4A5UA

Turnip yellow mosaic virus proteinase and escherichia coli 30s ribosomal s15
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
148
structure length
148
Chain Sequence
LPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/rna binding protein
source organism Turnip yellow mosaic virus
publication title A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the Otu Family.
pubmed doi rcsb
molecule keywords RNA REPLICASE POLYPROTEIN
total genus 49
structure length 148
sequence length 148
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2011-10-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.100 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4a5uA00
4A5UA
chains in the Genus database with same CATH superfamily
1BY8A 1POPA 1AYWA 2VHFA 3LXSA 2NQIA 1F2BA 3N3KA 4ZTBA 2DCCA 3QT4A 2VHSA 1U9XA 3USVA 3W31A 1PCIA 5KO3A 5JA7A 3KWBX 2R6NA 4N8WA 1CV8A 4PP2E 4X6IA 4BOSA 3CH2X 2F1GA 2G8JA 4BQVA 2DZZA 2B1MA 3HWNA 3H6SA 4BSQA 3HHAA 3I3TA 1NL6A 4YVAA 1QOLA 1S4VA 1ATKA 5J94A 3BWKA 3KWZA 2BTWB 1VSNA 1PPOA 4OVZB 2BTWA 1QMYA 4OVZA 4RY2A 4CDEB 4BOQA 1PADA 4OEMA 4PT5A 3IFUA 3O0UA 5CHVA 1YT7A 2DC8A 1CPJA 3NHEA 3BOWA 3ERVA 1NQCA 1NLJA 3BPFA 3P5UA 4MZSA 1ITOA 1AIMA 1PPPA 2DCAA 1EWMA 3OF8A 1ZIVA 3P5XA 1AU2A 2H7JA 4BOZA 2R9MA 1TLOA 2BDZA 1VJVA 4R3DA 1KHQA 3PNRA 5CVMA 4DMYA 1MIRA 3BCNA 2HD5A 1CVZA 2YJBA 3PRPA 1KFXL 4MM3B 2FRAA 4IUMA 1PE6A 3E1ZB 4X6HA 4AXLA 3DF0A 3IV2A 3W30A 4AXMA 3CBJA 3N4CA 1U9QX 2FYEA 2PBHA 2E01A 1SP4B 2O6XA 3O65A 4I05A 4YYVA 3H7DA 2DJFB 4G54A 4YYQA 1CB5A 9PAPA 1PIPA 2G7YA 2C0YA 1GECE 1NB3A 1GCBA 1PVJA 2BU3A 2FT2A 3PHWA 2OZ2A 3RVVA 1KFUL 1AYVA 2E03A 2R9CA 1KHPA 4CDFB 5A24A 2P0RA 2FE8A 4I04A 1A6RA 1DEUA 3BC3A 4XR7A 3PRMA 2YJ9A 3CH3X 4YYSA 2B1NA 1Q6KA 3OVZA 3IUTA 5CHTA 4Q8HA 2JQFR 3OF9A 2HWKA 5EZSA 4HWYA 1YK8A 2HH5A 1DKIA 5FPWA 1CJLA 1NB5A 8PCHA 1IWDA 3RVWA 3LFYA 2ATOA 2JTCA 4W5BA 4A5UA 3H89A 1EWOA 1ICFA 4RF0A 2PNSA 3P5VA 2DZYA 1STFE 1GLOA 2YJ8A 3C9EA 2AU1A 3MTNA 3MORA 3F5VA 4PP1A 4DMXA 6PADA 1AYUA 3K8UA 3M99A 4RF1A 1U9WA 1MHWA 3WXEA 4D8IA 3PW3A 3K24A 1THEA 3ZUAA 1QXPA 4GUAA 3KKUA 1F29A 2NQDB 4XZXA 3O1GA 5EZQA 2G6DA 3RVXA 4YYUA 1MDWA 2Y5BA 3U8EA 2DJGB 4FJCA 4M0WA 4CDDB 3B21A 2DCDA 2UZJA 4YYRA 1CSBB 2FO5A 1YALA 2AVWA 2XU4A 1PPNA 3S3QA 5JZEA 4MI7A 5CVOB 1YVBA 1PBHA 3BB7A 4FK5A 4OELA 1HUCB 2P7UA 3C0RA 3KW9A 2AUXA 1AU3A 3KX1A 4HXDB 4CZWA 1F2AA 1MEMA 1SNKA 3MHHA 2NQGA 1U5IA 4QRGA 4K7CA 2FRQA 3V6CA 3PHXA 4KLBA 2R9OA 2AUZA 2E00A 1MS6A 2J7QC 2IPPB 4YV8A 1K3BB 4CDCB 1CS8A 2JRIA 1U9VA 1ME3A 4W5CA 4XUIA 3BBAA 4ZUXU 4FIPA 2E02A 3GCBA 2R9NA 4WA6A 5PADA 1O0EA 2XU5A 4IP3A 3TMPA 1AECA 1MEGA 2DC6A 2DCBA 2HHNA 2IBIA 2OULA 4QH6A 3D6SA 4QRXA 1JQPA 1KXRA 1BGOA 2XU1A 3RNVA 4BOPA 3H8BA 1UKFA 2BDLA 3IEJA 4WURA 1AU0A 3V6EA 3PHUA 4N79A 3TRKA 3WXFA 2AS8A 3H8CA 4D8EA 2DC9A 3S3RA 5K16A 1Y4HA 2AYOA 2YJCA 4PADA 5EGWA 1NPZA 5EF4A 1CTEA 4BS6A 4P6EA 4OW0A 1XKGA 2CIOA 2AIMA 2ARYA 7PCKA 3QJ3A 3IHPA 2GFOA 4BS5A 1DF0A 1EWLA 1ME4A 3PT2A 5E6JA 2R9FA 1AU4A 5JH3A 1ZCMA 2G8EA 3B79A 3CBKA 4Q8GA 4REZA 1PXVA 3E9SA 1FH0A 2F7DA 3N3GA 3PBHA 2P86A 4MSXA 1Y08A 2XU3A 4YYWA 4P6GA 5CVNB 3BPMA 3K9MA 1BQIA 3OQCA 1BP4A 4MZOA 2NQAA 2JQGR 2Z84A 3KSEA 4PI3A 2WBFX 4W4UA 1YK7A 1EF7A 3I06A 3OISA 1F2CA 1PPDA 3QSDA 3MTVA 3MHSA 3OVXA 4BPVA 3HHIA 2CB5A 2HXZA 2OP3A 4RNAA 2DC7A 3P5WA 3PSEA 4P16A 2FTDA 2PADA 3IOQA 4I07A 4RKXA 4X6JA 1GMYA 5F02A 3IMAA 3HD3A 3WXGA 2GHUA 3KFQA 4D8BA 2FQ9A 1M6DA 3TNXA 4QRVA 3BY4A 3F75A 3PDFA 4N4ZA 2J7QA 1TL9A 2PREA 3AI8A 1EWPA 4QBBA 3ZNHA 1TU6A 2ACTA 3MJ5A 2YJ2A 2AGAA 2Y6EA 1CQDA 1X9YA 3MP2A 2AYNA 1QDQA 2FUDA 4BOUA 2DOSA 1YZBA
chains in the Genus database with same CATH topology
3O65A 4OW0A 4ZTBA 3W31A 5JZEA 4MI7A 5KO3A 3PT2A 1PVJA 3BB7A 5E6JA 2BU3A 4BOSA 3PHWA 4REZA 3E9SA 3C0RA 2FE8A 3OQCA 4HXDB 2Z84A 3PRMA 2BTWB 4OVZB 2BTWA 4OVZA 4BOQA 4PT5A 2HWKA 3MTVA 3IFUA 3PHXA 5EZSA 1DKIA 2J7QC 4RNAA 3PSEA 4P16A 2JRIA 3BBAA 4RKXA 2JTCA 4A5UA 4RF0A 4IP3A 3TMPA 4D8BA 3BY4A 4BOZA 2J7QA 4RF1A 3ZNHA 4R3DA 3RNVA 4D8IA 4BOPA 1UKFA 4GUAA 3MJ5A 2AGAA 4WURA 3PRPA 3PHUA 3TRKA 4MM3B 4XZXA 5EZQA 4IUMA 3MP2A 4D8EA 4M0WA 3W30A 4BOUA 3B21A 2DOSA 1YZBA 2UZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A5U A; 
#chains in the Genus database with same CATH topology
 1BY8 A;  1POP A;  1AYW A;  2VHF A;  3LXS A;  2NQI A;  1F2B A;  3N3K A;  4ZTB A;  2DCC A;  3QT4 A;  2VHS A;  1U9X A;  3USV A;  3W31 A;  1PCI A;  5KO3 A;  5JA7 A;  3KWB X;  2R6N A;  4N8W A;  1CV8 A;  4PP2 E;  4X6I A;  4BOS A;  3CH2 X;  2F1G A;  2G8J A;  4BQV A;  2DZZ A;  2B1M A;  3HWN A;  3H6S A;  4BSQ A;  3HHA A;  3I3T A;  1NL6 A;  4YVA A;  1QOL A;  1S4V A;  1ATK A;  5J94 A;  3BWK A;  3KWZ A;  2BTW B;  1VSN A;  1PPO A;  4OVZ B;  2BTW A;  1QMY A;  4OVZ A;  4RY2 A;  4CDE B;  4BOQ A;  1PAD A;  4OEM A;  4PT5 A;  3IFU A;  3O0U A;  5CHV A;  1YT7 A;  2DC8 A;  1CPJ A;  3NHE A;  3BOW A;  3ERV A;  1NQC A;  1NLJ A;  3BPF A;  3P5U A;  4MZS A;  1ITO A;  1AIM A;  1PPP A;  2DCA A;  1EWM A;  3OF8 A;  1ZIV A;  3P5X A;  1AU2 A;  2H7J A;  4BOZ A;  2R9M A;  1TLO A;  2BDZ A;  1VJV A;  4R3D A;  1KHQ A;  3PNR A;  5CVM A;  4DMY A;  1MIR A;  3BCN A;  2HD5 A;  1CVZ A;  2YJB A;  3PRP A;  1KFX L;  4MM3 B;  2FRA A;  4IUM A;  1PE6 A;  3E1Z B;  4X6H A;  4AXL A;  3DF0 A;  3IV2 A;  3W30 A;  4AXM A;  3CBJ A;  3N4C A;  1U9Q X;  2FYE A;  2PBH A;  2E01 A;  1SP4 B;  2O6X A;  3O65 A;  4I05 A;  4YYV A;  3H7D A;  2DJF B;  4G54 A;  4YYQ A;  1CB5 A;  9PAP A;  1PIP A;  2G7Y A;  2C0Y A;  1GEC E;  1NB3 A;  1GCB A;  1PVJ A;  2BU3 A;  2FT2 A;  3PHW A;  2OZ2 A;  3RVV A;  1KFU L;  1AYV A;  2E03 A;  2R9C A;  1KHP A;  4CDF B;  5A24 A;  2P0R A;  2FE8 A;  4I04 A;  1A6R A;  1DEU A;  3BC3 A;  4XR7 A;  3PRM A;  2YJ9 A;  3CH3 X;  4YYS A;  2B1N A;  1Q6K A;  3OVZ A;  3IUT A;  5CHT A;  4Q8H A;  2JQF R;  3OF9 A;  2HWK A;  5EZS A;  4HWY A;  1YK8 A;  2HH5 A;  1DKI A;  5FPW A;  1CJL A;  1NB5 A;  8PCH A;  1IWD A;  3RVW A;  3LFY A;  2ATO A;  2JTC A;  4W5B A;  4A5U A;  3H89 A;  1EWO A;  1ICF A;  4RF0 A;  2PNS A;  3P5V A;  2DZY A;  1STF E;  1GLO A;  2YJ8 A;  3C9E A;  2AU1 A;  3MTN A;  3MOR A;  3F5V A;  4PP1 A;  4DMX A;  6PAD A;  1AYU A;  3K8U A;  3M99 A;  4RF1 A;  1U9W A;  1MHW A;  3WXE A;  4D8I A;  3PW3 A;  3K24 A;  1THE A;  3ZUA A;  1QXP A;  4GUA A;  3KKU A;  1F29 A;  2NQD B;  4XZX A;  3O1G A;  5EZQ A;  2G6D A;  3RVX A;  4YYU A;  1MDW A;  2Y5B A;  3U8E A;  2DJG B;  4FJC A;  4M0W A;  4CDD B;  3B21 A;  2DCD A;  2UZJ A;  4YYR A;  1CSB B;  2FO5 A;  1YAL A;  2AVW A;  2XU4 A;  1PPN A;  3S3Q A;  5JZE A;  4MI7 A;  5CVO B;  1YVB A;  1PBH A;  3BB7 A;  4FK5 A;  4OEL A;  1HUC B;  2P7U A;  3C0R A;  3KW9 A;  2AUX A;  1AU3 A;  3KX1 A;  4HXD B;  4CZW A;  1F2A A;  1MEM A;  1SNK A;  3MHH A;  2NQG A;  1U5I A;  4QRG A;  4K7C A;  2FRQ A;  3V6C A;  3PHX A;  4KLB A;  2R9O A;  2AUZ A;  2E00 A;  1MS6 A;  2J7Q C;  2IPP B;  4YV8 A;  1K3B B;  4CDC B;  1CS8 A;  2JRI A;  1U9V A;  1ME3 A;  4W5C A;  4XUI A;  3BBA A;  4ZUX U;  4FIP A;  2E02 A;  3GCB A;  2R9N A;  4WA6 A;  5PAD A;  1O0E A;  2XU5 A;  4IP3 A;  3TMP A;  1AEC A;  1MEG A;  2DC6 A;  2DCB A;  2HHN A;  2IBI A;  2OUL A;  4QH6 A;  3D6S A;  4QRX A;  1JQP A;  1KXR A;  1BGO A;  2XU1 A;  3RNV A;  4BOP A;  3H8B A;  1UKF A;  2BDL A;  3IEJ A;  4WUR A;  1AU0 A;  3V6E A;  3PHU A;  4N79 A;  3TRK A;  3WXF A;  2AS8 A;  3H8C A;  4D8E A;  2DC9 A;  3S3R A;  5K16 A;  1Y4H A;  2AYO A;  2YJC A;  4PAD A;  5EGW A;  1NPZ A;  5EF4 A;  1CTE A;  4BS6 A;  4P6E A;  4OW0 A;  1XKG A;  2CIO A;  2AIM A;  2ARY A;  7PCK A;  3QJ3 A;  3IHP A;  2GFO A;  4BS5 A;  1DF0 A;  1EWL A;  1ME4 A;  3PT2 A;  5E6J A;  2R9F A;  1AU4 A;  5JH3 A;  1ZCM A;  2G8E A;  3B79 A;  3CBK A;  4Q8G A;  4REZ A;  1PXV A;  3E9S A;  1FH0 A;  2F7D A;  3N3G A;  3PBH A;  2P86 A;  4MSX A;  1Y08 A;  2XU3 A;  4YYW A;  4P6G A;  5CVN B;  3BPM A;  3K9M A;  1BQI A;  3OQC A;  1BP4 A;  4MZO A;  2NQA A;  2JQG R;  2Z84 A;  3KSE A;  4PI3 A;  2WBF X;  4W4U A;  1YK7 A;  1EF7 A;  3I06 A;  3OIS A;  1F2C A;  1PPD A;  3QSD A;  3MTV A;  3MHS A;  3OVX A;  4BPV A;  3HHI A;  2CB5 A;  2HXZ A;  2OP3 A;  4RNA A;  2DC7 A;  3P5W A;  3PSE A;  4P16 A;  2FTD A;  2PAD A;  3IOQ A;  4I07 A;  4RKX A;  4X6J A;  1GMY A;  5F02 A;  3IMA A;  3HD3 A;  3WXG A;  2GHU A;  3KFQ A;  4D8B A;  2FQ9 A;  1M6D A;  3TNX A;  4QRV A;  3BY4 A;  3F75 A;  3PDF A;  4N4Z A;  2J7Q A;  1TL9 A;  2PRE A;  3AI8 A;  1EWP A;  4QBB A;  3ZNH A;  1TU6 A;  2ACT A;  3MJ5 A;  2YJ2 A;  2AGA A;  2Y6E A;  1CQD A;  1X9Y A;  3MP2 A;  2AYN A;  1QDQ A;  2FUD A;  4BOU A;  2DOS A;  1YZB A; 
#chains in the Genus database with same CATH homology
 3O65 A;  4OW0 A;  4ZTB A;  3W31 A;  5JZE A;  4MI7 A;  5KO3 A;  3PT2 A;  1PVJ A;  3BB7 A;  5E6J A;  2BU3 A;  4BOS A;  3PHW A;  4REZ A;  3E9S A;  3C0R A;  2FE8 A;  3OQC A;  4HXD B;  2Z84 A;  3PRM A;  2BTW B;  4OVZ B;  2BTW A;  4OVZ A;  4BOQ A;  4PT5 A;  2HWK A;  3MTV A;  3IFU A;  3PHX A;  5EZS A;  1DKI A;  2J7Q C;  4RNA A;  3PSE A;  4P16 A;  2JRI A;  3BBA A;  4RKX A;  2JTC A;  4A5U A;  4RF0 A;  4IP3 A;  3TMP A;  4D8B A;  3BY4 A;  4BOZ A;  2J7Q A;  4RF1 A;  3ZNH A;  4R3D A;  3RNV A;  4D8I A;  4BOP A;  1UKF A;  4GUA A;  3MJ5 A;  2AGA A;  4WUR A;  3PRP A;  3PHU A;  3TRK A;  4MM3 B;  4XZX A;  5EZQ A;  4IUM A;  3MP2 A;  4D8E A;  4M0W A;  3W30 A;  4BOU A;  3B21 A;  2DOS A;  1YZB A;  2UZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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