2EBB | Genus

Total Genus 31

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	96
structure length	96
Chain Sequence	MRLTEEEVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISIDYKLITVKLSSWRAKGLTKLDFDLAKQYDEVYNQMK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Geobacillus kaustophilus
publication title	Crystal structure of pterin-4-alpha-carbinolamine dehydratase (pterin carbinolamine dehydratase) from Geobacillus kaustophilus HTA426 rcsb
molecule keywords	Pterin-4-alpha-carbinolamine dehydratase
total genus	31
structure length	96
sequence length	96
ec nomenclature	ec 4.2.1.96: 4a-hydroxytetrahydrobiopterin dehydratase.
pdb deposition date	2007-02-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01329	Pterin_4a	Pterin 4 alpha carbinolamine dehydratase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1360.20	Alpha Beta	2-Layer Sandwich	Gyrase A; domain 2	Transcriptional coactivator/pterin dehydratase	2ebbA00

4C45A 1USMA 2V6SA 1RU0A 3JSTA 1USOA 4LOWA 2V6TA 1DCPA 2EBBA 2V6UA 4WILA 1DCOA 3HXAA 1F93A 1DCHA
chains in the Genus database with same CATH superfamily

4BXXC 4GTDA 4C2MC 5TMCA 1VJEA 2YU9A 5EGEA 3TFJA 1VGXA 2NVYA 3CQZK 1WCMC 1AB4A 2JA6C 4C3JC 5IORA 2R92K 1WOPA 3WODA 1WIHA 1Y1WA 4A3GC 3HOYK 3S2HK 3K7AK 2O5JA 3I4MK 3GEHA 3A8IA 2WAQD 3A8JA 1XZPA 4A3KC 3QX3A 3S16C 4C2MK 1B4BA 4KN4A 3H0GC 4YFXA 1F9NA 2R93C 4GTCA 4GTFA 2RH6A 1O28A 1WCMK 2CFAA 1XXAA 3S17C 3S1QC 2JA6K 4C3JK 1WORA 3FOEA 4PABA 1O2AA 2GAHC 5C4XC 2YU9C 1YNNA 4LK1A 1WOSA 3HOVC 4KATA 4A3KK 3S16K 4KARA 4XCHA 1Y1WC 3SZYA 4PAAA 4P9SA 4A3BK 4A3CC 2R93K 3S1QK 3S17K 2PMZL 2W7VA 1J6VA 3GTQA 4BBSK 4BKWA 5C4XK 4A3MC 2YU9K 2NVXA 1PJ7A 2NVYK 4KB4A 4BY1C 1O29A 3HOVK 5E68A 2A68A 1YCLA 5CJ9A 5IOQA 4XLNA 1O24A 1Y1WK 2PPBA 4A3CK 4KMHA 1I6VA 3M3YC 1J6WA 4Y52K 4A3MK 3H3VD 4A3FC 1Y1VA 1PJ5A 4LQYA 3GTQC 2XCQA 2WB1L 1DCHA 4KN7A 2NVXC 3L4JA 4BY7C 3GEIA 2RGRA 4WJ4A 4YFKA 4G0WA 3S14C 4OINA 3SZZA 2EBBA 1WQHA 4BLBA 4A3FK 1IE0A 3G4AA 3GTQK 4G7OA 4BY7K 1TWHA 1Y1VC 4MEXA 1XZQA 5EGHA 2PHCB 4BLAA 3PO2C 3S14K 4GTBA 1O25A 3AD7C 5JVOA 1O27A 3VA7A 1ZQ1C 4A3EC 2V6SA 4GTAA 1I3QA 3GTGA 1TWFA 1I6HC 1KQ4A 4OIRA 1HQMA 4MEYA 1Y1VK 4M1XA 2NVTC 4C45A 5IP9C 1BDFA 3PO2K 3HKZD 4QIWD 3AD8C 3RZOC 1WSVA 1F7UA 2PA8L 1TWHC 3H3VL 5M5YK 4A3EK 2A6HA 1INNA 4BXXK 2KWAA 1I6HK 1EK8A 3S1MC 3OREA 2JA7A 1K83A 4X6AC 2NVTK 3HOUC 1I3QC 5IOSA 4WILA 5IP9K 3GTGC 2R7ZA 1UV7A 5C3EC 4Q5SA 1TWFC 3RZOK 4O2DA 4OIOA 4A3IC 4A3GK 1TWHK 2FQOA 1GE9A 3TTGA 1ZYRA 3HOXC 3HXAA 3GTPA 4MQ9A 1ZBSA 3H0GK 5IYCC 4C3HC 4LLGA 2E2IA 4X6AK 3AD9C 1WQFA 1I3QK 1DD5A 3GTGK 3RZDC 5C3EK 1TWFK 5JFEA 4A3IK 3NUHA 5TMFA 4AH6A 3OEPA 2JA7C 1K83C 3HOXK 4J3NA 3FHZA 4G0UA 1BJTA 1TWGA 3GDZA 3T00A 4G7ZA 2R7ZC 4GTEA 4KMUA 1YNJA 3S1RC 3TFIA 3OPFA 5IYCK 4C3HK 1PJ6A 1B4AA 3BP3A 2P8TA 3I4NC 3GTPC 1I50A 3RZDK 5M3FK 1X31C 3GSIA 3ERED 1EQRA 3M4OC 4KDDA 1TWCC 1YX2A 5FLMC 2E2IC 2JA7K 1K83K 4BY1K 3BUEA 2WAQL 2GSOA 2R7ZK 5D4DA 3S1RK 1DCPA 4C3IC 3S2DC 4GZYA 1JVIA 4FM9A 3I4NK 1XZPB 3S0XA 3PO3C 3EQLA 2JA5A 3HOWC 3N0BA 1TWGC 3GTPK 2Y0SD 3M3YK 3M4OK 4A3DC 2CFAB 4KB2A 2E2IK 3GTKA 2A69A 5L46A 1ZVUA 3S15C 1I50C 3GTJA 1V5VA 2GSNA 2V6TA 4KM9A 5CHPA 2GAGC 4A3LC 4GTLA 1ISEA 2NVXK 3LAJA 1IQ0A 3S2DK 3MMLB 3PO3K 3HOWK 5M5XK 4LR2A 1TWGK 1J6XA 5IP7C 3FOFA 2P5MA 1L0WA 4LOWA 3GTMC 4KC6A 1USMA 3FKIA 2JA5C 3GTOA 2XCRB 1I50K 1XXBA 2FQTA 3T02A 1O26A 4GFQA 4A3LK 3GEEA 3AQPA 1IBAA 2PMZD 3GTKC 4KM8A 4FZBA 1BGWA 2XCOA 2R92C 1VH2A 3GTJC 5IP7K 3L4KA 4KMDA 4KAWX 1IL2A 1SMYA 2E2HA 2O5IA 4ZH4A 4QJVB 1JOEA 2JA5K 2ZUFA 4RMFA 3HOZC 3DXJA 3GTLA 1F7VA 2NVQC 4P5BA 3CAGA 3GTOC 3GTKK 3FKIC 1TWAA 3G4CA 4YG2A 4Y7NC 3GTJK 2Y0SL 4A3JC 4LK0A 3BP8C 4KASA 4OIQA 1O2FB 4ILDA 5HL8A 3JSTA 4XLPA 2WB1D 2ZFZA 2V6UA 3HOZK 4AYBD 2NVQK 2GSUA 1R9TA 4A3BC 4A93C 4YFNA 1TWCA 2E2HC 3S1MK 5M5WK 3GTOK 3FKIK 4OIPA 4P5AA 1EH1A 2BE5A 4DDQA 3HOUK 4Y7NK 4BBSC 4A3JK 3GTLC 5IYDC 2NVYC 1SFOA 4KMAA 1XZQB 5IYBC 1TWAC 3T01A 1XXCA 1IS1A 2JA8C 2B63A 5C4JC 2CW0A 4A93K 1WOOA 4XSXA 2E2HK 1C0AA 1EFWA 5C44C 1USOA 4GT9A 3S1NC 5M3MK 1J98A 4XSZA 4Y52C 3GTLK 3HKZL 4QIWL 5IYDK 1R9TC 2E2JC 1IW7A 1VRQC 5IOTA 5IYBK 1TWAK 2JH3A 3LPXA 3TFHA 2JA8K 5C4JK 2VUMA 3LAPA 3N3YA 2ZUEA 1SFOC 1VLOA 3GTMA 5C44K 4QJVA 4BBRC 3S1NK 3AH5A 4G7HA 2B63C 2PA8D 5FJ8K 1R9TK 2E2JK 1ZXOA 1TWCK 5FLMK 3CQZA 1O2BA 3N0CA 4Q4ZA 4JK1A 2R92A 2D6FC 1F93A 4AYBL 4C3IK 1SFOK 4G0VA 1WQGA 4BBRK 2Y3PA 1XPPA 3IPJA 1JQWA 2B63K 2VUMC 4NOIA 4A3DK 1RU0A 3A8KA 1WCMA 2JA6A 1G51A 3GIRA 3S15K 3AQOA 1DCOA 4WJ3M 3CQZC 1BS2A 3ADAC 2A6EA 4LJZA 3H0GA 3V4GA 1EI6A 2VUMK 1HI9A 2R93A 3HOYC 3S2HC 3GTMK 3K7AC 5TJ3A 3I4MC 3Q3QA 1WSRA
chains in the Genus database with same CATH topology

4C45A 1USMA 2V6SA 1RU0A 3JSTA 1USOA 4LOWA 2V6TA 1DCPA 2EBBA 2V6UA 4WILA 1DCOA 3HXAA 1F93A 1DCHA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4C45 A;  1USM A;  2V6S A;  1RU0 A;  3JST A;  1USO A;  4LOW A;  2V6T A;  1DCP A;  2EBB A;  2V6U A;  4WIL A;  1DCO A;  3HXA A;  1F93 A;  1DCH A; 
#chains in the Genus database with same CATH topology
 4BXX C;  4GTD A;  4C2M C;  5TMC A;  1VJE A;  2YU9 A;  5EGE A;  3TFJ A;  1VGX A;  2NVY A;  3CQZ K;  1WCM C;  1AB4 A;  2JA6 C;  4C3J C;  5IOR A;  2R92 K;  1WOP A;  3WOD A;  1WIH A;  1Y1W A;  4A3G C;  3HOY K;  3S2H K;  3K7A K;  2O5J A;  3I4M K;  3GEH A;  3A8I A;  2WAQ D;  3A8J A;  1XZP A;  4A3K C;  3QX3 A;  3S16 C;  4C2M K;  1B4B A;  4KN4 A;  3H0G C;  4YFX A;  1F9N A;  2R93 C;  4GTC A;  4GTF A;  2RH6 A;  1O28 A;  1WCM K;  2CFA A;  1XXA A;  3S17 C;  3S1Q C;  2JA6 K;  4C3J K;  1WOR A;  3FOE A;  4PAB A;  1O2A A;  2GAH C;  5C4X C;  2YU9 C;  1YNN A;  4LK1 A;  1WOS A;  3HOV C;  4KAT A;  4A3K K;  3S16 K;  4KAR A;  4XCH A;  1Y1W C;  3SZY A;  4PAA A;  4P9S A;  4A3B K;  4A3C C;  2R93 K;  3S1Q K;  3S17 K;  2PMZ L;  2W7V A;  1J6V A;  3GTQ A;  4BBS K;  4BKW A;  5C4X K;  4A3M C;  2YU9 K;  2NVX A;  1PJ7 A;  2NVY K;  4KB4 A;  4BY1 C;  1O29 A;  3HOV K;  5E68 A;  2A68 A;  1YCL A;  5CJ9 A;  5IOQ A;  4XLN A;  1O24 A;  1Y1W K;  2PPB A;  4A3C K;  4KMH A;  1I6V A;  3M3Y C;  1J6W A;  4Y52 K;  4A3M K;  3H3V D;  4A3F C;  1Y1V A;  1PJ5 A;  4LQY A;  3GTQ C;  2XCQ A;  2WB1 L;  1DCH A;  4KN7 A;  2NVX C;  3L4J A;  4BY7 C;  3GEI A;  2RGR A;  4WJ4 A;  4YFK A;  4G0W A;  3S14 C;  4OIN A;  3SZZ A;  2EBB A;  1WQH A;  4BLB A;  4A3F K;  1IE0 A;  3G4A A;  3GTQ K;  4G7O A;  4BY7 K;  1TWH A;  1Y1V C;  4MEX A;  1XZQ A;  5EGH A;  2PHC B;  4BLA A;  3PO2 C;  3S14 K;  4GTB A;  1O25 A;  3AD7 C;  5JVO A;  1O27 A;  3VA7 A;  1ZQ1 C;  4A3E C;  2V6S A;  4GTA A;  1I3Q A;  3GTG A;  1TWF A;  1I6H C;  1KQ4 A;  4OIR A;  1HQM A;  4MEY A;  1Y1V K;  4M1X A;  2NVT C;  4C45 A;  5IP9 C;  1BDF A;  3PO2 K;  3HKZ D;  4QIW D;  3AD8 C;  3RZO C;  1WSV A;  1F7U A;  2PA8 L;  1TWH C;  3H3V L;  5M5Y K;  4A3E K;  2A6H A;  1INN A;  4BXX K;  2KWA A;  1I6H K;  1EK8 A;  3S1M C;  3ORE A;  2JA7 A;  1K83 A;  4X6A C;  2NVT K;  3HOU C;  1I3Q C;  5IOS A;  4WIL A;  5IP9 K;  3GTG C;  2R7Z A;  1UV7 A;  5C3E C;  4Q5S A;  1TWF C;  3RZO K;  4O2D A;  4OIO A;  4A3I C;  4A3G K;  1TWH K;  2FQO A;  1GE9 A;  3TTG A;  1ZYR A;  3HOX C;  3HXA A;  3GTP A;  4MQ9 A;  1ZBS A;  3H0G K;  5IYC C;  4C3H C;  4LLG A;  2E2I A;  4X6A K;  3AD9 C;  1WQF A;  1I3Q K;  1DD5 A;  3GTG K;  3RZD C;  5C3E K;  1TWF K;  5JFE A;  4A3I K;  3NUH A;  5TMF A;  4AH6 A;  3OEP A;  2JA7 C;  1K83 C;  3HOX K;  4J3N A;  3FHZ A;  4G0U A;  1BJT A;  1TWG A;  3GDZ A;  3T00 A;  4G7Z A;  2R7Z C;  4GTE A;  4KMU A;  1YNJ A;  3S1R C;  3TFI A;  3OPF A;  5IYC K;  4C3H K;  1PJ6 A;  1B4A A;  3BP3 A;  2P8T A;  3I4N C;  3GTP C;  1I50 A;  3RZD K;  5M3F K;  1X31 C;  3GSI A;  3ERE D;  1EQR A;  3M4O C;  4KDD A;  1TWC C;  1YX2 A;  5FLM C;  2E2I C;  2JA7 K;  1K83 K;  4BY1 K;  3BUE A;  2WAQ L;  2GSO A;  2R7Z K;  5D4D A;  3S1R K;  1DCP A;  4C3I C;  3S2D C;  4GZY A;  1JVI A;  4FM9 A;  3I4N K;  1XZP B;  3S0X A;  3PO3 C;  3EQL A;  2JA5 A;  3HOW C;  3N0B A;  1TWG C;  3GTP K;  2Y0S D;  3M3Y K;  3M4O K;  4A3D C;  2CFA B;  4KB2 A;  2E2I K;  3GTK A;  2A69 A;  5L46 A;  1ZVU A;  3S15 C;  1I50 C;  3GTJ A;  1V5V A;  2GSN A;  2V6T A;  4KM9 A;  5CHP A;  2GAG C;  4A3L C;  4GTL A;  1ISE A;  2NVX K;  3LAJ A;  1IQ0 A;  3S2D K;  3MML B;  3PO3 K;  3HOW K;  5M5X K;  4LR2 A;  1TWG K;  1J6X A;  5IP7 C;  3FOF A;  2P5M A;  1L0W A;  4LOW A;  3GTM C;  4KC6 A;  1USM A;  3FKI A;  2JA5 C;  3GTO A;  2XCR B;  1I50 K;  1XXB A;  2FQT A;  3T02 A;  1O26 A;  4GFQ A;  4A3L K;  3GEE A;  3AQP A;  1IBA A;  2PMZ D;  3GTK C;  4KM8 A;  4FZB A;  1BGW A;  2XCO A;  2R92 C;  1VH2 A;  3GTJ C;  5IP7 K;  3L4K A;  4KMD A;  4KAW X;  1IL2 A;  1SMY A;  2E2H A;  2O5I A;  4ZH4 A;  4QJV B;  1JOE A;  2JA5 K;  2ZUF A;  4RMF A;  3HOZ C;  3DXJ A;  3GTL A;  1F7V A;  2NVQ C;  4P5B A;  3CAG A;  3GTO C;  3GTK K;  3FKI C;  1TWA A;  3G4C A;  4YG2 A;  4Y7N C;  3GTJ K;  2Y0S L;  4A3J C;  4LK0 A;  3BP8 C;  4KAS A;  4OIQ A;  1O2F B;  4ILD A;  5HL8 A;  3JST A;  4XLP A;  2WB1 D;  2ZFZ A;  2V6U A;  3HOZ K;  4AYB D;  2NVQ K;  2GSU A;  1R9T A;  4A3B C;  4A93 C;  4YFN A;  1TWC A;  2E2H C;  3S1M K;  5M5W K;  3GTO K;  3FKI K;  4OIP A;  4P5A A;  1EH1 A;  2BE5 A;  4DDQ A;  3HOU K;  4Y7N K;  4BBS C;  4A3J K;  3GTL C;  5IYD C;  2NVY C;  1SFO A;  4KMA A;  1XZQ B;  5IYB C;  1TWA C;  3T01 A;  1XXC A;  1IS1 A;  2JA8 C;  2B63 A;  5C4J C;  2CW0 A;  4A93 K;  1WOO A;  4XSX A;  2E2H K;  1C0A A;  1EFW A;  5C44 C;  1USO A;  4GT9 A;  3S1N C;  5M3M K;  1J98 A;  4XSZ A;  4Y52 C;  3GTL K;  3HKZ L;  4QIW L;  5IYD K;  1R9T C;  2E2J C;  1IW7 A;  1VRQ C;  5IOT A;  5IYB K;  1TWA K;  2JH3 A;  3LPX A;  3TFH A;  2JA8 K;  5C4J K;  2VUM A;  3LAP A;  3N3Y A;  2ZUE A;  1SFO C;  1VLO A;  3GTM A;  5C44 K;  4QJV A;  4BBR C;  3S1N K;  3AH5 A;  4G7H A;  2B63 C;  2PA8 D;  5FJ8 K;  1R9T K;  2E2J K;  1ZXO A;  1TWC K;  5FLM K;  3CQZ A;  1O2B A;  3N0C A;  4Q4Z A;  4JK1 A;  2R92 A;  2D6F C;  1F93 A;  4AYB L;  4C3I K;  1SFO K;  4G0V A;  1WQG A;  4BBR K;  2Y3P A;  1XPP A;  3IPJ A;  1JQW A;  2B63 K;  2VUM C;  4NOI A;  4A3D K;  1RU0 A;  3A8K A;  1WCM A;  2JA6 A;  1G51 A;  3GIR A;  3S15 K;  3AQO A;  1DCO A;  4WJ3 M;  3CQZ C;  1BS2 A;  3ADA C;  2A6E A;  4LJZ A;  3H0G A;  3V4G A;  1EI6 A;  2VUM K;  1HI9 A;  2R93 A;  3HOY C;  3S2H C;  3GTM K;  3K7A C;  5TJ3 A;  3I4M C;  3Q3Q A;  1WSR A; 
#chains in the Genus database with same CATH homology
 4C45 A;  1USM A;  2V6S A;  1RU0 A;  3JST A;  1USO A;  4LOW A;  2V6T A;  1DCP A;  2EBB A;  2V6U A;  4WIL A;  1DCO A;  3HXA A;  1F93 A;  1DCH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EBBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations