A;  1INN A;  1J6W A;  2FQO A;  1VJE A;  1VGX A;  1JQW A;  4XCH A;  1IE0 A; 
#chains in the Genus database with same CATH topology
 2JA6 K;  2R92 A;  1YNN A;  1ISE A;  1RU0 A;  3GTJ A;  1YCL A;  3GEI A;  3GTM K;  4AYB L;  4GTA A;  4Y52 C;  1K83 K;  4G7H A;  5CHP A;  4C45 A;  1PJ7 A;  4GTL A;  1TWG A;  4LR2 A;  1WSR A;  3LPX A;  2R7Z A;  2VUM K;  5CJ9 A;  3M4O C;  1Y1V C;  2NVX C;  2PHC B;  4KM8 A;  4LLG A;  3OEP A;  3QX3 A;  1TWH K;  3FKI K;  1I3Q C;  1XZQ B;  5M3M K;  3AH5 A;  5TMC A;  3L4J A;  4KAS A;  4P5B A;  1J98 A;  3HKZ L;  3S1R C;  2R7Z C;  4KMH A;  2D6F C;  4WIL A;  2A68 A;  4QJV B;  3S2D C;  1YX2 A;  1V5V A;  5C44 K;  1GE9 A;  3GEE A;  5C4X C;  4GT9 A;  1KQ4 A;  2B63 C;  3S1M C;  5D4D A;  3RZO C;  3FHZ A;  4A3K K;  4BXX K;  1ZQ1 C;  1EK8 A;  3PO2 K;  3AD7 C;  3T02 A;  2PPB A;  3H3V L;  1WIH A;  3V4G A;  1WQH A;  3WOD A;  4FZB A;  5IOS A;  4M1X A;  3A8J A;  4A3I C;  2YU9 K;  4LJZ A;  4QIW D;  4C3H K;  1I6H K;  2CW0 A;  4KB2 A;  3HOU C;  2E2H K;  1EH1 A;  4OIO A;  2E2I K;  4A3E C;  1BS2 A;  1XZP A;  3S1N C;  1F7V A;  3GSI A;  1IW7 A;  1VLO A;  1J6W A;  3AD9 C;  2GAG C;  3I4M K;  1ZYR A;  4A3J C;  4BY1 C;  1IS1 A;  1HI9 A;  4BBR C;  3S17 C;  4A3B K;  3K7A K;  5FLM C;  2JA6 A;  3GEH A;  3MML B;  4KN4 A;  4AYB D;  5M5X K;  3SZY A;  2P5M A;  3GTM A;  4KC6 A;  3IPJ A;  1K83 A;  4A93 K;  5C3E K;  3S15 K;  3H0G C;  2NVQ C;  1F93 A;  4XLP A;  3BP8 C;  4QIW L;  4BBS C;  2VUM A;  4P9S A;  2FQT A;  1IL2 A;  1DD5 A;  3GTO C;  3CQZ K;  3G4A A;  3S0X A;  1WOO A;  3TTG A;  5FJ8 K;  5IYD C;  5IP9 K;  5IP7 C;  2EBB A;  5TMF A;  1TWH A;  1ZVU A;  1TWF K;  1J6X A;  3FKI A;  4Y7N C;  1WCM K;  3HKZ D;  4BLB A;  1O24 A;  1USO A;  5C4J C;  3ADA C;  4A3M C;  3HOY K;  3N0B A;  3GTP K;  3DXJ A;  1TWA K;  1R9T C;  1I50 K;  1F7U A;  4RMF A;  2JA5 K;  4KAT A;  1TWH C;  2PMZ L;  2A6H A;  3GTL K;  4C2M C;  2NVY C;  1G51 A;  3GTQ K;  1IBA A;  1SFO K;  3S1Q K;  3HXA A;  3I4N C;  2NVT C;  4XSZ A;  5M5Y K;  2V6U A;  3M3Y K;  3H3V D;  3T00 A;  3OPF A;  4A3C K;  1JVI A;  5HL8 A;  2R92 C;  4GTB A;  3S16 C;  3HOV C;  3L4K A;  2YU9 A;  4O2D A;  3GTJ C;  4BY7 C;  3HOX C;  1BGW A;  4MEY A;  1WOP A;  2E2J K;  3S14 K;  2E2H A;  4OIR A;  1TWG C;  4A3K C;  4C3I C;  2E2I A;  5IYB C;  3HOZ K;  3BUE A;  4X6A K;  1O29 A;  4PAB A;  4OIQ A;  1O27 A;  3TFI A;  2GSU A;  1XXA A;  2P8T A;  2YU9 C;  4OIN A;  2JA7 K;  2GSN A;  1L0W A;  2Y3P A;  2GAH C;  1VJE A;  1ZXO A;  2E2H C;  4G0V A;  3PO3 K;  4Y52 K;  1XZP B;  3NUH A;  1WQG A;  4GZY A;  5IOT A;  1ZBS A;  4A3L C;  5IYC C;  1XXC A;  3I4M C;  4YFN A;  3VA7 A;  1Y1V K;  2NVX K;  2R93 K;  1VH2 A;  4A3B C;  2ZUF A;  4Q5S A;  3K7A C;  4KB4 A;  1IE0 A;  1I3Q K;  1WOR A;  3CQZ A;  4A3F C;  5L46 A;  1F9N A;  3N0C A;  1TWF A;  1AB4 A;  1VRQ C;  4A93 C;  5C3E C;  1WCM A;  3S2D K;  2WAQ L;  1B4B A;  1O28 A;  3CAG A;  4LK1 A;  1X31 C;  1B4A A;  2V6S A;  3GTK K;  3HOW C;  4GTD A;  1DCO A;  2B63 K;  3S1M K;  3GTP A;  1TWA A;  2KWA A;  2PMZ D;  3S2H C;  1I50 A;  5IP9 C;  2JA5 A;  3AQO A;  3GTL A;  4KMU A;  2O5J A;  1HQM A;  4XLN A;  3GTQ A;  1SFO A;  1JOE A;  1WSV A;  3GTG K;  4KAR A;  3TFJ A;  1DCP A;  3HOY C;  2JA6 C;  1YNJ A;  3GTP C;  1I50 C;  3LAP A;  2JA5 C;  4G0U A;  2O5I A;  1EFW A;  4A3E K;  1DCH A;  4A3G K;  3GTM C;  2PA8 L;  3GTQ C;  1K83 C;  3S1N K;  3AD8 C;  1USM A;  1SFO C;  3S1Q C;  1UV7 A;  5EGH A;  4P5A A;  4YFX A;  2RGR A;  3M3Y C;  2VUM C;  4BY1 K;  3FOE A;  4BBR K;  1INN A;  4KDD A;  3SZZ A;  2JA7 A;  3FKI C;  2E2J C;  2JA8 K;  4AH6 A;  3ORE A;  4OIP A;  5E68 A;  4KMD A;  1IQ0 A;  4C3J K;  1Y1W K;  3HOZ C;  3H0G K;  5M3F K;  4BBS K;  1BJT A;  4FM9 A;  3JST A;  3GTO K;  1Y1V A;  3A8I A;  2JA7 C;  2R93 A;  2NVX A;  5C44 C;  4KM9 A;  3RZD K;  5IYD K;  5IP7 K;  5IOR A;  1WQF A;  3PO3 C;  3ERE D;  1TWC K;  1I3Q A;  3BP3 A;  4BXX C;  4ZH4 A;  3FOF A;  2Y0S L;  2FQO A;  4Y7N K;  4MEX A;  5IOQ A;  3PO2 C;  1EI6 A;  2XCO A;  5C4J K;  3T01 A;  4A3D K;  4A3M K;  4LOW A;  1JQW A;  1O2F B;  2WAQ D;  4GTF A;  2R93 C;  4C3H C;  1R9T K;  1I6H C;  2WB1 L;  5M5W K;  5JFE A;  3GDZ A;  4KMA A;  4KN7 A;  4C2M K;  2NVY K;  3GTK A;  4G7O A;  2B63 A;  2E2I C;  4GTC A;  4XCH A;  3I4N K;  2NVT K;  4GFQ A;  3Q3Q A;  4G7Z A;  1SMY A;  2R92 K;  3M4O K;  3S16 K;  3GTG A;  3HOV K;  1VGX A;  3GTJ K;  3GTK C;  4BY7 K;  4J3N A;  3HOX K;  2GSO A;  1XXB A;  1TWG K;  1XZQ A;  4C3I K;  1I6V A;  3S1R K;  2R7Z K;  2PA8 D;  1O2A A;  1O25 A;  5IYB K;  1O2B A;  4BKW A;  3S15 C;  3AQP A;  5JVO A;  2V6T A;  3GTG C;  2ZFZ A;  3G4C A;  4QJV A;  1XPP A;  4DDQ A;  5C4X K;  2W7V A;  4WJ3 M;  1PJ6 A;  3CQZ C;  3RZO K;  1O26 A;  4BLA A;  4A3G C;  4PAA A;  2A69 A;  1TWF C;  2A6E A;  4A3L K;  5IYC K;  4ILD A;  2BE5 A;  1WCM C;  4WJ4 A;  4LK0 A;  1Y1W A;  4A3I K;  3H0G A;  3N3Y A;  2CFA B;  4GTE A;  4KAW X;  1PJ5 A;  3HOU K;  1TWA C;  4NOI A;  3GTO A;  1WOS A;  2ZUE A;  3GTL C;  4A3F K;  4G0W A;  2JA8 C;  1EQR A;  4Q4Z A;  1TWC A;  2Y0S D;  4C3J C;  1Y1W C;  2XCR B;  4A3J K;  3TFH A;  4MQ9 A;  3A8K A;  1J6V A;  3S17 K;  4A3C C;  1BDF A;  4YG2 A;  3EQL A;  2JH3 A;  2XCQ A;  5FLM K;  2CFA A;  3HOW K;  1C0A A;  2WB1 D;  5TJ3 A;  1R9T A;  3RZD C;  3S2H K;  3S14 C;  1TWC C;  2NVY A;  4JK1 A;  4XSX A;  4LQY A;  3GIR A;  5EGE A;  2RH6 A;  3LAJ A;  4X6A C;  4YFK A;  2NVQ K;  4A3D C; 
#chains in the Genus database with same CATH homology
 5E68 A;  2FQT A;  1YCL A;  1J98 A;  1JOE A;  1JVI A;  1VH2 A;  1J6V A;  1J6X A;  1INN A;  1J6W A;  2FQO A;  1VJE A;  1VGX A;  1JQW A;  4XCH A;  1IE0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1J6WA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations