3GDZA

Crystal structure of arginyl-trna synthetase from klebsiella pneumoniae subsp. pneumoniae
Total Genus 32
102030405060708090100051015202530
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
106
structure length
106
Chain Sequence
SNAMNIQALLSEKVSQALIAAGAPADCEPQVRQSAKVQFGDYQANGVMAVAKKLGMAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRALQSE
10203040506070809010010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-18)S1 (28-30)EMPTYTI1 (21-24)TVIII1 (31-34)3H1 (34-36)S2 (39-41)AH3 (55-65)TII'1 (78-81)TII1 (68-71)S3 (72-78)S4 (82-87)AH2 (46-51)AH4 (89-100)Updating...
connected with : NaN
molecule tags Ligase
source organism Klebsiella pneumoniae subsp. pneumoniae
publication title Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae
rcsb
molecule keywords Arginyl-tRNA synthetase
total genus 32
structure length 106
sequence length 106
chains with identical sequence B, C, D
ec nomenclature ec 6.1.1.19: Arginine--tRNA ligase.
pdb deposition date 2009-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.70 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Arginyl tRNA synthetase N-terminal domain 3gdzA00
1F7UA 2ZUEA 2ZUFA 1IQ0A 1BS2A 1F7VA 3GDZA
chains in the Genus database with same CATH superfamily
5C3EK 3RZOK 4WJ4A 2RH6A 5IYDK 2NVYK 5FLMC 4Y7NK 3H3VD 3S2DC 3SZYA 2B63C 2R92C 1WOSA 4XSZA 3HOUC 4KDDA 5JFEA 4LK1A 2PA8L 1O27A 2FQOA 5CHPA 1Y1WK 3I4MC 3S14K 4KMHA 1TWCC 4A3KC 2A69A 4KB2A 4A3MC 4C2MC 3RZDK 3L4JA 2FQTA 1TWFA 5TMCA 2BE5A 1RU0A 1IW7A 3AQPA 4GTDA 3S1NC 1TWFC 5CJ9A 5TJ3A 4KMUA 2A68A 1I6VA 4BLAA 2GAHC 3FKIK 3OPFA 3GTQA 2Y0SD 1XXBA 3G4CA 3S15K 4BKWA 1B4BA 3GTMC 1C0AA 5M3FK 1IL2A 4YFKA 4G7ZA 2VUMK 2JA7C 4GTFA 4BBRK 2PMZD 2A6EA 3HOYK 1UV7A 4KM9A 3NUHA 3A8IA 4A3CC 3S16C 5C3EC 5IYDC 1IQ0A 4YFNA 2XCQA 3TTGA 3T01A 1EQRA 1KQ4A 2NVYC 3V4GA 4Y7NC 1DCOA 4A93K 2KWAA 1Y1WA 4OINA 2Y3PA 3FOEA 1K83K 3GTPK 4P5BA 5FLMK 3S2DK 4KASA 4Y52K 1Y1WC 2YU9A 1J6WA 1ZXOA 1WIHA 3HOUK 3M3YC 4KMDA 3HXAA 3TFHA 3SZZA 2A6HA 2WB1L 4G0VA 4PABA 4BLBA 3I4MK 1B4AA 3CAGA 4A3KK 3GTGK 2JH3A 3M4OC 3CQZA 2NVQK 3FKIA 3G4AA 4C2MK 1USOA 3ADAC 5IOSA 1O24A 5C4XK 4LJZA 2V6UA 1VRQC 3S1NK 5M5XK 2NVXK 2VUMA 4KM8A 3S15C 3S1QK 5IP9K 1XZPA 1VGXA 3L4KA 4KATA 1DD5A 3MMLB 3GTMK 3HOYC 1ZYRA 5IYBC 3T00A 2JA5K 1O25A 4OIRA 5C44C 1XZPB 2JA7K 2D6FC 4QJVA 3PO2K 1VH2A 4A93C 2R92A 4A3CK 4KAWX 4GTEA 2XCOA 1I3QK 3DXJA 4AYBL 1K83C 3GTPC 4JK1A 4QJVB 3FHZA 2GSUA 4Y52C 3LAPA 1BGWA 3TFIA 1TWCA 1YX2A 3GTGA 1G51A 1ZQ1C 4XLNA 1O26A 1WQGA 4MQ9A 4OIOA 1YNNA 4LOWA 2GAGC 3EQLA 4PAAA 4QIWL 2ZFZA 3GTOK 5EGHA 1WSRA 2R7ZC 3GTGC 3WODA 1BJTA 3M3YK 1Y1VK 2NVQC 3LPXA 2E2JK 1IS1A 5C4XC 3AH5A 3M4OK 3BP8C 3GDZA 3S1RC 2NVTC 3HOZC 1R9TC 1SMYA 2NVXC 1XXCA 3N3YA 4DDQA 3GTMA 5IYCK 3AD8C 3S1QC 5IP9C 2JA7A 4XCHA 5M5YK 4BBSC 3HKZL 2O5IA 4FM9A 1WCMK 4BY1K 2ZUFA 5C4JK 1I3QA 2JA5C 2GSOA 2ZUEA 3OEPA 4G0WA 1J98A 1IBAA 4KC6A 3S0XA 3PO2C 2NVYA 3HOWC 4FZBA 3BP3A 4WILA 4A3JK 5IYBK 2E2IC 3GSIA 1I3QC 3S1MC 4C3HK 5C44K 4OIQA 3S2HC 1HI9A 1ZVUA 1JOEA 4BY7K 1F93A 4A3EK 2R93K 4A3BK 3T02A 1I6HK 1Y1VA 5IOQA 3GTJK 1PJ6A 3Q3QA 3H3VL 1AB4A 3GTOC 1JQWA 1IE0A 1PJ5A 1WQFA 4YG2A 1BS2A 3GTKC 1Y1VC 4LQYA 1ZBSA 4J3NA 4X6AK 2E2JC 1X31C 1I50C 3JSTA 2R7ZK 3I4NC 1WOPA 2PA8D 5L46A 4BXXK 4A3LC 3N0CA 5IP7C 3LAJA 1EH1A 4RMFA 5IYCC 1WCMA 2RGRA 2NVTK 3S1RK 3HOZK 1R9TK 4A3GC 2EBBA 3VA7A 1DCPA 4KB4A 4KARA 1WCMC 4BY1C 4Q5SA 3N0BA 5C4JC 2V6TA 3GIRA 1WOOA 1J6VA 2Y0SL 4BBSK 4XLPA 3AQOA 4A3JC 5TMFA 3HOVC 4GZYA 3GEEA 4C45A 4KMAA 4C3HC 1K83A 2R93A 3GTPA 1WSVA 4A3FC 3HOWK 3GTJA 2PMZL 2E2IK 5D4DA 1VJEA 4Q4ZA 3S1MK 4BY7C 5HL8A 4YFXA 4A3EC 1TWGK 2R93C 4A3BC 1V5VA 2GSNA 3S2HK 1I6HC 4ZH4A 3GTJC 2P8TA 1JVIA 2R7ZA 3AD9C 1EK8A 3TFJA 1XXAA 4X6AC 1F7VA 4MEXA 2E2HK 1INNA 3GTKK 2JA6K 4P9SA 4G7HA 1R9TA 4BXXC 1F7UA 3H0GC 3GTLK 1O2BA 2NVXA 1I50K 5M5WK 4GTAA 3AD7C 3I4NK 4G7OA 4OIPA 2WB1D 4A3LK 3A8JA 5IP7K 1GE9A 1YCLA 1O29A 2XCRB 5FJ8K 1PJ7A 2JA5A 4A3GK 1J6XA 4C3JC 2YU9K 1TWHK 4GTBA 2E2IA 4GTLA 3QX3A 3FOFA 1TWAK 1TWGA 5E68A 1EFWA 3GEIA 4WJ3M 3HOVK 4KN7A 4ILDA 5JVOA 1HQMA 3CQZK 4AH6A 1TWGC 3PO3K 4A3IK 4A3FK 1SFOK 1WORA 2W7VA 3HOXC 3S17K 2E2HA 3GTOA 1O2FB 4P5AA 4KN4A 2O5JA 3GEHA 3GTKA 2JA6A 2WAQD 3GTQC 1BDFA 1ISEA 3GTLA 2JA8C 3K7AK 4C3IK 2PHCB 2E2HC 1I50A 1EI6A 4GFQA 4AYBD 2JA6C 3RZOC 1WQHA 1VLOA 3GTLC 4MEYA 5IORA 2PPBA 4A3DK 3BUEA 4GT9A 2B63K 1USMA 3H0GK 4QIWD 2R92K 4XSXA 4LK0A 2V6SA 1TWHA 3S14C 3OREA 1TWAA 2CFAA 4LLGA 4LR2A 3RZDC 1XZQA 2YU9C 1TWHC 1TWCK 1TWAC 4O2DA 2CFAB 4A3MK 3A8KA 3IPJA 2P5MA 1SFOA 4C3JK 1XZQB 4GTCA 1DCHA 4M1XA 3CQZC 3FKIC 3PO3C 1L0WA 2CW0A 4A3IC 1TWFK 1SFOC 3HKZD 5M3MK 3S17C 4NOIA 1F9NA 2VUMC 4BBRC 1O2AA 3K7AC 4C3IC 3HOXK 2B63A 1O28A 1YNJA 3GTQK 2WAQL 3H0GA 2JA8K 1XPPA 5IOTA 4A3DC 4G0UA 3ERED 5EGEA 3S16K
chains in the Genus database with same CATH topology
1F7UA 2ZUEA 2ZUFA 1IQ0A 1BS2A 1F7VA 3GDZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F7U A;  2ZUE A;  2ZUF A;  1IQ0 A;  1BS2 A;  1F7V A;  3GDZ A; 
#chains in the Genus database with same CATH topology
 5C3E K;  3RZO K;  4WJ4 A;  2RH6 A;  5IYD K;  2NVY K;  5FLM C;  4Y7N K;  3H3V D;  3S2D C;  3SZY A;  2B63 C;  2R92 C;  1WOS A;  4XSZ A;  3HOU C;  4KDD A;  5JFE A;  4LK1 A;  2PA8 L;  1O27 A;  2FQO A;  5CHP A;  1Y1W K;  3I4M C;  3S14 K;  4KMH A;  1TWC C;  4A3K C;  2A69 A;  4KB2 A;  4A3M C;  4C2M C;  3RZD K;  3L4J A;  2FQT A;  1TWF A;  5TMC A;  2BE5 A;  1RU0 A;  1IW7 A;  3AQP A;  4GTD A;  3S1N C;  1TWF C;  5CJ9 A;  5TJ3 A;  4KMU A;  2A68 A;  1I6V A;  4BLA A;  2GAH C;  3FKI K;  3OPF A;  3GTQ A;  2Y0S D;  1XXB A;  3G4C A;  3S15 K;  4BKW A;  1B4B A;  3GTM C;  1C0A A;  5M3F K;  1IL2 A;  4YFK A;  4G7Z A;  2VUM K;  2JA7 C;  4GTF A;  4BBR K;  2PMZ D;  2A6E A;  3HOY K;  1UV7 A;  4KM9 A;  3NUH A;  3A8I A;  4A3C C;  3S16 C;  5C3E C;  5IYD C;  1IQ0 A;  4YFN A;  2XCQ A;  3TTG A;  3T01 A;  1EQR A;  1KQ4 A;  2NVY C;  3V4G A;  4Y7N C;  1DCO A;  4A93 K;  2KWA A;  1Y1W A;  4OIN A;  2Y3P A;  3FOE A;  1K83 K;  3GTP K;  4P5B A;  5FLM K;  3S2D K;  4KAS A;  4Y52 K;  1Y1W C;  2YU9 A;  1J6W A;  1ZXO A;  1WIH A;  3HOU K;  3M3Y C;  4KMD A;  3HXA A;  3TFH A;  3SZZ A;  2A6H A;  2WB1 L;  4G0V A;  4PAB A;  4BLB A;  3I4M K;  1B4A A;  3CAG A;  4A3K K;  3GTG K;  2JH3 A;  3M4O C;  3CQZ A;  2NVQ K;  3FKI A;  3G4A A;  4C2M K;  1USO A;  3ADA C;  5IOS A;  1O24 A;  5C4X K;  4LJZ A;  2V6U A;  1VRQ C;  3S1N K;  5M5X K;  2NVX K;  2VUM A;  4KM8 A;  3S15 C;  3S1Q K;  5IP9 K;  1XZP A;  1VGX A;  3L4K A;  4KAT A;  1DD5 A;  3MML B;  3GTM K;  3HOY C;  1ZYR A;  5IYB C;  3T00 A;  2JA5 K;  1O25 A;  4OIR A;  5C44 C;  1XZP B;  2JA7 K;  2D6F C;  4QJV A;  3PO2 K;  1VH2 A;  4A93 C;  2R92 A;  4A3C K;  4KAW X;  4GTE A;  2XCO A;  1I3Q K;  3DXJ A;  4AYB L;  1K83 C;  3GTP C;  4JK1 A;  4QJV B;  3FHZ A;  2GSU A;  4Y52 C;  3LAP A;  1BGW A;  3TFI A;  1TWC A;  1YX2 A;  3GTG A;  1G51 A;  1ZQ1 C;  4XLN A;  1O26 A;  1WQG A;  4MQ9 A;  4OIO A;  1YNN A;  4LOW A;  2GAG C;  3EQL A;  4PAA A;  4QIW L;  2ZFZ A;  3GTO K;  5EGH A;  1WSR A;  2R7Z C;  3GTG C;  3WOD A;  1BJT A;  3M3Y K;  1Y1V K;  2NVQ C;  3LPX A;  2E2J K;  1IS1 A;  5C4X C;  3AH5 A;  3M4O K;  3BP8 C;  3GDZ A;  3S1R C;  2NVT C;  3HOZ C;  1R9T C;  1SMY A;  2NVX C;  1XXC A;  3N3Y A;  4DDQ A;  3GTM A;  5IYC K;  3AD8 C;  3S1Q C;  5IP9 C;  2JA7 A;  4XCH A;  5M5Y K;  4BBS C;  3HKZ L;  2O5I A;  4FM9 A;  1WCM K;  4BY1 K;  2ZUF A;  5C4J K;  1I3Q A;  2JA5 C;  2GSO A;  2ZUE A;  3OEP A;  4G0W A;  1J98 A;  1IBA A;  4KC6 A;  3S0X A;  3PO2 C;  2NVY A;  3HOW C;  4FZB A;  3BP3 A;  4WIL A;  4A3J K;  5IYB K;  2E2I C;  3GSI A;  1I3Q C;  3S1M C;  4C3H K;  5C44 K;  4OIQ A;  3S2H C;  1HI9 A;  1ZVU A;  1JOE A;  4BY7 K;  1F93 A;  4A3E K;  2R93 K;  4A3B K;  3T02 A;  1I6H K;  1Y1V A;  5IOQ A;  3GTJ K;  1PJ6 A;  3Q3Q A;  3H3V L;  1AB4 A;  3GTO C;  1JQW A;  1IE0 A;  1PJ5 A;  1WQF A;  4YG2 A;  1BS2 A;  3GTK C;  1Y1V C;  4LQY A;  1ZBS A;  4J3N A;  4X6A K;  2E2J C;  1X31 C;  1I50 C;  3JST A;  2R7Z K;  3I4N C;  1WOP A;  2PA8 D;  5L46 A;  4BXX K;  4A3L C;  3N0C A;  5IP7 C;  3LAJ A;  1EH1 A;  4RMF A;  5IYC C;  1WCM A;  2RGR A;  2NVT K;  3S1R K;  3HOZ K;  1R9T K;  4A3G C;  2EBB A;  3VA7 A;  1DCP A;  4KB4 A;  4KAR A;  1WCM C;  4BY1 C;  4Q5S A;  3N0B A;  5C4J C;  2V6T A;  3GIR A;  1WOO A;  1J6V A;  2Y0S L;  4BBS K;  4XLP A;  3AQO A;  4A3J C;  5TMF A;  3HOV C;  4GZY A;  3GEE A;  4C45 A;  4KMA A;  4C3H C;  1K83 A;  2R93 A;  3GTP A;  1WSV A;  4A3F C;  3HOW K;  3GTJ A;  2PMZ L;  2E2I K;  5D4D A;  1VJE A;  4Q4Z A;  3S1M K;  4BY7 C;  5HL8 A;  4YFX A;  4A3E C;  1TWG K;  2R93 C;  4A3B C;  1V5V A;  2GSN A;  3S2H K;  1I6H C;  4ZH4 A;  3GTJ C;  2P8T A;  1JVI A;  2R7Z A;  3AD9 C;  1EK8 A;  3TFJ A;  1XXA A;  4X6A C;  1F7V A;  4MEX A;  2E2H K;  1INN A;  3GTK K;  2JA6 K;  4P9S A;  4G7H A;  1R9T A;  4BXX C;  1F7U A;  3H0G C;  3GTL K;  1O2B A;  2NVX A;  1I50 K;  5M5W K;  4GTA A;  3AD7 C;  3I4N K;  4G7O A;  4OIP A;  2WB1 D;  4A3L K;  3A8J A;  5IP7 K;  1GE9 A;  1YCL A;  1O29 A;  2XCR B;  5FJ8 K;  1PJ7 A;  2JA5 A;  4A3G K;  1J6X A;  4C3J C;  2YU9 K;  1TWH K;  4GTB A;  2E2I A;  4GTL A;  3QX3 A;  3FOF A;  1TWA K;  1TWG A;  5E68 A;  1EFW A;  3GEI A;  4WJ3 M;  3HOV K;  4KN7 A;  4ILD A;  5JVO A;  1HQM A;  3CQZ K;  4AH6 A;  1TWG C;  3PO3 K;  4A3I K;  4A3F K;  1SFO K;  1WOR A;  2W7V A;  3HOX C;  3S17 K;  2E2H A;  3GTO A;  1O2F B;  4P5A A;  4KN4 A;  2O5J A;  3GEH A;  3GTK A;  2JA6 A;  2WAQ D;  3GTQ C;  1BDF A;  1ISE A;  3GTL A;  2JA8 C;  3K7A K;  4C3I K;  2PHC B;  2E2H C;  1I50 A;  1EI6 A;  4GFQ A;  4AYB D;  2JA6 C;  3RZO C;  1WQH A;  1VLO A;  3GTL C;  4MEY A;  5IOR A;  2PPB A;  4A3D K;  3BUE A;  4GT9 A;  2B63 K;  1USM A;  3H0G K;  4QIW D;  2R92 K;  4XSX A;  4LK0 A;  2V6S A;  1TWH A;  3S14 C;  3ORE A;  1TWA A;  2CFA A;  4LLG A;  4LR2 A;  3RZD C;  1XZQ A;  2YU9 C;  1TWH C;  1TWC K;  1TWA C;  4O2D A;  2CFA B;  4A3M K;  3A8K A;  3IPJ A;  2P5M A;  1SFO A;  4C3J K;  1XZQ B;  4GTC A;  1DCH A;  4M1X A;  3CQZ C;  3FKI C;  3PO3 C;  1L0W A;  2CW0 A;  4A3I C;  1TWF K;  1SFO C;  3HKZ D;  5M3M K;  3S17 C;  4NOI A;  1F9N A;  2VUM C;  4BBR C;  1O2A A;  3K7A C;  4C3I C;  3HOX K;  2B63 A;  1O28 A;  1YNJ A;  3GTQ K;  2WAQ L;  3H0G A;  2JA8 K;  1XPP A;  5IOT A;  4A3D C;  4G0U A;  3ERE D;  5EGE A;  3S16 K; 
#chains in the Genus database with same CATH homology
 1F7U A;  2ZUE A;  2ZUF A;  1IQ0 A;  1BS2 A;  1F7V A;  3GDZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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