1VGXA

Crystal structure of a autoinducer-2 synthesis protein
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
149
structure length
148
Chain Sequence
ESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Deinococcus radiodurans
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
molecule keywords S-ribosylhomocysteinase
total genus 41
structure length 148
sequence length 149
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2003-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1vgxA00
1YCLA 1J6WA 1VJEA 1J6XA 1JVIA 1IE0A 2FQOA 1VGXA 1JOEA 1J98A 1J6VA 1JQWA 2FQTA 5E68A 4XCHA 1VH2A 1INNA
chains in the Genus database with same CATH superfamily
4A3BK 1DCOA 3GTLA 3I4MK 3GTLC 4OINA 3M3YK 2P8TA 4A3JC 5M3FK 1O2FB 2JA5K 1O27A 3S1RC 2PMZL 4C2MC 1INNA 3S14C 4KMHA 4BY7C 5IYBK 1BDFA 1IW7A 1PJ7A 5IYDC 5M5WK 1I50K 3CQZA 4G0UA 3CQZC 3GTGK 1TWHA 1TWHC 3HKZL 3AQPA 4LK1A 2R7ZK 1BS2A 2JA6A 2RGRA 3N0CA 2JA6C 4DDQA 4WJ4A 3T00A 4G0WA 2V6SA 2PPBA 4P9SA 5FJ8K 3I4NC 1JOEA 3AH5A 3Q3QA 4A3DC 2R92K 1J6XA 2V6UA 2YU9C 2RH6A 1TWGC 2JA8K 2FQTA 2A6HA 3S15K 3K7AK 2O5JA 5IOQA 1EK8A 1XPPA 1O24A 3AQOA 3PO3C 3JSTA 3A8IA 1TWFA 4KAWX 1TWFC 1WSRA 3VA7A 4A3JK 5C3EK 4AH6A 1WIHA 5C44C 4GTLA 1GE9A 5FLMC 2ZUEA 3OPFA 4A3MK 4GTDA 5CJ9A 4KARA 3H3VL 5C4JC 4QJVB 4KN4A 4KN7A 4LJZA 3GTOA 1EQRA 3HOXC 5JFEA 4A3CC 3GTPC 4G0VA 4A3FC 3CQZK 5IYCC 4A3GC 1J6VA 1TWHK 4FM9A 3HOYK 2Y0SL 4YG2A 3GTQA 1Y1VA 2JA6K 1Y1VC 5TMFA 2E2HA 2E2HC 2GAHC 1O28A 3SZZA 1Y1WC 1O2AA 1L0WA 4C3HC 1J98A 1R9TA 4LK0A 4A3DK 3A8JA 1V5VA 3HOUC 3ERED 4LR2A 3AD7C 4JK1A 2NVXK 4A3EC 4GTFA 5JVOA 4GTEA 1I3QC 4A3LC 3RZDK 1AB4A 1TWFK 3IPJA 2B63A 3S16K 5C44K 3RZOK 3FKIC 4RMFA 3ADAC 4Q5SA 4PABA 4KC6A 3DXJA 3V4GA 4OIOA 1IQ0A 2PA8D 3GSIA 5C4JK 5D4DA 4KASA 4BBRC 3N3YA 2GSUA 2Y3PA 4G7OA 3GTOK 3OREA 4A3IC 4LLGA 3A8KA 4KB4A 5IYCK 4ILDA 4A3FK 4A3GK 4KB2A 4X6AK 4KM8A 4LQYA 4Y7NC 1TWAK 3GTQK 1Y1VK 1X31C 3S2DC 2CFAB 2E2HK 3GTMA 5M5YK 4QIWD 3GTMC 5L46A 4G7ZA 4C3HK 1XXBA 1WORA 4O2DA 4PAAA 4C3IC 2E2JC 1R9TK 3HOZK 2ZFZA 4BXXK 3G4CA 1IBAA 3LAJA 4XLNA 4A93K 4YFXA 3M4OC 2P5MA 4A3KK 1XZPB 5EGEA 2WAQD 4Q4ZA 2E2IK 4A3EK 3MMLB 4WILA 1HQMA 2WB1L 2A6EA 2VUMK 1WSVA 2B63K 3GEEA 1SMYA 2XCQA 3S17C 3NUHA 1HI9A 5TMCA 2JH3A 3BP8C 1WOSA 1RU0A 1VH2A 4BKWA 1USMA 3HOVC 2YU9A 1TWGA 1O26A 2BE5A 5HL8A 4A3IK 2NVYA 1ZBSA 1I6HK 2NVYC 2PMZD 4GFQA 4MEXA 3GTLK 1EI6A 4Y52C 4KDDA 3S1RK 4XSXA 4C2MK 2R93C 3S14K 3N0BA 5IP7C 4KMDA 5IORA 3AD9C 2E2JK 4BY7K 4AYBL 3T01A 1IE0A 3HKZD 1F93A 5IYDK 4BY1C 4C3JC 2JA7C 1KQ4A 3S1MC 3GTPA 3S2HC 4BBSC 1ZQ1C 3GIRA 3LPXA 1O25A 3WODA 3FHZA 1WQFA 3S17K 1Y1WA 1WCMC 3S1NC 3I4NK 1B4AA 4XLPA 2O5IA 4KMAA 4MEYA 3S0XA 4KATA 2YU9K 4J3NA 1TWGK 3GTJA 3GTJC 3PO3K 1YNJA 3HOWC 4WJ3M 1I3QA 3M3YC 2JA5C 5C4XC 1TWCA 4Y52K 1TWCC 3H3VD 3GEHA 3FKIA 5FLMK 2D6FC 5IP7K 5EGHA 2Y0SD 4G7HA 1WOPA 1K83A 3GTGA 1K83C 3HOXK 3GTGC 3S1MK 4A3CK 3GTPK 2EBBA 4M1XA 1VGXA 4YFKA 2R7ZC 1VJEA 1XZQB 3PO2C 2NVTC 3EQLA 4OIRA 1Y1WK 1O29A 2R92C 4YFNA 1F7UA 3CAGA 3S15C 1C0AA 3K7AC 5E68A 3HOUK 3GTJK 2XCRB 3HOWK 1ZYRA 2KWAA 4GZYA 1I3QK 4A3LK 5C4XK 5CHPA 5C3EC 1TWCK 3T02A 2NVQC 4C45A 4A3MC 4BLBA 3FKIK 1XXAA 1XXCA 3HXAA 3OEPA 1DCPA 1G51A 4GT9A 2XCOA 4KM9A 4BLAA 5M5XK 4BBRK 1F7VA 1K83K 5IOTA 3GTKA 2PHCB 1ISEA 3GTKC 3HOYC 1VRQC 2V6TA 4NOIA 3BP3A 1YCLA 3H0GA 3H0GC 4LOWA 4Y7NK 1B4BA 4GTBA 5M3MK 3FOFA 3PO2K 3S2DK 2NVTK 1IS1A 2R93A 3GTMK 3S1QC 4QJVA 4P5BA 4C3IK 1YNNA 1J6WA 2GAGC 1F9NA 2W7VA 2WB1D 1VLOA 2NVXA 2NVXC 3M4OK 3TTGA 2JA7A 3L4JA 3RZDC 1JQWA 1SFOA 1SFOC 3L4KA 1BJTA 3GDZA 4KMUA 3S16C 3RZOC 2NVQK 1BGWA 1YX2A 2A68A 5IOSA 1EFWA 2GSNA 1WCMA 5IP9C 3FOEA 3HOVK 3TFHA 3GTOC 4XSZA 3SZYA 1DCHA 4ZH4A 4P5AA 3AD8C 2PA8L 4A3BC 2NVYK 4X6AC 3GTKK 3I4MC 3GEIA 4MQ9A 1I6VA 1TWAA 3BUEA 2A69A 2JA5A 1TWAC 3GTQC 3H0GK 2FQOA 4AYBD 3LAPA 1WQGA 2CW0A 2R93K 3S1QK 1R9TC 1O2BA 3HOZC 4XCHA 5IYBC 4BXXC 4QIWL 4A93C 3QX3A 4A3KC 5TJ3A 1I50A 4BY1K 2E2IA 1WQHA 1I50C 4OIPA 4C3JK 2E2IC 2JA7K 4GTAA 1PJ5A 3S2HK 1IL2A 4FZBA 2VUMA 2VUMC 1SFOK 1XZQA 2GSOA 2R7ZA 2CFAA 1JVIA 4BBSK 2B63C 1DD5A 2WAQL 1ZVUA 3TFJA 1EH1A 1USOA 3G4AA 4OIQA 5IP9K 1WCMK 3S1NK 4GTCA 2R92A 3TFIA 1WOOA 1XZPA 1ZXOA 2JA8C 2ZUFA 1PJ6A 1UV7A 1I6HC
chains in the Genus database with same CATH topology
1YCLA 1J6WA 1VJEA 1J6XA 1JVIA 1IE0A 2FQOA 1VGXA 1JOEA 1J98A 1J6VA 1JQWA 2FQTA 5E68A 4XCHA 1VH2A 1INNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YCL A;  1J6W A;  1VJE A;  1J6X A;  1JVI A;  1IE0 A;  2FQO A;  1VGX A;  1JOE A;  1J98 A;  1J6V A;  1JQW A;  2FQT A;  5E68 A;  4XCH A;  1VH2 A;  1INN A; 
#chains in the Genus database with same CATH topology
 4A3B K;  1DCO A;  3GTL A;  3I4M K;  3GTL C;  4OIN A;  3M3Y K;  2P8T A;  4A3J C;  5M3F K;  1O2F B;  2JA5 K;  1O27 A;  3S1R C;  2PMZ L;  4C2M C;  1INN A;  3S14 C;  4KMH A;  4BY7 C;  5IYB K;  1BDF A;  1IW7 A;  1PJ7 A;  5IYD C;  5M5W K;  1I50 K;  3CQZ A;  4G0U A;  3CQZ C;  3GTG K;  1TWH A;  1TWH C;  3HKZ L;  3AQP A;  4LK1 A;  2R7Z K;  1BS2 A;  2JA6 A;  2RGR A;  3N0C A;  2JA6 C;  4DDQ A;  4WJ4 A;  3T00 A;  4G0W A;  2V6S A;  2PPB A;  4P9S A;  5FJ8 K;  3I4N C;  1JOE A;  3AH5 A;  3Q3Q A;  4A3D C;  2R92 K;  1J6X A;  2V6U A;  2YU9 C;  2RH6 A;  1TWG C;  2JA8 K;  2FQT A;  2A6H A;  3S15 K;  3K7A K;  2O5J A;  5IOQ A;  1EK8 A;  1XPP A;  1O24 A;  3AQO A;  3PO3 C;  3JST A;  3A8I A;  1TWF A;  4KAW X;  1TWF C;  1WSR A;  3VA7 A;  4A3J K;  5C3E K;  4AH6 A;  1WIH A;  5C44 C;  4GTL A;  1GE9 A;  5FLM C;  2ZUE A;  3OPF A;  4A3M K;  4GTD A;  5CJ9 A;  4KAR A;  3H3V L;  5C4J C;  4QJV B;  4KN4 A;  4KN7 A;  4LJZ A;  3GTO A;  1EQR A;  3HOX C;  5JFE A;  4A3C C;  3GTP C;  4G0V A;  4A3F C;  3CQZ K;  5IYC C;  4A3G C;  1J6V A;  1TWH K;  4FM9 A;  3HOY K;  2Y0S L;  4YG2 A;  3GTQ A;  1Y1V A;  2JA6 K;  1Y1V C;  5TMF A;  2E2H A;  2E2H C;  2GAH C;  1O28 A;  3SZZ A;  1Y1W C;  1O2A A;  1L0W A;  4C3H C;  1J98 A;  1R9T A;  4LK0 A;  4A3D K;  3A8J A;  1V5V A;  3HOU C;  3ERE D;  4LR2 A;  3AD7 C;  4JK1 A;  2NVX K;  4A3E C;  4GTF A;  5JVO A;  4GTE A;  1I3Q C;  4A3L C;  3RZD K;  1AB4 A;  1TWF K;  3IPJ A;  2B63 A;  3S16 K;  5C44 K;  3RZO K;  3FKI C;  4RMF A;  3ADA C;  4Q5S A;  4PAB A;  4KC6 A;  3DXJ A;  3V4G A;  4OIO A;  1IQ0 A;  2PA8 D;  3GSI A;  5C4J K;  5D4D A;  4KAS A;  4BBR C;  3N3Y A;  2GSU A;  2Y3P A;  4G7O A;  3GTO K;  3ORE A;  4A3I C;  4LLG A;  3A8K A;  4KB4 A;  5IYC K;  4ILD A;  4A3F K;  4A3G K;  4KB2 A;  4X6A K;  4KM8 A;  4LQY A;  4Y7N C;  1TWA K;  3GTQ K;  1Y1V K;  1X31 C;  3S2D C;  2CFA B;  2E2H K;  3GTM A;  5M5Y K;  4QIW D;  3GTM C;  5L46 A;  4G7Z A;  4C3H K;  1XXB A;  1WOR A;  4O2D A;  4PAA A;  4C3I C;  2E2J C;  1R9T K;  3HOZ K;  2ZFZ A;  4BXX K;  3G4C A;  1IBA A;  3LAJ A;  4XLN A;  4A93 K;  4YFX A;  3M4O C;  2P5M A;  4A3K K;  1XZP B;  5EGE A;  2WAQ D;  4Q4Z A;  2E2I K;  4A3E K;  3MML B;  4WIL A;  1HQM A;  2WB1 L;  2A6E A;  2VUM K;  1WSV A;  2B63 K;  3GEE A;  1SMY A;  2XCQ A;  3S17 C;  3NUH A;  1HI9 A;  5TMC A;  2JH3 A;  3BP8 C;  1WOS A;  1RU0 A;  1VH2 A;  4BKW A;  1USM A;  3HOV C;  2YU9 A;  1TWG A;  1O26 A;  2BE5 A;  5HL8 A;  4A3I K;  2NVY A;  1ZBS A;  1I6H K;  2NVY C;  2PMZ D;  4GFQ A;  4MEX A;  3GTL K;  1EI6 A;  4Y52 C;  4KDD A;  3S1R K;  4XSX A;  4C2M K;  2R93 C;  3S14 K;  3N0B A;  5IP7 C;  4KMD A;  5IOR A;  3AD9 C;  2E2J K;  4BY7 K;  4AYB L;  3T01 A;  1IE0 A;  3HKZ D;  1F93 A;  5IYD K;  4BY1 C;  4C3J C;  2JA7 C;  1KQ4 A;  3S1M C;  3GTP A;  3S2H C;  4BBS C;  1ZQ1 C;  3GIR A;  3LPX A;  1O25 A;  3WOD A;  3FHZ A;  1WQF A;  3S17 K;  1Y1W A;  1WCM C;  3S1N C;  3I4N K;  1B4A A;  4XLP A;  2O5I A;  4KMA A;  4MEY A;  3S0X A;  4KAT A;  2YU9 K;  4J3N A;  1TWG K;  3GTJ A;  3GTJ C;  3PO3 K;  1YNJ A;  3HOW C;  4WJ3 M;  1I3Q A;  3M3Y C;  2JA5 C;  5C4X C;  1TWC A;  4Y52 K;  1TWC C;  3H3V D;  3GEH A;  3FKI A;  5FLM K;  2D6F C;  5IP7 K;  5EGH A;  2Y0S D;  4G7H A;  1WOP A;  1K83 A;  3GTG A;  1K83 C;  3HOX K;  3GTG C;  3S1M K;  4A3C K;  3GTP K;  2EBB A;  4M1X A;  1VGX A;  4YFK A;  2R7Z C;  1VJE A;  1XZQ B;  3PO2 C;  2NVT C;  3EQL A;  4OIR A;  1Y1W K;  1O29 A;  2R92 C;  4YFN A;  1F7U A;  3CAG A;  3S15 C;  1C0A A;  3K7A C;  5E68 A;  3HOU K;  3GTJ K;  2XCR B;  3HOW K;  1ZYR A;  2KWA A;  4GZY A;  1I3Q K;  4A3L K;  5C4X K;  5CHP A;  5C3E C;  1TWC K;  3T02 A;  2NVQ C;  4C45 A;  4A3M C;  4BLB A;  3FKI K;  1XXA A;  1XXC A;  3HXA A;  3OEP A;  1DCP A;  1G51 A;  4GT9 A;  2XCO A;  4KM9 A;  4BLA A;  5M5X K;  4BBR K;  1F7V A;  1K83 K;  5IOT A;  3GTK A;  2PHC B;  1ISE A;  3GTK C;  3HOY C;  1VRQ C;  2V6T A;  4NOI A;  3BP3 A;  1YCL A;  3H0G A;  3H0G C;  4LOW A;  4Y7N K;  1B4B A;  4GTB A;  5M3M K;  3FOF A;  3PO2 K;  3S2D K;  2NVT K;  1IS1 A;  2R93 A;  3GTM K;  3S1Q C;  4QJV A;  4P5B A;  4C3I K;  1YNN A;  1J6W A;  2GAG C;  1F9N A;  2W7V A;  2WB1 D;  1VLO A;  2NVX A;  2NVX C;  3M4O K;  3TTG A;  2JA7 A;  3L4J A;  3RZD C;  1JQW A;  1SFO A;  1SFO C;  3L4K A;  1BJT A;  3GDZ A;  4KMU A;  3S16 C;  3RZO C;  2NVQ K;  1BGW A;  1YX2 A;  2A68 A;  5IOS A;  1EFW A;  2GSN A;  1WCM A;  5IP9 C;  3FOE A;  3HOV K;  3TFH A;  3GTO C;  4XSZ A;  3SZY A;  1DCH A;  4ZH4 A;  4P5A A;  3AD8 C;  2PA8 L;  4A3B C;  2NVY K;  4X6A C;  3GTK K;  3I4M C;  3GEI A;  4MQ9 A;  1I6V A;  1TWA A;  3BUE A;  2A69 A;  2JA5 A;  1TWA C;  3GTQ C;  3H0G K;  2FQO A;  4AYB D;  3LAP A;  1WQG A;  2CW0 A;  2R93 K;  3S1Q K;  1R9T C;  1O2B A;  3HOZ C;  4XCH A;  5IYB C;  4BXX C;  4QIW L;  4A93 C;  3QX3 A;  4A3K C;  5TJ3 A;  1I50 A;  4BY1 K;  2E2I A;  1WQH A;  1I50 C;  4OIP A;  4C3J K;  2E2I C;  2JA7 K;  4GTA A;  1PJ5 A;  3S2H K;  1IL2 A;  4FZB A;  2VUM A;  2VUM C;  1SFO K;  1XZQ A;  2GSO A;  2R7Z A;  2CFA A;  1JVI A;  4BBS K;  2B63 C;  1DD5 A;  2WAQ L;  1ZVU A;  3TFJ A;  1EH1 A;  1USO A;  3G4A A;  4OIQ A;  5IP9 K;  1WCM K;  3S1N K;  4GTC A;  2R92 A;  3TFI A;  1WOO A;  1XZP A;  1ZXO A;  2JA8 C;  2ZUF A;  1PJ6 A;  1UV7 A;  1I6H C; 
#chains in the Genus database with same CATH homology
 1YCL A;  1J6W A;  1VJE A;  1J6X A;  1JVI A;  1IE0 A;  2FQO A;  1VGX A;  1JOE A;  1J98 A;  1J6V A;  1JQW A;  2FQT A;  5E68 A;  4XCH A;  1VH2 A;  1INN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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