1UKFA

Crystal structure of pseudomonas avirulence protein avrpphb
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
188
structure length
188
Chain Sequence
SLSDFSVASRDVNHNNICAGLSTEWLVMSSDGDAESRMDHLDYNGEGQSRGSERHQVYNDALRAALSNDDEAPFFTASTAVIEDAGFSLRREPKTVHASGGSAQLGQTVAHDVAQSGRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQSSRSAAPQLIKGLIDHYNSLNYDVACVNEFRVSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Avirulence protein AVRPPH3
publication title The crystal structure of Pseudomonas avirulence protein AvrPphB: a papain-like fold with a distinct substrate-binding site.
pubmed doi rcsb
source organism Pseudomonas syringae pv. phaseolicola
total genus 68
structure length 188
sequence length 188
ec nomenclature
pdb deposition date 2003-08-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.20 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 1ukfA00
1UKFA
chains in the Genus database with same CATH superfamily
1PPOA 3U8EA 1CSBB 1KHQA 3P5VA 4P6EA 5CVMA 5CVNB 1GLOA 3CH3X 2PREA 4G54A 4Q8GA 3PNRA 2PNSA 4REZA 4BS5A 2XU4A 4CDFB 1ME4A 1KXRA 2FE8A 3E9SA 2R6NA 1NLJA 2O6XA 2AUXA 1FH0A 5CHTA 1O0EA 3RVWA 1ZIVA 1SNKA 3H8BA 3PDFA 3MP2A 2IBIA 3HD3A 1PADA 3DF0A 4KLBA 1F2CA 1U9WA 1ICFA 4M0WA 3TNXA 4YVAA 3H6SA 2XU3A 2NQIA 4FJCA 2DJFB 4XUIA 2FTDA 2F1GA 1PVJA 4FK5A 1NB3A 4YYUA 2J7QC 2ARYA 2AS8A 1POPA 4HWYA 4PT5A 3MORA 3WXGA 1MDWA 4IUMA 4N79A 2YJBA 1PCIA 2HHNA 2UZJA 2E03A 1AYUA 1YT7A 1YZBA 4PADA 3C0RA 3BPFA 2YJ8A 2HXZA 3MTNA 3PW3A 2DCDA 4YYSA 1PXVA 2E01A 4D8IA 2AIMA 2BDZA 3BC3A 1KFXL 5JA7A 4BOZA 5EF4A 4I04A 2P0RA 1MS6A 1U5IA 2E02A 4WURA 4DMXA 1NL6A 3HHIA 4MZOA 1YK8A 3N4CA 4AXLA 2DOSA 1U9XA 4RY2A 2BDLA 4X6IA 3O1GA 3OISA 1VSNA 1ZCMA 4QRXA 3E1ZB 2R9CA 3USVA 2IPPB 1U9VA 4OVZB 4P6GA 1AU0A 1IWDA 1PIPA 3F75A 2CB5A 3QSDA 1ME3A 2ATOA 2OULA 3NHEA 3PRMA 4BOSA 1DEUA 8PCHA 3GCBA 3IEJA 3ERVA 3BWKA 1BQIA 5K16A 1CJLA 3W30A 3IOQA 4PI3A 1JQPA 4RKXA 5F02A 2JQGR 1F2BA 4QRGA 2XU5A 1THEA 1EWPA 2G6DA 3TRKA 1NQCA 2DCAA 2R9NA 2Z84A 5EZSA 2DJGB 4I05A 3OF8A 2AYNA 4N4ZA 1Y08A 2FO5A 4QRVA 5EZQA 3W31A 3IV2A 3OVXA 1TU6A 4BOPA 1AIMA 1DF0A 4OW0A 3B21A 4XR7A 1AU4A 4A5UA 1A6RA 1MIRA 1TLOA 2AGAA 3IFUA 2VHSA 4BPVA 1PBHA 1QMYA 1YVBA 2DC9A 3BCNA 2FYEA 3HWNA 5E6JA 1NB5A 1QDQA 1GCBA 1ITOA 2PADA 3BPMA 2WBFX 1PE6A 3PHUA 1U9QX 2FRAA 3BB7A 2NQGA 1CTEA 4MSXA 5FPWA 3P5XA 2ACTA 1F29A 2GHUA 4XZXA 1KFUL 1YALA 3O65A 2G8EA 4D8BA 2HH5A 3I3TA 7PCKA 1CQDA 3KSEA 3CBJA 2Y6EA 3WXFA 2F7DA 3LFYA 1CB5A 2DZZA 1GMYA 3MTVA 4YYWA 2H7JA 1S4VA 1QOLA 3IMAA 1K3BB 4PP1A 5JZEA 2BTWB 2FRQA 1AU2A 4YV8A 1AYWA 4CDEB 1MEGA 3LXSA 3PRPA 4RF0A 3S3RA 4CZWA 3K24A 1EWLA 4MZSA 4HXDB 5PADA 3ZNHA 4BQVA 1CVZA 2CIOA 6PADA 2GFOA 3HHAA 5J94A 4OEMA 3V6EA 4X6HA 2JQFR 2Y5BA 1MEMA 4W5CA 4K7CA 4X6JA 2C0YA 1AU3A 1VJVA 3P5UA 2E00A 1EWMA 2FT2A 5EGWA 4PP2E 2PBHA 3B79A 2B1NA 4QH6A 2JRIA 3QT4A 5JH3A 4YYQA 4GUAA 3H89A 2BU3A 2R9MA 3CBKA 3PHWA 2BTWA 1BY8A 2YJ9A 2NQDB 1M6DA 3IUTA 1TL9A 2HWKA 4BOQA 1X9YA 3O0UA 4OVZA 3C9EA 3MJ5A 2AUZA 3PBHA 1CPJA 4FIPA 3I06A 4P16A 4W5BA 2R9FA 3PSEA 4AXMA 1AYVA 4D8EA 2DC6A 4CDCB 3KKUA 5A24A 3RNVA 4BOUA 3F5VA 3IHPA 1Y4HA 3V6CA 4Q8HA 2DC7A 3PHXA 1QXPA 2NQAA 4I07A 1BGOA 4QBBA 1DKIA 1CS8A 3BOWA 3P5WA 4OELA 2AVWA 3N3KA 2HD5A 1EF7A 3K9MA 3KWBX 2AU1A 4W4UA 1BP4A 2DZYA 1UKFA 9PAPA 4N8WA 1STFE 1HUCB 3K8UA 3CH2X 3KFQA 2DCBA 3WXEA 2J7QA 2VHFA 2R9OA 1EWOA 3KW9A 2OZ2A 2B1MA 4YYVA 3H7DA 3KX1A 2YJ2A 5CVOB 2AYOA 1PPNA 3BBAA 4BSQA 3M99A 2P7UA 3PT2A 3ZUAA 3H8CA 3OQCA 3OVZA 4RNAA 1ATKA 3RVXA 2OP3A 3KWZA 1CV8A 1NPZA 4YYRA 2XU1A 1PPPA 1SP4B 2JTCA 4ZTBA 3AI8A 4RF1A 3TMPA 1PPDA 2FQ9A 5CHVA 2DCCA 4ZUXU 4WA6A 3QJ3A 4DMYA 2G7YA 2P86A 3OF9A 3RVVA 4MI7A 4IP3A 4R3DA 5KO3A 3N3GA 1F2AA 1XKGA 2YJCA 3S3QA 1YK7A 1GECE 3MHSA 4CDDB 3BY4A 1MHWA 3D6SA 1AECA 2FUDA 1Q6KA 4MM3B 4BS6A 2G8JA 3MHHA 2DC8A 1KHPA
chains in the Genus database with same CATH topology
3RNVA 4BOUA 3MTVA 3PHXA 1DKIA 3PRMA 4REZA 4BOSA 5JZEA 2BTWB 2FE8A 3E9SA 3W30A 4RF0A 3PRPA 1UKFA 4RKXA 3MP2A 4HXDB 3ZNHA 3TRKA 4M0WA 2J7QA 2Z84A 5EZSA 1PVJA 5EZQA 2J7QC 3W31A 4BOPA 4PT5A 4OW0A 3B21A 4A5UA 4IUMA 3BBAA 2AGAA 2UZJA 3IFUA 3PT2A 1YZBA 3C0RA 2JRIA 3OQCA 5E6JA 4RNAA 4GUAA 4D8IA 2BU3A 3PHWA 2BTWA 4BOZA 2JTCA 3PHUA 4ZTBA 2HWKA 3BB7A 4RF1A 3TMPA 4BOQA 4WURA 4OVZA 3MJ5A 4P16A 4MI7A 2DOSA 4IP3A 4R3DA 4XZXA 5KO3A 3PSEA 3O65A 4D8BA 4D8EA 3BY4A 4MM3B 4OVZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UKF A; 
#chains in the Genus database with same CATH topology
 1PPO A;  3U8E A;  1CSB B;  1KHQ A;  3P5V A;  4P6E A;  5CVM A;  5CVN B;  1GLO A;  3CH3 X;  2PRE A;  4G54 A;  4Q8G A;  3PNR A;  2PNS A;  4REZ A;  4BS5 A;  2XU4 A;  4CDF B;  1ME4 A;  1KXR A;  2FE8 A;  3E9S A;  2R6N A;  1NLJ A;  2O6X A;  2AUX A;  1FH0 A;  5CHT A;  1O0E A;  3RVW A;  1ZIV A;  1SNK A;  3H8B A;  3PDF A;  3MP2 A;  2IBI A;  3HD3 A;  1PAD A;  3DF0 A;  4KLB A;  1F2C A;  1U9W A;  1ICF A;  4M0W A;  3TNX A;  4YVA A;  3H6S A;  2XU3 A;  2NQI A;  4FJC A;  2DJF B;  4XUI A;  2FTD A;  2F1G A;  1PVJ A;  4FK5 A;  1NB3 A;  4YYU A;  2J7Q C;  2ARY A;  2AS8 A;  1POP A;  4HWY A;  4PT5 A;  3MOR A;  3WXG A;  1MDW A;  4IUM A;  4N79 A;  2YJB A;  1PCI A;  2HHN A;  2UZJ A;  2E03 A;  1AYU A;  1YT7 A;  1YZB A;  4PAD A;  3C0R A;  3BPF A;  2YJ8 A;  2HXZ A;  3MTN A;  3PW3 A;  2DCD A;  4YYS A;  1PXV A;  2E01 A;  4D8I A;  2AIM A;  2BDZ A;  3BC3 A;  1KFX L;  5JA7 A;  4BOZ A;  5EF4 A;  4I04 A;  2P0R A;  1MS6 A;  1U5I A;  2E02 A;  4WUR A;  4DMX A;  1NL6 A;  3HHI A;  4MZO A;  1YK8 A;  3N4C A;  4AXL A;  2DOS A;  1U9X A;  4RY2 A;  2BDL A;  4X6I A;  3O1G A;  3OIS A;  1VSN A;  1ZCM A;  4QRX A;  3E1Z B;  2R9C A;  3USV A;  2IPP B;  1U9V A;  4OVZ B;  4P6G A;  1AU0 A;  1IWD A;  1PIP A;  3F75 A;  2CB5 A;  3QSD A;  1ME3 A;  2ATO A;  2OUL A;  3NHE A;  3PRM A;  4BOS A;  1DEU A;  8PCH A;  3GCB A;  3IEJ A;  3ERV A;  3BWK A;  1BQI A;  5K16 A;  1CJL A;  3W30 A;  3IOQ A;  4PI3 A;  1JQP A;  4RKX A;  5F02 A;  2JQG R;  1F2B A;  4QRG A;  2XU5 A;  1THE A;  1EWP A;  2G6D A;  3TRK A;  1NQC A;  2DCA A;  2R9N A;  2Z84 A;  5EZS A;  2DJG B;  4I05 A;  3OF8 A;  2AYN A;  4N4Z A;  1Y08 A;  2FO5 A;  4QRV A;  5EZQ A;  3W31 A;  3IV2 A;  3OVX A;  1TU6 A;  4BOP A;  1AIM A;  1DF0 A;  4OW0 A;  3B21 A;  4XR7 A;  1AU4 A;  4A5U A;  1A6R A;  1MIR A;  1TLO A;  2AGA A;  3IFU A;  2VHS A;  4BPV A;  1PBH A;  1QMY A;  1YVB A;  2DC9 A;  3BCN A;  2FYE A;  3HWN A;  5E6J A;  1NB5 A;  1QDQ A;  1GCB A;  1ITO A;  2PAD A;  3BPM A;  2WBF X;  1PE6 A;  3PHU A;  1U9Q X;  2FRA A;  3BB7 A;  2NQG A;  1CTE A;  4MSX A;  5FPW A;  3P5X A;  2ACT A;  1F29 A;  2GHU A;  4XZX A;  1KFU L;  1YAL A;  3O65 A;  2G8E A;  4D8B A;  2HH5 A;  3I3T A;  7PCK A;  1CQD A;  3KSE A;  3CBJ A;  2Y6E A;  3WXF A;  2F7D A;  3LFY A;  1CB5 A;  2DZZ A;  1GMY A;  3MTV A;  4YYW A;  2H7J A;  1S4V A;  1QOL A;  3IMA A;  1K3B B;  4PP1 A;  5JZE A;  2BTW B;  2FRQ A;  1AU2 A;  4YV8 A;  1AYW A;  4CDE B;  1MEG A;  3LXS A;  3PRP A;  4RF0 A;  3S3R A;  4CZW A;  3K24 A;  1EWL A;  4MZS A;  4HXD B;  5PAD A;  3ZNH A;  4BQV A;  1CVZ A;  2CIO A;  6PAD A;  2GFO A;  3HHA A;  5J94 A;  4OEM A;  3V6E A;  4X6H A;  2JQF R;  2Y5B A;  1MEM A;  4W5C A;  4K7C A;  4X6J A;  2C0Y A;  1AU3 A;  1VJV A;  3P5U A;  2E00 A;  1EWM A;  2FT2 A;  5EGW A;  4PP2 E;  2PBH A;  3B79 A;  2B1N A;  4QH6 A;  2JRI A;  3QT4 A;  5JH3 A;  4YYQ A;  4GUA A;  3H89 A;  2BU3 A;  2R9M A;  3CBK A;  3PHW A;  2BTW A;  1BY8 A;  2YJ9 A;  2NQD B;  1M6D A;  3IUT A;  1TL9 A;  2HWK A;  4BOQ A;  1X9Y A;  3O0U A;  4OVZ A;  3C9E A;  3MJ5 A;  2AUZ A;  3PBH A;  1CPJ A;  4FIP A;  3I06 A;  4P16 A;  4W5B A;  2R9F A;  3PSE A;  4AXM A;  1AYV A;  4D8E A;  2DC6 A;  4CDC B;  3KKU A;  5A24 A;  3RNV A;  4BOU A;  3F5V A;  3IHP A;  1Y4H A;  3V6C A;  4Q8H A;  2DC7 A;  3PHX A;  1QXP A;  2NQA A;  4I07 A;  1BGO A;  4QBB A;  1DKI A;  1CS8 A;  3BOW A;  3P5W A;  4OEL A;  2AVW A;  3N3K A;  2HD5 A;  1EF7 A;  3K9M A;  3KWB X;  2AU1 A;  4W4U A;  1BP4 A;  2DZY A;  1UKF A;  9PAP A;  4N8W A;  1STF E;  1HUC B;  3K8U A;  3CH2 X;  3KFQ A;  2DCB A;  3WXE A;  2J7Q A;  2VHF A;  2R9O A;  1EWO A;  3KW9 A;  2OZ2 A;  2B1M A;  4YYV A;  3H7D A;  3KX1 A;  2YJ2 A;  5CVO B;  2AYO A;  1PPN A;  3BBA A;  4BSQ A;  3M99 A;  2P7U A;  3PT2 A;  3ZUA A;  3H8C A;  3OQC A;  3OVZ A;  4RNA A;  1ATK A;  3RVX A;  2OP3 A;  3KWZ A;  1CV8 A;  1NPZ A;  4YYR A;  2XU1 A;  1PPP A;  1SP4 B;  2JTC A;  4ZTB A;  3AI8 A;  4RF1 A;  3TMP A;  1PPD A;  2FQ9 A;  5CHV A;  2DCC A;  4ZUX U;  4WA6 A;  3QJ3 A;  4DMY A;  2G7Y A;  2P86 A;  3OF9 A;  3RVV A;  4MI7 A;  4IP3 A;  4R3D A;  5KO3 A;  3N3G A;  1F2A A;  1XKG A;  2YJC A;  3S3Q A;  1YK7 A;  1GEC E;  3MHS A;  4CDD B;  3BY4 A;  1MHW A;  3D6S A;  1AEC A;  2FUD A;  1Q6K A;  4MM3 B;  4BS6 A;  2G8J A;  3MHH A;  2DC8 A;  1KHP A; 
#chains in the Genus database with same CATH homology
 3RNV A;  4BOU A;  3MTV A;  3PHX A;  1DKI A;  3PRM A;  4REZ A;  4BOS A;  5JZE A;  2BTW B;  2FE8 A;  3E9S A;  3W30 A;  4RF0 A;  3PRP A;  1UKF A;  4RKX A;  3MP2 A;  4HXD B;  3ZNH A;  3TRK A;  4M0W A;  2J7Q A;  2Z84 A;  5EZS A;  1PVJ A;  5EZQ A;  2J7Q C;  3W31 A;  4BOP A;  4PT5 A;  4OW0 A;  3B21 A;  4A5U A;  4IUM A;  3BBA A;  2AGA A;  2UZJ A;  3IFU A;  3PT2 A;  1YZB A;  3C0R A;  2JRI A;  3OQC A;  5E6J A;  4RNA A;  4GUA A;  4D8I A;  2BU3 A;  3PHW A;  2BTW A;  4BOZ A;  2JTC A;  3PHU A;  4ZTB A;  2HWK A;  3BB7 A;  4RF1 A;  3TMP A;  4BOQ A;  4WUR A;  4OVZ A;  3MJ5 A;  4P16 A;  4MI7 A;  2DOS A;  4IP3 A;  4R3D A;  4XZX A;  5KO3 A;  3PSE A;  3O65 A;  4D8B A;  4D8E A;  3BY4 A;  4MM3 B;  4OVZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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