5HL8A

1.93 angstrom resolution crystal structure of a pullulanase-specific type ii secretion system integral cytoplasmic membrane protein gspl (c-terminal fragment; residues 309-397) from klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
81
structure length
81
Chain Sequence
HAPLVDRLSALQNILSETPGIRLRALSWDAAGNRLQLDIAAVSSRALEQFTQRAQPRFRVRPGDMITKPDGIEGQLTLEEN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
source organism Klebsiella pneumoniae subsp. pneumoniae ntuh-k2044
publication title 1.93 Angstrom resolution crystal structure of a pullulanase-specific type II secretion system integral cytoplasmic membrane protein GspL (C-terminal fragment; residues 309-397) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
rcsb
molecule keywords Type II secretion system protein L
total genus 21
structure length 81
sequence length 81
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-01-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 5hl8A00
2W7VA 1UV7A 5HL8A
chains in the Genus database with same CATH superfamily
4OIPA 4C3JC 2ZFZA 3JSTA 2P5MA 4A3IC 1WORA 3ERED 1IL2A 5IYDK 4Y52C 3S1NK 4J3NA 3AQPA 5C4XC 4A3KC 3S16K 3GEEA 3I4NK 2B63K 4BLBA 2JA6A 1TWGA 1K83K 1XXCA 4G7ZA 3S1RK 1F7UA 2R7ZC 1F93A 5IYDC 5TJ3A 5E68A 3S2DK 1L0WA 4A3CK 4NOIA 3G4CA 5IYBK 3PO2C 4LJZA 2JA6K 1TWGK 4BKWA 3S1RC 1F9NA 3GSIA 3IPJA 3S1MC 3GTPA 3GTJC 3DXJA 4FM9A 3M4OC 1YNJA 2NVYA 2PA8L 5C4JK 3HOZK 5M3MK 2VUMA 1PJ6A 3GTPK 1TWCA 1XZPA 1EQRA 3H0GA 2JA5A 2NVXC 1ZQ1C 3LPXA 1O27A 3S0XA 3GTOC 3H3VD 3K7AC 3HOYK 4KDDA 2NVYK 4OINA 4GTEA 4BY1C 4A3BK 1XZPB 3V4GA 3FOEA 3GTMC 3GDZA 2VUMK 4BXXK 1TWCK 3H0GK 2JA5K 1ZXOA 2XCRB 2W7VA 1KQ4A 1X31C 3GEIA 3RZDK 2NVYC 4YFXA 1I3QA 2Y0SD 1BGWA 3GEHA 3FHZA 2E2IC 4A3MK 4BXXC 4BBRC 1O29A 1PJ7A 1XZQA 2JA5C 5IOSA 1VGXA 4OIOA 3H3VL 1B4AA 3T02A 1WIHA 1I3QK 1XZQB 3NUHA 1SFOC 5C3EC 3Q3QA 4A3DC 1TWHA 2ZUEA 3HOWC 2PPBA 3HXAA 4Y7NK 3BP3A 2CW0A 4A93K 1I6HK 1TWFC 4KARA 1XXBA 4GTDA 3M3YK 4LQYA 3CAGA 1TWHK 5HL8A 1BS2A 5L46A 4A93C 1I6HC 5M3FK 1SMYA 1ISEA 3GTQC 4G0WA 2WAQD 2XCQA 4LK0A 1EK8A 4BBSK 2NVTK 4C45A 3FKIC 4C3JK 2R7ZA 2KWAA 1ZVUA 4A3IK 3CQZC 3MMLB 2ZUFA 4Y52K 1AB4A 4G7OA 2V6SA 4P9SA 5C4XK 4RMFA 3VA7A 4A3KK 2A6HA 4QJVA 1Y1WC 3S14K 5EGHA 3GTJA 4ILDA 5C44K 3ADAC 2R7ZK 5IP9C 5FJ8K 3GTLC 4C3HC 3HOUK 1I50C 3FOFA 4KMHA 3OPFA 2E2JK 4QJVB 3PO2K 3S14C 3LAPA 3S1MK 5C44C 1R9TA 3GTJK 4LR2A 2NVXA 3HOUC 2YU9C 3M4OK 3I4MC 2E2JC 3GTOA 1RU0A 4X6AC 3L4JA 4MEYA 4BY7C 1O2AA 3GTMA 1R9TK 2NVXK 1J6XA 1WOPA 2A69A 4M1XA 1WCMC 3GTOK 2R93A 4A3EK 3K7AK 5IOQA 3AH5A 4KASA 1C0AA 2E2IA 4G0VA 4BY1K 4OIRA 3WODA 4XLNA 5IYCK 2XCOA 1R9TC 2EBBA 1DCPA 3GTMK 1O28A 5IOTA 5EGEA 4A3EC 1TWAA 4GTFA 4C2MC 2R93K 4KAWX 4KM9A 2E2IK 1WSVA 5IYCC 2JH3A 2CFAA 4GTLA 1SFOA 1UV7A 4Q4ZA 4BBRK 4KB4A 1JVIA 3GTKC 1VJEA 1DCHA 2R93C 4Q5SA 1F7VA 4LK1A 1IS1A 1TWAK 1TWFA 1VH2A 2CFAB 2GAHC 1YCLA 4WJ3M 4KB2A 4WILA 1USMA 5CHPA 1ZYRA 4GFQA 5C3EK 1SFOK 3OREA 4A3DK 3S15C 3HOWK 1TWAC 3GTQA 1TWFK 2A68A 4AH6A 4P5BA 3QX3A 5JFEA 1IE0A 3L4KA 1JQWA 3G4AA 5D4DA 3S1QC 4KATA 2Y0SL 3A8IA 3FKIA 1IQ0A 5IORA 4WJ4A 2GSUA 3GTQK 4YFKA 3CQZA 5JVOA 1B4BA 2E2HC 1Y1WA 2V6UA 2FQTA 2PMZD 1HQMA 3FKIK 3RZOC 3GTLA 3CQZK 3AQOA 2BE5A 4KM8A 1I50A 2O5JA 5FLMC 4YFNA 4KN7A 2NVQC 1Y1WK 2A6EA 1WOSA 4XLPA 1O2FB 3A8KA 4XSXA 2YU9A 5IP9K 3GTLK 4C3HK 1I50K 3GTGA 4KMDA 3N3YA 2P8TA 3AD8C 1WQFA 1XPPA 2WAQL 4A3GC 1YX2A 4G0UA 4A3LC 1BJTA 2YU9K 1DD5A 1I6VA 3I4MK 1WCMA 4X6AK 3N0CA 2JA7C 4BY7K 4JK1A 3T00A 3HOVC 5IP7C 2B63A 4P5AA 4AYBD 4LOWA 2RGRA 1DCOA 1WOOA 4XCHA 3GTGC 1O26A 1WCMK 2WB1D 3OEPA 2JA8K 4DDQA 2GSOA 4KMUA 1YNNA 2NVTC 3GTKA 2PA8D 4KMAA 4YG2A 4BLAA 4C2MK 2JA8C 4QIWD 3T01A 3S1NC 5M5WK 4AYBL 1J6WA 3S16C 1J6VA 3I4NC 2B63C 2RH6A 1K83C 2WB1L 3GTKK 1VLOA 5TMFA 2R92A 1EI6A 1J98A 3S2DC 4A3CC 3EQLA 5IYBC 3AD7C 2JA6C 1TWGC 3S15K 1Y1VA 4GTAA 4QIWL 2GAGC 2R92K 3S2HK 4MQ9A 1IW7A 1G51A 2FQOA 1ZBSA 5C4JC 2E2HA 3HOZC 1VRQC 3S1QK 4MEXA 3GTPC 3GIRA 1Y1VK 2R92C 3S2HC 2D6FC 4KC6A 5CJ9A 4GTBA 3N0BA 3SZZA 1XXAA 1HI9A 1WSRA 4GZYA 3HOYC 3TFIA 4A3BC 5M5XK 2Y3PA 5M5YK 1O24A 3TFJA 2E2HK 1Y1VC 4XSZA 1JOEA 2VUMC 1TWCC 2O5IA 3A8JA 3H0GC 2V6TA 1WQGA 3BP8C 3RZOK 3RZDC 3LAJA 5FLMK 4C3IK 4A3MC 3TFHA 2NVQK 4G7HA 4KN4A 3TTGA 4GT9A 4PABA 3AD9C 4C3IC 1EFWA 2JA7A 1I3QC 1O25A 3BUEA 1INNA 1V5VA 4LLGA 3HOXK 1O2BA 4A3JK 1USOA 3S17K 3PO3K 4A3GK 4Y7NC 4A3LK 1WQHA 3HKZD 4GTCA 2PMZL 2JA7K 4OIQA 3M3YC 3HOXC 1EH1A 3SZYA 4A3JC 3HOVK 5IP7K 1PJ5A 3S17C 3PO3C 1TWHC 2GSNA 4O2DA 4A3FK 1IBAA 3GTGK 1GE9A 4FZBA 1BDFA 2PHCB 4PAAA 4ZH4A 4BBSC 3HKZL 5TMCA 1K83A 4A3FC
chains in the Genus database with same CATH topology
2W7VA 1UV7A 5HL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W7V A;  1UV7 A;  5HL8 A; 
#chains in the Genus database with same CATH topology
 4OIP A;  4C3J C;  2ZFZ A;  3JST A;  2P5M A;  4A3I C;  1WOR A;  3ERE D;  1IL2 A;  5IYD K;  4Y52 C;  3S1N K;  4J3N A;  3AQP A;  5C4X C;  4A3K C;  3S16 K;  3GEE A;  3I4N K;  2B63 K;  4BLB A;  2JA6 A;  1TWG A;  1K83 K;  1XXC A;  4G7Z A;  3S1R K;  1F7U A;  2R7Z C;  1F93 A;  5IYD C;  5TJ3 A;  5E68 A;  3S2D K;  1L0W A;  4A3C K;  4NOI A;  3G4C A;  5IYB K;  3PO2 C;  4LJZ A;  2JA6 K;  1TWG K;  4BKW A;  3S1R C;  1F9N A;  3GSI A;  3IPJ A;  3S1M C;  3GTP A;  3GTJ C;  3DXJ A;  4FM9 A;  3M4O C;  1YNJ A;  2NVY A;  2PA8 L;  5C4J K;  3HOZ K;  5M3M K;  2VUM A;  1PJ6 A;  3GTP K;  1TWC A;  1XZP A;  1EQR A;  3H0G A;  2JA5 A;  2NVX C;  1ZQ1 C;  3LPX A;  1O27 A;  3S0X A;  3GTO C;  3H3V D;  3K7A C;  3HOY K;  4KDD A;  2NVY K;  4OIN A;  4GTE A;  4BY1 C;  4A3B K;  1XZP B;  3V4G A;  3FOE A;  3GTM C;  3GDZ A;  2VUM K;  4BXX K;  1TWC K;  3H0G K;  2JA5 K;  1ZXO A;  2XCR B;  2W7V A;  1KQ4 A;  1X31 C;  3GEI A;  3RZD K;  2NVY C;  4YFX A;  1I3Q A;  2Y0S D;  1BGW A;  3GEH A;  3FHZ A;  2E2I C;  4A3M K;  4BXX C;  4BBR C;  1O29 A;  1PJ7 A;  1XZQ A;  2JA5 C;  5IOS A;  1VGX A;  4OIO A;  3H3V L;  1B4A A;  3T02 A;  1WIH A;  1I3Q K;  1XZQ B;  3NUH A;  1SFO C;  5C3E C;  3Q3Q A;  4A3D C;  1TWH A;  2ZUE A;  3HOW C;  2PPB A;  3HXA A;  4Y7N K;  3BP3 A;  2CW0 A;  4A93 K;  1I6H K;  1TWF C;  4KAR A;  1XXB A;  4GTD A;  3M3Y K;  4LQY A;  3CAG A;  1TWH K;  5HL8 A;  1BS2 A;  5L46 A;  4A93 C;  1I6H C;  5M3F K;  1SMY A;  1ISE A;  3GTQ C;  4G0W A;  2WAQ D;  2XCQ A;  4LK0 A;  1EK8 A;  4BBS K;  2NVT K;  4C45 A;  3FKI C;  4C3J K;  2R7Z A;  2KWA A;  1ZVU A;  4A3I K;  3CQZ C;  3MML B;  2ZUF A;  4Y52 K;  1AB4 A;  4G7O A;  2V6S A;  4P9S A;  5C4X K;  4RMF A;  3VA7 A;  4A3K K;  2A6H A;  4QJV A;  1Y1W C;  3S14 K;  5EGH A;  3GTJ A;  4ILD A;  5C44 K;  3ADA C;  2R7Z K;  5IP9 C;  5FJ8 K;  3GTL C;  4C3H C;  3HOU K;  1I50 C;  3FOF A;  4KMH A;  3OPF A;  2E2J K;  4QJV B;  3PO2 K;  3S14 C;  3LAP A;  3S1M K;  5C44 C;  1R9T A;  3GTJ K;  4LR2 A;  2NVX A;  3HOU C;  2YU9 C;  3M4O K;  3I4M C;  2E2J C;  3GTO A;  1RU0 A;  4X6A C;  3L4J A;  4MEY A;  4BY7 C;  1O2A A;  3GTM A;  1R9T K;  2NVX K;  1J6X A;  1WOP A;  2A69 A;  4M1X A;  1WCM C;  3GTO K;  2R93 A;  4A3E K;  3K7A K;  5IOQ A;  3AH5 A;  4KAS A;  1C0A A;  2E2I A;  4G0V A;  4BY1 K;  4OIR A;  3WOD A;  4XLN A;  5IYC K;  2XCO A;  1R9T C;  2EBB A;  1DCP A;  3GTM K;  1O28 A;  5IOT A;  5EGE A;  4A3E C;  1TWA A;  4GTF A;  4C2M C;  2R93 K;  4KAW X;  4KM9 A;  2E2I K;  1WSV A;  5IYC C;  2JH3 A;  2CFA A;  4GTL A;  1SFO A;  1UV7 A;  4Q4Z A;  4BBR K;  4KB4 A;  1JVI A;  3GTK C;  1VJE A;  1DCH A;  2R93 C;  4Q5S A;  1F7V A;  4LK1 A;  1IS1 A;  1TWA K;  1TWF A;  1VH2 A;  2CFA B;  2GAH C;  1YCL A;  4WJ3 M;  4KB2 A;  4WIL A;  1USM A;  5CHP A;  1ZYR A;  4GFQ A;  5C3E K;  1SFO K;  3ORE A;  4A3D K;  3S15 C;  3HOW K;  1TWA C;  3GTQ A;  1TWF K;  2A68 A;  4AH6 A;  4P5B A;  3QX3 A;  5JFE A;  1IE0 A;  3L4K A;  1JQW A;  3G4A A;  5D4D A;  3S1Q C;  4KAT A;  2Y0S L;  3A8I A;  3FKI A;  1IQ0 A;  5IOR A;  4WJ4 A;  2GSU A;  3GTQ K;  4YFK A;  3CQZ A;  5JVO A;  1B4B A;  2E2H C;  1Y1W A;  2V6U A;  2FQT A;  2PMZ D;  1HQM A;  3FKI K;  3RZO C;  3GTL A;  3CQZ K;  3AQO A;  2BE5 A;  4KM8 A;  1I50 A;  2O5J A;  5FLM C;  4YFN A;  4KN7 A;  2NVQ C;  1Y1W K;  2A6E A;  1WOS A;  4XLP A;  1O2F B;  3A8K A;  4XSX A;  2YU9 A;  5IP9 K;  3GTL K;  4C3H K;  1I50 K;  3GTG A;  4KMD A;  3N3Y A;  2P8T A;  3AD8 C;  1WQF A;  1XPP A;  2WAQ L;  4A3G C;  1YX2 A;  4G0U A;  4A3L C;  1BJT A;  2YU9 K;  1DD5 A;  1I6V A;  3I4M K;  1WCM A;  4X6A K;  3N0C A;  2JA7 C;  4BY7 K;  4JK1 A;  3T00 A;  3HOV C;  5IP7 C;  2B63 A;  4P5A A;  4AYB D;  4LOW A;  2RGR A;  1DCO A;  1WOO A;  4XCH A;  3GTG C;  1O26 A;  1WCM K;  2WB1 D;  3OEP A;  2JA8 K;  4DDQ A;  2GSO A;  4KMU A;  1YNN A;  2NVT C;  3GTK A;  2PA8 D;  4KMA A;  4YG2 A;  4BLA A;  4C2M K;  2JA8 C;  4QIW D;  3T01 A;  3S1N C;  5M5W K;  4AYB L;  1J6W A;  3S16 C;  1J6V A;  3I4N C;  2B63 C;  2RH6 A;  1K83 C;  2WB1 L;  3GTK K;  1VLO A;  5TMF A;  2R92 A;  1EI6 A;  1J98 A;  3S2D C;  4A3C C;  3EQL A;  5IYB C;  3AD7 C;  2JA6 C;  1TWG C;  3S15 K;  1Y1V A;  4GTA A;  4QIW L;  2GAG C;  2R92 K;  3S2H K;  4MQ9 A;  1IW7 A;  1G51 A;  2FQO A;  1ZBS A;  5C4J C;  2E2H A;  3HOZ C;  1VRQ C;  3S1Q K;  4MEX A;  3GTP C;  3GIR A;  1Y1V K;  2R92 C;  3S2H C;  2D6F C;  4KC6 A;  5CJ9 A;  4GTB A;  3N0B A;  3SZZ A;  1XXA A;  1HI9 A;  1WSR A;  4GZY A;  3HOY C;  3TFI A;  4A3B C;  5M5X K;  2Y3P A;  5M5Y K;  1O24 A;  3TFJ A;  2E2H K;  1Y1V C;  4XSZ A;  1JOE A;  2VUM C;  1TWC C;  2O5I A;  3A8J A;  3H0G C;  2V6T A;  1WQG A;  3BP8 C;  3RZO K;  3RZD C;  3LAJ A;  5FLM K;  4C3I K;  4A3M C;  3TFH A;  2NVQ K;  4G7H A;  4KN4 A;  3TTG A;  4GT9 A;  4PAB A;  3AD9 C;  4C3I C;  1EFW A;  2JA7 A;  1I3Q C;  1O25 A;  3BUE A;  1INN A;  1V5V A;  4LLG A;  3HOX K;  1O2B A;  4A3J K;  1USO A;  3S17 K;  3PO3 K;  4A3G K;  4Y7N C;  4A3L K;  1WQH A;  3HKZ D;  4GTC A;  2PMZ L;  2JA7 K;  4OIQ A;  3M3Y C;  3HOX C;  1EH1 A;  3SZY A;  4A3J C;  3HOV K;  5IP7 K;  1PJ5 A;  3S17 C;  3PO3 C;  1TWH C;  2GSN A;  4O2D A;  4A3F K;  1IBA A;  3GTG K;  1GE9 A;  4FZB A;  1BDF A;  2PHC B;  4PAA A;  4ZH4 A;  4BBS C;  3HKZ L;  5TMC A;  1K83 A;  4A3F C; 
#chains in the Genus database with same CATH homology
 2W7V A;  1UV7 A;  5HL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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