1USMA

Dcoh, a bifunctional protein-binding transcriptional coactivator, pro9leu mutant
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
80
structure length
77
Chain Sequence
MDWEERKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGVTEKDREMARLTDALLQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-5)TIV1 (5-11)AH2 (65-78)S2 (12-17)TII1 (47-50)EMPTYAH1 (21-38)S3 (43-47)S4 (50-55)3H1 (58-60)Updating...
connected with : NaN
molecule tags Transcriptional stimulator
source organism Thermus thermophilus
publication title Crystal Structure of Transcriptional Coactivator DCoH from Thermus Thermophilus
rcsb
molecule keywords HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
total genus 23
structure length 77
sequence length 80
ec nomenclature
pdb deposition date 2003-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01329 Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.20 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Transcriptional coactivator/pterin dehydratase 1usmA00
4LOWA 1RU0A 1DCHA 3HXAA 1DCPA 2V6TA 1DCOA 1USOA 2V6UA 2V6SA 2EBBA 4C45A 3JSTA 1F93A 4WILA 1USMA
chains in the Genus database with same CATH superfamily
4OINA 5JVOA 3QX3A 3BUEA 5C44K 3H0GA 4A3MK 1WCMC 5CJ9A 4XCHA 1BJTA 3FKIC 4MEXA 1PJ6A 1TWFC 3AQPA 4KM9A 1XXAA 4C2MC 1DCPA 4YFKA 1IBAA 5IYDC 2EBBA 4KMUA 1I3QC 1UV7A 3M3YK 1XZQB 5M3MK 3HOZK 2ZUFA 4QJVA 3L4KA 4Y7NC 1USMA 2JA7C 1XZPB 4Q5SA 2JA6C 3HKZD 3L4JA 5IP9K 2JA5A 4LOWA 2NVXC 4GTDA 4BBRK 3RZOC 3GDZA 4A3LK 2WB1D 3H0GK 4BXXC 4AYBD 1XXBA 3DXJA 4AH6A 4BY1C 3NUHA 2A6EA 2R93A 1IQ0A 3MMLB 1VH2A 1WOSA 5C4JC 4C3IC 1O25A 3AD8C 2O5IA 4QIWD 1J98A 2Y0SD 2PHCB 3S1MK 1Y1VC 2JA5K 2NVYA 3T01A 3S1RK 1SMYA 5IOQA 1O2FB 1WQHA 3S17K 1JOEA 2A68A 3PO2C 4C3JC 2GSUA 1PJ7A 2YU9C 3GTMC 1C0AA 3LAJA 3S2HC 4A3GK 3AH5A 3HOVC 2R7ZA 2R93K 5IORA 1I50C 3AD7C 3GTPA 3GTGC 3WODA 1WCMA 4Y52K 3GIRA 3FKIA 1DCHA 2NVYK 1EFWA 1TWFA 2XCOA 1AB4A 4A93K 4G7OA 1I3QA 4A3IK 2FQTA 1TWCC 1F7UA 1V5VA 1L0WA 1F9NA 1I6HC 1RU0A 2JA8K 2CW0A 3BP8C 1ZXOA 2JA6A 2R7ZK 4A3BK 3A8IA 3GTJC 3VA7A 1XXCA 1EH1A 5FJ8K 4XSXA 2NVXA 3GTPK 4QIWL 4ZH4A 2Y0SL 2BE5A 4GFQA 3S15K 1EK8A 1ZVUA 2E2IC 4G7ZA 2O5JA 1WCMK 5IP7C 2CFAA 3FKIK 1VJEA 1K83C 1TWFK 4C2MK 5EGHA 5IYDK 4PABA 1I3QK 2P5MA 4KASA 3T00A 5IYCC 3GEIA 2RGRA 2B63C 1TWGK 4Y7NK 2JA7K 1VRQC 4MQ9A 2JA6K 2V6TA 3H3VL 1Y1VA 2E2JC 1G51A 2NVXK 1GE9A 2NVTC 3RZOK 1YCLA 5TJ3A 4BY7C 3TTGA 3ADAC 4BXXK 4A3EC 2YU9A 3GTMA 4KC6A 4C45A 4BY1K 4A3JC 4G0VA 4DDQA 3S1QC 3BP3A 1I50A 3N3YA 4XSZA 3HOUC 5C4JK 4C3IK 3ERED 3GTGA 2Y3PA 4GTAA 2PMZD 1Y1VK 2V6SA 3OPFA 3FOFA 3HOXC 4YFNA 3TFIA 4KN7A 3N0CA 4KMAA 2P8TA 4ILDA 3GTOC 1TWCA 2ZFZA 3PO2K 4C3JK 2VUMC 5TMFA 4KMHA 1TWHC 2YU9K 3GTMK 3S2HK 1YNNA 3HOVK 3GSIA 1Y1WC 3GTQC 1XZQA 4BBSC 1YNJA 3S16C 4KB2A 4NOIA 3M4OC 3GTJA 2W7VA 1PJ5A 1I50K 3PO3C 5C3EC 5C4XK 3RZDC 3V4GA 1XZPA 3GTGK 2E2IA 2A69A 1VLOA 5IOTA 4C3HC 5L46A 1X31C 3GTKC 1O24A 5IP9C 1SFOC 1K83A 4X6AC 5M5XK 4OIOA 5EGEA 4FZBA 4OIRA 3AD9C 3LAPA 1TWCK 3HOYC 1I6HK 1EQRA 4MEYA 5M5YK 1VGXA 3I4MC 2B63A 2NVQC 3HKZL 3CQZC 3GTJK 2R92C 4J3NA 3LPXA 3TFHA 5FLMC 4G0UA 4KMDA 1ISEA 1F7VA 2E2IK 2WB1L 3FOEA 2PMZL 4AYBL 3FHZA 5IP7K 4KAWX 2GAHC 4KN4A 1K83K 1KQ4A 3S14C 2V6UA 5IYBC 3HOWC 4YG2A 4LJZA 1INNA 3K7AC 4KM8A 5HL8A 1R9TC 5IYCK 2B63K 5D4DA 4WJ3M 1JVIA 3G4AA 3I4NC 5M5WK 3IPJA 2E2JK 1XPPA 2NVTK 1F93A 1ZYRA 3GTOA 4LK0A 4BY7K 2VUMA 1HI9A 4A3EK 1TWHA 4A3DC 3OREA 3AQOA 4A3JK 4KATA 1Y1WA 3GTQA 3S1QK 1WOPA 3S1NC 4KDDA 1TWAC 4QJVB 3JSTA 4WILA 2E2HC 4G7HA 1O28A 3HOUK 1IW7A 4GTCA 1BGWA 4PAAA 4A3KC 2JA8C 3SZZA 3GTKA 4XLNA 3GTLC 4KARA 1SFOA 3HOXK 1IE0A 3Q3QA 4GT9A 1IS1A 1USOA 4BKWA 3S2DC 3GTOK 2VUMK 1O2BA 4RMFA 1BDFA 1TWHK 1DCOA 1HQMA 4P5BA 1Y1WK 3GTQK 4P5AA 3S16K 3CQZA 4LQYA 3M4OK 4BBSK 3CAGA 2R92A 1BS2A 2RH6A 2ZUEA 5C3EK 3RZDK 3PO3K 1WORA 2PA8D 4A3CC 4A3FC 5E68A 3GEHA 1TWGC 4G0WA 4WJ4A 4C3HK 2GSNA 3GTKK 5C44C 3TFJA 4A3MC 4M1XA 1SFOK 4X6AK 1YX2A 1B4BA 2WAQD 3HOYK 1O2AA 1R9TA 3I4MK 3M3YC 2NVQK 1I6VA 1ZQ1C 3HOZC 3G4CA 3CQZK 5M3FK 3EQLA 4YFXA 1ZBSA 2R92K 1WQFA 2FQOA 5FLMK 1O26A 1WSVA 4BLBA 1J6XA 4BBRC 5TMCA 4O2DA 2KWAA 4A3LC 1EI6A 1O27A 3H0GC 4Q4ZA 3S14K 4OIQA 5IYBK 3HOWK 1TWAA 4OIPA 3K7AK 2E2HA 4XLPA 1WOOA 1R9TK 4LK1A 3OEPA 4LLGA 1WQGA 3T02A 5IOSA 3I4NK 1DD5A 4GTFA 2GSOA 1J6VA 2PA8L 3GTLA 3S1MC 4P9SA 5C4XC 2JA5C 3H3VD 2XCRB 2CFAB 3S1RC 1O29A 4GTBA 4A3DK 3S17C 4LR2A 1JQWA 3N0BA 3A8KA 2JH3A 4GZYA 2WAQL 3S1NK 4A3GC 1TWAK 2E2HK 2R93C 4A3KK 4KB4A 1TWGA 2XCQA 2PPBA 2JA7A 3GTLK 1J6WA 4Y52C 4BLAA 2NVYC 3S2DK 4A93C 1WSRA 2GAGC 4A3IC 3HXAA 4FM9A 3S0XA 4JK1A 3GEEA 5CHPA 3SZYA 2D6FC 4GTLA 1WIHA 4GTEA 2R7ZC 3A8JA 5JFEA 4A3BC 4A3CK 4A3FK 2A6HA 1B4AA 3GTPC 3S15C 1IL2A
chains in the Genus database with same CATH topology
4LOWA 1RU0A 1DCHA 3HXAA 1DCPA 2V6TA 1DCOA 1USOA 2V6UA 2V6SA 2EBBA 4C45A 3JSTA 1F93A 4WILA 1USMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LOW A;  1RU0 A;  1DCH A;  3HXA A;  1DCP A;  2V6T A;  1DCO A;  1USO A;  2V6U A;  2V6S A;  2EBB A;  4C45 A;  3JST A;  1F93 A;  4WIL A;  1USM A; 
#chains in the Genus database with same CATH topology
 4OIN A;  5JVO A;  3QX3 A;  3BUE A;  5C44 K;  3H0G A;  4A3M K;  1WCM C;  5CJ9 A;  4XCH A;  1BJT A;  3FKI C;  4MEX A;  1PJ6 A;  1TWF C;  3AQP A;  4KM9 A;  1XXA A;  4C2M C;  1DCP A;  4YFK A;  1IBA A;  5IYD C;  2EBB A;  4KMU A;  1I3Q C;  1UV7 A;  3M3Y K;  1XZQ B;  5M3M K;  3HOZ K;  2ZUF A;  4QJV A;  3L4K A;  4Y7N C;  1USM A;  2JA7 C;  1XZP B;  4Q5S A;  2JA6 C;  3HKZ D;  3L4J A;  5IP9 K;  2JA5 A;  4LOW A;  2NVX C;  4GTD A;  4BBR K;  3RZO C;  3GDZ A;  4A3L K;  2WB1 D;  3H0G K;  4BXX C;  4AYB D;  1XXB A;  3DXJ A;  4AH6 A;  4BY1 C;  3NUH A;  2A6E A;  2R93 A;  1IQ0 A;  3MML B;  1VH2 A;  1WOS A;  5C4J C;  4C3I C;  1O25 A;  3AD8 C;  2O5I A;  4QIW D;  1J98 A;  2Y0S D;  2PHC B;  3S1M K;  1Y1V C;  2JA5 K;  2NVY A;  3T01 A;  3S1R K;  1SMY A;  5IOQ A;  1O2F B;  1WQH A;  3S17 K;  1JOE A;  2A68 A;  3PO2 C;  4C3J C;  2GSU A;  1PJ7 A;  2YU9 C;  3GTM C;  1C0A A;  3LAJ A;  3S2H C;  4A3G K;  3AH5 A;  3HOV C;  2R7Z A;  2R93 K;  5IOR A;  1I50 C;  3AD7 C;  3GTP A;  3GTG C;  3WOD A;  1WCM A;  4Y52 K;  3GIR A;  3FKI A;  1DCH A;  2NVY K;  1EFW A;  1TWF A;  2XCO A;  1AB4 A;  4A93 K;  4G7O A;  1I3Q A;  4A3I K;  2FQT A;  1TWC C;  1F7U A;  1V5V A;  1L0W A;  1F9N A;  1I6H C;  1RU0 A;  2JA8 K;  2CW0 A;  3BP8 C;  1ZXO A;  2JA6 A;  2R7Z K;  4A3B K;  3A8I A;  3GTJ C;  3VA7 A;  1XXC A;  1EH1 A;  5FJ8 K;  4XSX A;  2NVX A;  3GTP K;  4QIW L;  4ZH4 A;  2Y0S L;  2BE5 A;  4GFQ A;  3S15 K;  1EK8 A;  1ZVU A;  2E2I C;  4G7Z A;  2O5J A;  1WCM K;  5IP7 C;  2CFA A;  3FKI K;  1VJE A;  1K83 C;  1TWF K;  4C2M K;  5EGH A;  5IYD K;  4PAB A;  1I3Q K;  2P5M A;  4KAS A;  3T00 A;  5IYC C;  3GEI A;  2RGR A;  2B63 C;  1TWG K;  4Y7N K;  2JA7 K;  1VRQ C;  4MQ9 A;  2JA6 K;  2V6T A;  3H3V L;  1Y1V A;  2E2J C;  1G51 A;  2NVX K;  1GE9 A;  2NVT C;  3RZO K;  1YCL A;  5TJ3 A;  4BY7 C;  3TTG A;  3ADA C;  4BXX K;  4A3E C;  2YU9 A;  3GTM A;  4KC6 A;  4C45 A;  4BY1 K;  4A3J C;  4G0V A;  4DDQ A;  3S1Q C;  3BP3 A;  1I50 A;  3N3Y A;  4XSZ A;  3HOU C;  5C4J K;  4C3I K;  3ERE D;  3GTG A;  2Y3P A;  4GTA A;  2PMZ D;  1Y1V K;  2V6S A;  3OPF A;  3FOF A;  3HOX C;  4YFN A;  3TFI A;  4KN7 A;  3N0C A;  4KMA A;  2P8T A;  4ILD A;  3GTO C;  1TWC A;  2ZFZ A;  3PO2 K;  4C3J K;  2VUM C;  5TMF A;  4KMH A;  1TWH C;  2YU9 K;  3GTM K;  3S2H K;  1YNN A;  3HOV K;  3GSI A;  1Y1W C;  3GTQ C;  1XZQ A;  4BBS C;  1YNJ A;  3S16 C;  4KB2 A;  4NOI A;  3M4O C;  3GTJ A;  2W7V A;  1PJ5 A;  1I50 K;  3PO3 C;  5C3E C;  5C4X K;  3RZD C;  3V4G A;  1XZP A;  3GTG K;  2E2I A;  2A69 A;  1VLO A;  5IOT A;  4C3H C;  5L46 A;  1X31 C;  3GTK C;  1O24 A;  5IP9 C;  1SFO C;  1K83 A;  4X6A C;  5M5X K;  4OIO A;  5EGE A;  4FZB A;  4OIR A;  3AD9 C;  3LAP A;  1TWC K;  3HOY C;  1I6H K;  1EQR A;  4MEY A;  5M5Y K;  1VGX A;  3I4M C;  2B63 A;  2NVQ C;  3HKZ L;  3CQZ C;  3GTJ K;  2R92 C;  4J3N A;  3LPX A;  3TFH A;  5FLM C;  4G0U A;  4KMD A;  1ISE A;  1F7V A;  2E2I K;  2WB1 L;  3FOE A;  2PMZ L;  4AYB L;  3FHZ A;  5IP7 K;  4KAW X;  2GAH C;  4KN4 A;  1K83 K;  1KQ4 A;  3S14 C;  2V6U A;  5IYB C;  3HOW C;  4YG2 A;  4LJZ A;  1INN A;  3K7A C;  4KM8 A;  5HL8 A;  1R9T C;  5IYC K;  2B63 K;  5D4D A;  4WJ3 M;  1JVI A;  3G4A A;  3I4N C;  5M5W K;  3IPJ A;  2E2J K;  1XPP A;  2NVT K;  1F93 A;  1ZYR A;  3GTO A;  4LK0 A;  4BY7 K;  2VUM A;  1HI9 A;  4A3E K;  1TWH A;  4A3D C;  3ORE A;  3AQO A;  4A3J K;  4KAT A;  1Y1W A;  3GTQ A;  3S1Q K;  1WOP A;  3S1N C;  4KDD A;  1TWA C;  4QJV B;  3JST A;  4WIL A;  2E2H C;  4G7H A;  1O28 A;  3HOU K;  1IW7 A;  4GTC A;  1BGW A;  4PAA A;  4A3K C;  2JA8 C;  3SZZ A;  3GTK A;  4XLN A;  3GTL C;  4KAR A;  1SFO A;  3HOX K;  1IE0 A;  3Q3Q A;  4GT9 A;  1IS1 A;  1USO A;  4BKW A;  3S2D C;  3GTO K;  2VUM K;  1O2B A;  4RMF A;  1BDF A;  1TWH K;  1DCO A;  1HQM A;  4P5B A;  1Y1W K;  3GTQ K;  4P5A A;  3S16 K;  3CQZ A;  4LQY A;  3M4O K;  4BBS K;  3CAG A;  2R92 A;  1BS2 A;  2RH6 A;  2ZUE A;  5C3E K;  3RZD K;  3PO3 K;  1WOR A;  2PA8 D;  4A3C C;  4A3F C;  5E68 A;  3GEH A;  1TWG C;  4G0W A;  4WJ4 A;  4C3H K;  2GSN A;  3GTK K;  5C44 C;  3TFJ A;  4A3M C;  4M1X A;  1SFO K;  4X6A K;  1YX2 A;  1B4B A;  2WAQ D;  3HOY K;  1O2A A;  1R9T A;  3I4M K;  3M3Y C;  2NVQ K;  1I6V A;  1ZQ1 C;  3HOZ C;  3G4C A;  3CQZ K;  5M3F K;  3EQL A;  4YFX A;  1ZBS A;  2R92 K;  1WQF A;  2FQO A;  5FLM K;  1O26 A;  1WSV A;  4BLB A;  1J6X A;  4BBR C;  5TMC A;  4O2D A;  2KWA A;  4A3L C;  1EI6 A;  1O27 A;  3H0G C;  4Q4Z A;  3S14 K;  4OIQ A;  5IYB K;  3HOW K;  1TWA A;  4OIP A;  3K7A K;  2E2H A;  4XLP A;  1WOO A;  1R9T K;  4LK1 A;  3OEP A;  4LLG A;  1WQG A;  3T02 A;  5IOS A;  3I4N K;  1DD5 A;  4GTF A;  2GSO A;  1J6V A;  2PA8 L;  3GTL A;  3S1M C;  4P9S A;  5C4X C;  2JA5 C;  3H3V D;  2XCR B;  2CFA B;  3S1R C;  1O29 A;  4GTB A;  4A3D K;  3S17 C;  4LR2 A;  1JQW A;  3N0B A;  3A8K A;  2JH3 A;  4GZY A;  2WAQ L;  3S1N K;  4A3G C;  1TWA K;  2E2H K;  2R93 C;  4A3K K;  4KB4 A;  1TWG A;  2XCQ A;  2PPB A;  2JA7 A;  3GTL K;  1J6W A;  4Y52 C;  4BLA A;  2NVY C;  3S2D K;  4A93 C;  1WSR A;  2GAG C;  4A3I C;  3HXA A;  4FM9 A;  3S0X A;  4JK1 A;  3GEE A;  5CHP A;  3SZY A;  2D6F C;  4GTL A;  1WIH A;  4GTE A;  2R7Z C;  3A8J A;  5JFE A;  4A3B C;  4A3C K;  4A3F K;  2A6H A;  1B4A A;  3GTP C;  3S15 C;  1IL2 A; 
#chains in the Genus database with same CATH homology
 4LOW A;  1RU0 A;  1DCH A;  3HXA A;  1DCP A;  2V6T A;  1DCO A;  1USO A;  2V6U A;  2V6S A;  2EBB A;  4C45 A;  3JST A;  1F93 A;  4WIL A;  1USM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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