The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
149
|
structure length |
148
|
Chain Sequence |
ESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLMM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Structural Genomics Approach to the Study of Quorum Sensing: Crystal Structures of Three LuxS Orthologs
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Deinococcus radiodurans
|
| molecule keywords |
Autoinducer-2 production protein LuxS
|
| total genus |
41
|
| structure length |
148
|
| sequence length |
149
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.4.1.21: S-ribosylhomocysteine lyase. |
| pdb deposition date | 2004-02-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02664 | LuxS | S-Ribosylhomocysteinase (LuxS) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | S-ribosylhomocysteinase (LuxS) |
#chains in the Genus database with same CATH superfamily 1J98 A; 2FQO A; 1VJE A; 1JQW A; 1IE0 A; 1JOE A; 1VH2 A; 2FQT A; 1JVI A; 1J6W A; 4XCH A; 5E68 A; 1VGX A; 1J6V A; 1YCL A; 1J6X A; 1INN A; #chains in the Genus database with same CATH topology 3S16 K; 1BGW A; 3EQL A; 4KAT A; 5IYD C; 3GTO K; 3GDZ A; 2E2I K; 2NVQ K; 1TWH K; 4QIW D; 1TWC C; 4C3I K; 2WB1 L; 1IE0 A; 4Q5S A; 2BE5 A; 4A3M C; 2ZUE A; 3GTG C; 1TWF A; 2V6T A; 4XLN A; 4GTD A; 4A3C C; 3CQZ C; 3GTJ A; 1B4B A; 1EFW A; 4C3J C; 2YU9 K; 2NVT K; 1EK8 A; 5IYC K; 3S1Q C; 4LK0 A; 4KMH A; 3GTQ A; 1O2A A; 1ZYR A; 3DXJ A; 3GTM A; 4BY7 K; 1O2B A; 4GTL A; 5IP7 C; 1XXA A; 3A8K A; 3PO2 K; 1XPP A; 3GTK A; 3S1N C; 2NVY C; 3S15 C; 2W7V A; 4A93 K; 1WOO A; 1EI6 A; 3BP3 A; 1WOP A; 3HOZ K; 3S16 C; 3GTO C; 4LJZ A; 1O29 A; 1YX2 A; 4KAR A; 2E2I C; 2NVQ C; 4G7O A; 1TWH C; 1XXB A; 4C3I C; 4A3D K; 4XLP A; 3N0C A; 3GTG A; 2FQO A; 4OIP A; 1WCM C; 3CQZ A; 4YFK A; 3S1M K; 4Y52 K; 2JA5 K; 3S2H K; 1O27 A; 4P9S A; 4BY1 K; 3PO3 K; 1WIH A; 4BLA A; 2Y0S D; 2YU9 C; 1HI9 A; 2NVT C; 5IYC C; 1SFO K; 4MEX A; 2JA8 K; 4A3J K; 3S17 K; 4BY7 C; 2PA8 L; 2XCO A; 1O24 A; 2V6U A; 3I4N K; 3K7A K; 2NVY A; 3PO2 C; 4C2M K; 5EGH A; 1Y1V K; 4YG2 A; 4A93 C; 3GTO A; 5TJ3 A; 3HOZ C; 1TWH A; 3I4M K; 4KM9 A; 5FLM K; 1PJ5 A; 3VA7 A; 4A3D C; 4PAB A; 2RGR A; 4P5A A; 4A3F K; 2NVX K; 3GTL K; 1JOE A; 4GFQ A; 1JVI A; 1BS2 A; 1C0A A; 3S1M C; 4BKW A; 4Y52 C; 1VJE A; 2JA5 C; 4OIQ A; 3S2H C; 3S0X A; 4G7H A; 4BY1 C; 2R92 K; 2WAQ D; 3PO3 C; 1BJT A; 1J6X A; 2E2H K; 1WOR A; 4KMD A; 3GTP K; 3FOE A; 1O26 A; 5TMF A; 3HXA A; 4G0U A; 1SFO C; 2PMZ D; 2JA8 C; 4A3J C; 3HOW K; 3S17 C; 1IS1 A; 1J6V A; 3I4N C; 3T00 A; 1Y1W C; 3K7A C; 1O25 A; 1YNJ A; 4C2M C; 5C4X K; 1Y1V C; 1IL2 A; 1USO A; 2WB1 D; 3I4M C; 4J3N A; 5FLM C; 1K83 K; 1XZQ B; 1SMY A; 1TWG A; 1WQG A; 4KDD A; 5E68 A; 3N3Y A; 1XZP B; 4A3F C; 4BXX K; 5L46 A; 2NVX C; 3SZZ A; 3GTL C; 2EBB A; 1WCM K; 2JA7 K; 2JA5 A; 3L4J A; 1ISE A; 4LR2 A; 1F7U A; 1V5V A; 4OIR A; 4GZY A; 1DCH A; 3H3V L; 2ZUF A; 2R92 C; 1R9T K; 4QJV A; 1XZQ A; 2E2H C; 1J98 A; 3CAG A; 3GTP C; 1XZP A; 1TWA K; 3TTG A; 1I3Q A; 3GEE A; 3HOW C; 4DDQ A; 2P5M A; 4GTB A; 3HOX K; 3S14 K; 2A6H A; 5C4X C; 2VUM A; 1PJ6 A; 4Q4Z A; 3L4K A; 3V4G A; 1IBA A; 3HKZ L; 1TWC A; 4C3H K; 1K83 C; 1VGX A; 4G0V A; 5C44 K; 3AH5 A; 4A3B K; 4A3I K; 2NVX A; 4M1X A; 5C4J K; 4BXX C; 3H0G K; 2JA7 C; 3GEI A; 4O2D A; 2RH6 A; 4KN7 A; 2R92 A; 4PAA A; 5IYB K; 1R9T C; 3GTP A; 3JST A; 4LK1 A; 2PA8 D; 3IPJ A; 4A3L K; 4KN4 A; 3LAJ A; 4XSX A; 1IQ0 A; 5TMC A; 4FZB A; 4KAS A; 1TWA C; 1RU0 A; 3A8I A; 4KC6 A; 1ZBS A; 5M5W K; 5C3E K; 1Y1W K; 1TWF K; 4OIN A; 3HOX C; 3S14 C; 5M3F K; 2ZFZ A; 1F93 A; 4BLB A; 1USM A; 3TFH A; 2E2I A; 1K83 A; 4GT9 A; 1G51 A; 1O2F B; 4C3H C; 2B63 K; 3Q3Q A; 5C44 C; 4GTF A; 4A3B C; 2XCR B; 4A3I C; 4G0W A; 5M3M K; 1WCM A; 2JA7 A; 5C4J C; 1WSR A; 3H0G C; 3S1R K; 2Y3P A; 1WSV A; 3GTK K; 3ERE D; 5JVO A; 2YU9 A; 5EGE A; 2V6S A; 5IYB C; 4A3L C; 1TWA A; 3HOY K; 2FQT A; 4G7Z A; 3S2D K; 2CFA A; 2A69 A; 5C3E C; 3LAP A; 4KB2 A; 1TWF C; 3M3Y C; 2D6F C; 4WJ4 A; 1VRQ C; 3AQP A; 3BP8 C; 4KM8 A; 2JH3 A; 3GSI A; 3BUE A; 4MEY A; 1O28 A; 3FHZ A; 1EQR A; 4QJV B; 4GTC A; 2CW0 A; 3OEP A; 2B63 C; 2WAQ L; 1IW7 A; 1ZXO A; 4KAW X; 4GTE A; 1JQW A; 3H3V D; 2A68 A; 3ORE A; 4P5B A; 3RZD K; 3FKI K; 3FOF A; 2PMZ L; 4AYB L; 3S1R C; 4C45 A; 3LPX A; 3GTK C; 2R93 K; 1BDF A; 1L0W A; 4BBR K; 3N0B A; 4KB4 A; 1SFO A; 1J6W A; 3NUH A; 1YCL A; 4LOW A; 5M5Y K; 2PHC B; 3HOV K; 3HOY C; 3S2D C; 1Y1W A; 4Y7N C; 1ZVU A; 1I50 K; 4QIW L; 3HKZ D; 1Y1V A; 2O5I A; 1DD5 A; 4KMA A; 4YFX A; 2P8T A; 5CHP A; 5FJ8 K; 1DCP A; 1GE9 A; 2B63 A; 2JA6 K; 3HOU K; 1INN A; 3M4O K; 4WJ3 M; 1HQM A; 3WOD A; 3GTL A; 4X6A K; 2GSO A; 3A8J A; 2R7Z K; 4A3E K; 1WOS A; 3RZD C; 2XCQ A; 3FKI C; 4A3K K; 4FM9 A; 3AD9 C; 1KQ4 A; 4BBS K; 1B4A A; 2R93 C; 3ADA C; 2E2H A; 3TFI A; 1VH2 A; 3AD8 C; 4BBR C; 1X31 C; 5IOT A; 2PPB A; 1VLO A; 3T01 A; 3GEH A; 5IP9 K; 3HOV C; 1TWG K; 5IOR A; 1I50 C; 1WQF A; 3M3Y K; 2E2J K; 5IOQ A; 4JK1 A; 3GTJ K; 4ZH4 A; 3T02 A; 5JFE A; 2A6E A; 2KWA A; 4A3G K; 1XXC A; 2JA6 C; 3MML B; 4MQ9 A; 3HOU C; 3M4O C; 1I6H K; 1WQH A; 4LQY A; 3GTQ K; 2Y0S L; 4X6A C; 1I3Q K; 3RZO K; 2R7Z C; 3GTM K; 3AQO A; 3FKI A; 4A3E C; 1F9N A; 4GTA A; 5HL8 A; 5IOS A; 2CFA B; 4A3K C; 2R93 A; 4BBS C; 1R9T A; 2VUM K; 1F7V A; 5IYD K; 2O5J A; 4YFN A; 3AD7 C; 1EH1 A; 1I6V A; 1YNN A; 1TWC K; 3SZY A; 3OPF A; 3QX3 A; 4NOI A; 3GIR A; 4RMF A; 5IP9 C; 5D4D A; 1I50 A; 4A3M K; 1TWG C; 3GTG K; 3TFJ A; 4Y7N K; 1UV7 A; 4XSZ A; 2E2J C; 4A3C K; 1AB4 A; 1DCO A; 2GAG C; 3CQZ K; 4AH6 A; 3GTJ C; 4C3J K; 2GSN A; 2GSU A; 4KMU A; 2JA6 A; 5CJ9 A; 3S1Q K; 4A3G C; 1I6H C; 4AYB D; 3H0G A; 2R7Z A; 3GTQ C; 1I3Q C; 1ZQ1 C; 3G4A A; 4OIO A; 4ILD A; 5IP7 K; 3RZO C; 5M5X K; 3GTM C; 4WIL A; 1PJ7 A; 2GAH C; 3S1N K; 2NVY K; 3S15 K; 4LLG A; 3G4C A; 4XCH A; 2VUM C; #chains in the Genus database with same CATH homology 1J98 A; 2FQO A; 1VJE A; 1JQW A; 1IE0 A; 1JOE A; 1VH2 A; 2FQT A; 1JVI A; 1J6W A; 4XCH A; 5E68 A; 1VGX A; 1J6V A; 1YCL A; 1J6X A; 1INN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
