1UV7A

Periplasmic domain of epsm from vibrio cholerae
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
80
structure length
76
Chain Sequence
QPLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRGVVEVKRLQLKRGG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport
source organism Vibrio cholerae
publication title The Crystal Structure of the Periplasmic Domain of the Type II Secretion System Protein Epsm from Vibrio Cholerae: The Simplest Version of the Ferredoxin Fold
pubmed doi rcsb
molecule keywords GENERAL SECRETION PATHWAY PROTEIN M
total genus 18
structure length 76
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 1uv7A00
1UV7A 2W7VA 5HL8A
chains in the Genus database with same CATH superfamily
3EQLA 3HOZC 1WCMK 3GTOA 3S1QC 4XLNA 1ZXOA 1F7VA 1L0WA 1B4AA 1TWGA 4AYBD 4G7ZA 4XSZA 3S1MC 3S2HK 4DDQA 3HKZD 4YG2A 4OIQA 3GTMC 3MMLB 3M3YK 3GTQA 5IORA 1G51A 4A3IC 2JA7K 3I4MC 1VH2A 3RZDC 4WILA 3L4JA 1YCLA 4BXXC 4KMHA 1Y1WC 4OIRA 4FM9A 5IP9C 5TMFA 1WQHA 3WODA 1WOOA 3T01A 4FZBA 3GTJK 1I50A 4A3MC 1O24A 4GTEA 4BLBA 1F7UA 4A3LK 3S1RC 3S1NK 2WB1L 5IP7K 2A69A 1SFOC 2A6HA 2ZFZA 1BJTA 5FLMK 2JA5A 2Y0SL 5IYDC 3GTLC 3HOZK 3S1QK 3BP3A 4KAWX 1WCMA 4G0WA 3S1MK 1TWAC 1IL2A 5TJ3A 4Y7NC 5C3EC 4BY1C 3GTMK 5CJ9A 1O26A 3L4KA 1VGXA 2PA8D 3FOEA 4A3BC 1SMYA 4A3IK 4KMDA 3AH5A 3I4MK 4WJ3M 4M1XA 3DXJA 3GEIA 3RZDK 3HKZL 4JK1A 4ZH4A 4BXXK 4P5AA 1Y1WK 1DCHA 5IP9K 2XCRB 3Q3QA 1XZPB 1IE0A 4KMUA 2FQOA 3CAGA 3PO3C 4A3MK 3GTJA 2GSNA 4Q5SA 1O2AA 1I3QC 1WOSA 5IOSA 1O2FB 1ZYRA 4A93C 3S1RK 5M5YK 1SFOK 1EQRA 2JH3A 2NVXC 2GAGC 4KMAA 3FKIC 5IYDK 4Y52C 3GTQK 1USMA 3HXAA 1F93A 5E68A 3GTLK 3TFJA 2ZUEA 2RH6A 2R7ZC 1J6VA 2E2HC 1TWAK 2V6UA 5M3MK 2KWAA 4LK1A 4Y7NK 2GAHC 5C3EK 4BY1K 4LQYA 3GTMA 2A68A 5M3FK 4KB4A 4A3BK 4KARA 3OREA 4YFXA 4GT9A 1TWCA 4A3CC 3AD8C 2Y3PA 4MEXA 3VA7A 1Y1WA 1JQWA 4KDDA 3PO3K 2BE5A 1I6VA 3GTPC 1I3QK 2E2IC 4A93K 4PABA 1SFOA 2NVXK 2R92C 3FKIK 1X31C 5C4JC 4Y52K 5JVOA 3S2DC 2W7VA 3GTLA 1V5VA 3AQOA 1TWCC 3G4AA 3AQPA 1R9TC 2R7ZK 2E2HK 4X6AC 1TWAA 3S14C 1ISEA 5L46A 3GTGC 1WORA 4BBSC 1YX2A 4XSXA 3AD7C 4A3CK 4QJVB 3SZZA 4KASA 4MEYA 3GIRA 5HL8A 3TFIA 4C45A 4KN7A 1IS1A 3G4CA 4XLPA 3GEEA 3GDZA 1XXAA 3GSIA 3S15C 4C3HC 4LJZA 3M4OC 1EK8A 1GE9A 1ZBSA 2CFAB 3GTPK 2E2IK 4A3GC 1DCPA 1I3QA 1HQMA 2NVYA 5M5XK 3HOYC 2RGRA 1XXBA 5IOTA 2R92K 2NVXA 5C4JK 3FKIA 4J3NA 3JSTA 3S2DK 2PHCB 5CHPA 4LR2A 4NOIA 1TWCK 1R9TK 3BUEA 2R7ZA 4X6AK 1XZQB 3S14K 1WSVA 2E2HA 2P8TA 1IQ0A 3GTGK 4GFQA 5C4XC 4BBSK 4A3FC 2O5JA 4KC6A 3FOFA 3PO2C 1EI6A 2WAQL 4PAAA 1B4BA 2NVYC 1VLOA 3A8IA 2B63A 1DD5A 4G0UA 2PMZL 1BGWA 1O25A 3S15K 4GTBA 4C3HK 2YU9C 3LAPA 2XCOA 3M4OK 1O2BA 4RMFA 2FQTA 4BKWA 3V4GA 3ADAC 1EFWA 4A3GK 3GTPA 2E2IA 4KM9A 4YFNA 3OPFA 3HOYK 3TTGA 3S0XA 4QJVA 2R92A 1PJ5A 4A3JC 4KB2A 3T02A 2CW0A 5C44C 1Y1VC 1R9TA 4A3DC 3S17C 1K83A 4OIOA 3H3VD 1C0AA 1TWFC 4GZYA 5C4XK 2B63C 2CFAA 3GTGA 4A3FK 2R93C 3QX3A 2GSUA 3GTKC 1IBAA 3PO2K 1O27A 3AD9C 2ZUFA 4A3EC 1WQFA 3NUHA 4OIPA 4C3IC 2NVYK 3BP8C 4P5BA 1KQ4A 3CQZA 3TFHA 2YU9K 1I6HC 2E2JC 3HOWC 4GTDA 2D6FC 2JA8C 4KATA 3K7AC 1XZPA 3N0CA 1K83C 3A8JA 1JVIA 4QIWD 4LLGA 1RU0A 5M5WK 3H0GC 2WAQD 1J98A 4AH6A 1JOEA 2VUMC 4LOWA 4A3JK 4A3KC 1AB4A 5C44K 2PMZD 1Y1VK 4A3DK 3S17K 5TMCA 4OINA 4GTAA 1TWFK 2B63K 4WJ4A 3HOUC 2R93K 1TWHA 3CQZC 2JA6C 1XPPA 4KM8A 1PJ7A 3A8KA 3H3VL 2NVTC 4BBRC 3GTKK 5EGHA 4MQ9A 4A3EK 1WSRA 4C3IK 1INNA 3GTOC 5IOQA 1TWGC 1I6HK 2E2JK 2YU9A 3HOWK 4YFKA 4C3JC 2JA8K 4ILDA 1VRQC 3K7AK 1K83K 4BLAA 3GTQC 4Q4ZA 3I4NC 1BDFA 2O5IA 1ZVUA 3S16C 5D4DA 1F9NA 3H0GK 4BY7C 1TWHC 2VUMK 3N3YA 4GTFA 4A3KK 4QIWL 5IYCC 3FHZA 1Y1VA 3LPXA 5JFEA 1XXCA 4GTCA 1J6WA 4AYBL 1TWFA 1I50C 4C2MC 1WOPA 3HOVC 5IYBC 3HOUK 2A6EA 3LAJA 3CQZK 2JA6K 2JA7A 2R93A 3RZOC 3GEHA 4GTLA 4BBRK 2NVTK 3GTKA 2NVQC 3N0BA 1BS2A 1DCOA 2JA5C 3OEPA 3HOXC 2P5MA 3GTOK 2V6SA 1WCMC 1UV7A 1ZQ1C 4KN4A 2V6TA 4G0VA 1TWGK 3ERED 5EGEA 1O29A 4C3JK 5FJ8K 3S2HC 1HI9A 2XCQA 2GSOA 1VJEA 3I4NK 3M3YC 3S16K 4BY7K 4LK0A 3IPJA 1TWHK 3H0GA 2JA7C 1J6XA 2VUMA 4P9SA 4G7OA 5IYCK 1O28A 1WIHA 3SZYA 1EH1A 1YNNA 1I50K 2EBBA 3T00A 4C2MK 5IYBK 2WB1D 3HOVK 3GTJC 2PPBA 1USOA 4XCHA 2Y0SD 2JA6A 1IW7A 1YNJA 3RZOK 4A3LC 2PA8L 1XZQA 3S1NC 2NVQK 1WQGA 5IP7C 4G7HA 4O2DA 2JA5K 5FLMC 3HOXK 1PJ6A
chains in the Genus database with same CATH topology
1UV7A 2W7VA 5HL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UV7 A;  2W7V A;  5HL8 A; 
#chains in the Genus database with same CATH topology
 3EQL A;  3HOZ C;  1WCM K;  3GTO A;  3S1Q C;  4XLN A;  1ZXO A;  1F7V A;  1L0W A;  1B4A A;  1TWG A;  4AYB D;  4G7Z A;  4XSZ A;  3S1M C;  3S2H K;  4DDQ A;  3HKZ D;  4YG2 A;  4OIQ A;  3GTM C;  3MML B;  3M3Y K;  3GTQ A;  5IOR A;  1G51 A;  4A3I C;  2JA7 K;  3I4M C;  1VH2 A;  3RZD C;  4WIL A;  3L4J A;  1YCL A;  4BXX C;  4KMH A;  1Y1W C;  4OIR A;  4FM9 A;  5IP9 C;  5TMF A;  1WQH A;  3WOD A;  1WOO A;  3T01 A;  4FZB A;  3GTJ K;  1I50 A;  4A3M C;  1O24 A;  4GTE A;  4BLB A;  1F7U A;  4A3L K;  3S1R C;  3S1N K;  2WB1 L;  5IP7 K;  2A69 A;  1SFO C;  2A6H A;  2ZFZ A;  1BJT A;  5FLM K;  2JA5 A;  2Y0S L;  5IYD C;  3GTL C;  3HOZ K;  3S1Q K;  3BP3 A;  4KAW X;  1WCM A;  4G0W A;  3S1M K;  1TWA C;  1IL2 A;  5TJ3 A;  4Y7N C;  5C3E C;  4BY1 C;  3GTM K;  5CJ9 A;  1O26 A;  3L4K A;  1VGX A;  2PA8 D;  3FOE A;  4A3B C;  1SMY A;  4A3I K;  4KMD A;  3AH5 A;  3I4M K;  4WJ3 M;  4M1X A;  3DXJ A;  3GEI A;  3RZD K;  3HKZ L;  4JK1 A;  4ZH4 A;  4BXX K;  4P5A A;  1Y1W K;  1DCH A;  5IP9 K;  2XCR B;  3Q3Q A;  1XZP B;  1IE0 A;  4KMU A;  2FQO A;  3CAG A;  3PO3 C;  4A3M K;  3GTJ A;  2GSN A;  4Q5S A;  1O2A A;  1I3Q C;  1WOS A;  5IOS A;  1O2F B;  1ZYR A;  4A93 C;  3S1R K;  5M5Y K;  1SFO K;  1EQR A;  2JH3 A;  2NVX C;  2GAG C;  4KMA A;  3FKI C;  5IYD K;  4Y52 C;  3GTQ K;  1USM A;  3HXA A;  1F93 A;  5E68 A;  3GTL K;  3TFJ A;  2ZUE A;  2RH6 A;  2R7Z C;  1J6V A;  2E2H C;  1TWA K;  2V6U A;  5M3M K;  2KWA A;  4LK1 A;  4Y7N K;  2GAH C;  5C3E K;  4BY1 K;  4LQY A;  3GTM A;  2A68 A;  5M3F K;  4KB4 A;  4A3B K;  4KAR A;  3ORE A;  4YFX A;  4GT9 A;  1TWC A;  4A3C C;  3AD8 C;  2Y3P A;  4MEX A;  3VA7 A;  1Y1W A;  1JQW A;  4KDD A;  3PO3 K;  2BE5 A;  1I6V A;  3GTP C;  1I3Q K;  2E2I C;  4A93 K;  4PAB A;  1SFO A;  2NVX K;  2R92 C;  3FKI K;  1X31 C;  5C4J C;  4Y52 K;  5JVO A;  3S2D C;  2W7V A;  3GTL A;  1V5V A;  3AQO A;  1TWC C;  3G4A A;  3AQP A;  1R9T C;  2R7Z K;  2E2H K;  4X6A C;  1TWA A;  3S14 C;  1ISE A;  5L46 A;  3GTG C;  1WOR A;  4BBS C;  1YX2 A;  4XSX A;  3AD7 C;  4A3C K;  4QJV B;  3SZZ A;  4KAS A;  4MEY A;  3GIR A;  5HL8 A;  3TFI A;  4C45 A;  4KN7 A;  1IS1 A;  3G4C A;  4XLP A;  3GEE A;  3GDZ A;  1XXA A;  3GSI A;  3S15 C;  4C3H C;  4LJZ A;  3M4O C;  1EK8 A;  1GE9 A;  1ZBS A;  2CFA B;  3GTP K;  2E2I K;  4A3G C;  1DCP A;  1I3Q A;  1HQM A;  2NVY A;  5M5X K;  3HOY C;  2RGR A;  1XXB A;  5IOT A;  2R92 K;  2NVX A;  5C4J K;  3FKI A;  4J3N A;  3JST A;  3S2D K;  2PHC B;  5CHP A;  4LR2 A;  4NOI A;  1TWC K;  1R9T K;  3BUE A;  2R7Z A;  4X6A K;  1XZQ B;  3S14 K;  1WSV A;  2E2H A;  2P8T A;  1IQ0 A;  3GTG K;  4GFQ A;  5C4X C;  4BBS K;  4A3F C;  2O5J A;  4KC6 A;  3FOF A;  3PO2 C;  1EI6 A;  2WAQ L;  4PAA A;  1B4B A;  2NVY C;  1VLO A;  3A8I A;  2B63 A;  1DD5 A;  4G0U A;  2PMZ L;  1BGW A;  1O25 A;  3S15 K;  4GTB A;  4C3H K;  2YU9 C;  3LAP A;  2XCO A;  3M4O K;  1O2B A;  4RMF A;  2FQT A;  4BKW A;  3V4G A;  3ADA C;  1EFW A;  4A3G K;  3GTP A;  2E2I A;  4KM9 A;  4YFN A;  3OPF A;  3HOY K;  3TTG A;  3S0X A;  4QJV A;  2R92 A;  1PJ5 A;  4A3J C;  4KB2 A;  3T02 A;  2CW0 A;  5C44 C;  1Y1V C;  1R9T A;  4A3D C;  3S17 C;  1K83 A;  4OIO A;  3H3V D;  1C0A A;  1TWF C;  4GZY A;  5C4X K;  2B63 C;  2CFA A;  3GTG A;  4A3F K;  2R93 C;  3QX3 A;  2GSU A;  3GTK C;  1IBA A;  3PO2 K;  1O27 A;  3AD9 C;  2ZUF A;  4A3E C;  1WQF A;  3NUH A;  4OIP A;  4C3I C;  2NVY K;  3BP8 C;  4P5B A;  1KQ4 A;  3CQZ A;  3TFH A;  2YU9 K;  1I6H C;  2E2J C;  3HOW C;  4GTD A;  2D6F C;  2JA8 C;  4KAT A;  3K7A C;  1XZP A;  3N0C A;  1K83 C;  3A8J A;  1JVI A;  4QIW D;  4LLG A;  1RU0 A;  5M5W K;  3H0G C;  2WAQ D;  1J98 A;  4AH6 A;  1JOE A;  2VUM C;  4LOW A;  4A3J K;  4A3K C;  1AB4 A;  5C44 K;  2PMZ D;  1Y1V K;  4A3D K;  3S17 K;  5TMC A;  4OIN A;  4GTA A;  1TWF K;  2B63 K;  4WJ4 A;  3HOU C;  2R93 K;  1TWH A;  3CQZ C;  2JA6 C;  1XPP A;  4KM8 A;  1PJ7 A;  3A8K A;  3H3V L;  2NVT C;  4BBR C;  3GTK K;  5EGH A;  4MQ9 A;  4A3E K;  1WSR A;  4C3I K;  1INN A;  3GTO C;  5IOQ A;  1TWG C;  1I6H K;  2E2J K;  2YU9 A;  3HOW K;  4YFK A;  4C3J C;  2JA8 K;  4ILD A;  1VRQ C;  3K7A K;  1K83 K;  4BLA A;  3GTQ C;  4Q4Z A;  3I4N C;  1BDF A;  2O5I A;  1ZVU A;  3S16 C;  5D4D A;  1F9N A;  3H0G K;  4BY7 C;  1TWH C;  2VUM K;  3N3Y A;  4GTF A;  4A3K K;  4QIW L;  5IYC C;  3FHZ A;  1Y1V A;  3LPX A;  5JFE A;  1XXC A;  4GTC A;  1J6W A;  4AYB L;  1TWF A;  1I50 C;  4C2M C;  1WOP A;  3HOV C;  5IYB C;  3HOU K;  2A6E A;  3LAJ A;  3CQZ K;  2JA6 K;  2JA7 A;  2R93 A;  3RZO C;  3GEH A;  4GTL A;  4BBR K;  2NVT K;  3GTK A;  2NVQ C;  3N0B A;  1BS2 A;  1DCO A;  2JA5 C;  3OEP A;  3HOX C;  2P5M A;  3GTO K;  2V6S A;  1WCM C;  1UV7 A;  1ZQ1 C;  4KN4 A;  2V6T A;  4G0V A;  1TWG K;  3ERE D;  5EGE A;  1O29 A;  4C3J K;  5FJ8 K;  3S2H C;  1HI9 A;  2XCQ A;  2GSO A;  1VJE A;  3I4N K;  3M3Y C;  3S16 K;  4BY7 K;  4LK0 A;  3IPJ A;  1TWH K;  3H0G A;  2JA7 C;  1J6X A;  2VUM A;  4P9S A;  4G7O A;  5IYC K;  1O28 A;  1WIH A;  3SZY A;  1EH1 A;  1YNN A;  1I50 K;  2EBB A;  3T00 A;  4C2M K;  5IYB K;  2WB1 D;  3HOV K;  3GTJ C;  2PPB A;  1USO A;  4XCH A;  2Y0S D;  2JA6 A;  1IW7 A;  1YNJ A;  3RZO K;  4A3L C;  2PA8 L;  1XZQ A;  3S1N C;  2NVQ K;  1WQG A;  5IP7 C;  4G7H A;  4O2D A;  2JA5 K;  5FLM C;  3HOX K;  1PJ6 A; 
#chains in the Genus database with same CATH homology
 1UV7 A;  2W7V A;  5HL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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