4A5UA

Turnip yellow mosaic virus proteinase and escherichia coli 30s ribosomal s15
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
148
structure length
148
Chain Sequence
LPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the Otu Family.
pubmed doi rcsb
molecule keywords RNA REPLICASE POLYPROTEIN
source organism Turnip yellow mosaic virus
molecule tags Transferase/rna binding protein
total genus 49
structure length 148
sequence length 148
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2011-10-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.100 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4a5uA00
4A5UA
chains in the Genus database with same CATH superfamily
1TU6A 4N4ZA 3MORA 1NLJA 3P5WA 3PNRA 4CDCB 4BSQA 1GCBA 4OEMA 1AU3A 4YYRA 3RVXA 1AECA 1CJLA 2FO5A 5FPWA 4X6HA 3USVA 4N8WA 1ZCMA 4HWYA 2E02A 1PIPA 1VJVA 1DF0A 4IUMA 4PADA 2HH5A 8PCHA 4HXDB 3CBKA 2B1NA 5JZEA 1EF7A 3AI8A 1PPDA 5EGWA 1Q6KA 2Z84A 1U9QX 3CH3X 2YJ8A 2J7QC 3BC3A 4I07A 4Q8GA 2DJFB 3P5XA 1AU4A 4FIPA 5K16A 2E03A 1VSNA 3BPMA 3QJ3A 2HD5A 4BOQA 3OVZA 4QH6A 3MHHA 4ZUXU 2CIOA 4CDEB 3BWKA 5CHTA 2R6NA 3QT4A 2FT2A 1STFE 3HWNA 3KFQA 2P0RA 4XUIA 3RVVA 1ME4A 1CSBB 1CTEA 1CQDA 1KFXL 4PP2E 2G8EA 1F29A 5CVNB 4BS5A 2DCCA 3P5UA 3H6SA 1ITOA 4PI3A 4ZTBA 3IEJA 2OULA 4P16A 3LXSA 1PE6A 2C0YA 2CB5A 4D8BA 3C0RA 5JH3A 4OVZB 5KO3A 2VHSA 3BCNA 1KXRA 2VHFA 4PP1A 4W4UA 4QBBA 3ZNHA 2GHUA 2JTCA 1ME3A 1PPOA 2ACTA 4YYVA 3LFYA 2E00A 2AIMA 2DC7A 4PT5A 1AU0A 2BDLA 1QOLA 5F02A 1DEUA 4XR7A 1AYUA 2DZYA 1SP4B 2OZ2A 1X9YA 2Y5BA 4I04A 1U5IA 4DMXA 1GECE 3KKUA 1K3BB 4YYWA 5J94A 1YK8A 4MM3B 1F2CA 1PPPA 1FH0A 1HUCB 1TL9A 2WBFX 4BOZA 3H8CA 1MHWA 1CVZA 1YVBA 2ARYA 1ICFA 3PW3A 4M0WA 3HD3A 2AUXA 3KSEA 1ATKA 4X6JA 2PBHA 2YJBA 4R3DA 1PVJA 3PSEA 1Y08A 3I06A 2IBIA 1PPNA 1CS8A 2AVWA 3U8EA 1MDWA 4MZOA 1EWPA 4BOPA 3F5VA 5CVMA 1TLOA 2GFOA 3BBAA 3OF8A 2DCBA 2YJCA 1YT7A 2PADA 1AYWA 2UZJA 2PREA 4P6GA 1GMYA 2DOSA 2HWKA 4CZWA 3TMPA 1MS6A 4W5CA 1KHPA 1AYVA 1AIMA 3KW9A 2XU3A 3B21A 4BS6A 5CVOB 2R9MA 3BOWA 1QMYA 4QRVA 4RY2A 1KFUL 3DF0A 2DCAA 2FTDA 1DKIA 2B1MA 2F1GA 1U9VA 3ZUAA 3IFUA 4K7CA 3M99A 1NL6A 1EWOA 4YVAA 3WXGA 3C9EA 4D8IA 4YV8A 3RNVA 1GLOA 3N3GA 1NB3A 4XZXA 2HHNA 1BGOA 1IWDA 4RF0A 1BQIA 1MEGA 3O1GA 4W5BA 2NQAA 2BU3A 3GCBA 3O0UA 3ERVA 3V6EA 3S3QA 3IOQA 1UKFA 1PCIA 2AS8A 1QXPA 3PHUA 2BTWA 2E01A 3PT2A 4MSXA 3IUTA 2YJ9A 1THEA 5PADA 3N3KA 3HHAA 1NB5A 4G54A 3OF9A 1O0EA 2Y6EA 1SNKA 2XU5A 1AU2A 1YALA 4REZA 4QRXA 3F75A 1PADA 2AUZA 2YJ2A 1EWMA 3PBHA 3BPFA 5JA7A 3OQCA 3W31A 3OVXA 2FYEA 2ATOA 3BY4A 3K8UA 4P6EA 2DC9A 1A6RA 9PAPA 2AGAA 4QRGA 2DJGB 1NQCA 1M6DA 3WXEA 1POPA 4RF1A 2HXZA 4GUAA 2H7JA 1U9WA 2DC8A 3K24A 3CBJA 3MP2A 4AXMA 2AU1A 3PHXA 2JQFR 2NQGA 3E9SA 3MHSA 2DC6A 3H8BA 3IV2A 3KX1A 1KHQA 1Y4HA 3D6SA 2BDZA 1QDQA 3IHPA 1U9XA 3HHIA 3H7DA 4DMYA 4BPVA 2FRQA 3E1ZB 2XU4A 3QSDA 4WA6A 1XKGA 3P5VA 5A24A 3N4CA 2JQGR 1PXVA 2NQDB 3H89A 2PNSA 2F7DA 1S4VA 3TRKA 2G6DA 4MI7A 5EF4A 4BOUA 3TNXA 3PRPA 4IP3A 2P7UA 3MTNA 4BQVA 1CPJA 2J7QA 3O65A 1CV8A 1NPZA 3PRMA 4I05A 4AXLA 3S3RA 1MEMA 5CHVA 1PBHA 2NQIA 3MTVA 2AYOA 2JRIA 1CB5A 4RNAA 1ZIVA 1BP4A 2DZZA 3OISA 3KWZA 4Q8HA 2FRAA 1MIRA 4RKXA 4YYQA 6PADA 5E6JA 2BTWB 2P86A 2FQ9A 3MJ5A 4FK5A 1JQPA 5EZSA 3CH2X 3RVWA 5EZQA 1F2AA 3PDFA 4YYSA 4FJCA 3NHEA 3K9MA 2R9NA 4YYUA 4OVZA 4N79A 2DCDA 2IPPB 4D8EA 2OP3A 3KWBX 4WURA 2G8JA 3PHWA 7PCKA 3WXFA 2FE8A 4CDFB 4OW0A 4CDDB 3I3TA 4MZSA 1BY8A 2R9OA 3W30A 2AYNA 1F2BA 2R9CA 1YZBA 2XU1A 1YK7A 2R9FA 3B79A 4X6IA 2O6XA 3BB7A 4A5UA 1EWLA 4KLBA 4OELA 2FUDA 3IMAA 2G7YA 3V6CA 4BOSA
chains in the Genus database with same CATH topology
2JTCA 3TRKA 4MI7A 1UKFA 4PT5A 4BOUA 3PHUA 2BTWA 3PRPA 4IP3A 3PT2A 2J7QA 3O65A 3PRMA 4MM3B 4REZA 3MTVA 4IUMA 4HXDB 2JRIA 4BOZA 4RNAA 5JZEA 3OQCA 4M0WA 2Z84A 3W31A 2J7QC 3BY4A 4RKXA 4R3DA 1PVJA 3PSEA 5E6JA 2BTWB 2AGAA 3MJ5A 4BOQA 4BOPA 5EZSA 5EZQA 3BBAA 4RF1A 4OVZA 4GUAA 2UZJA 2DOSA 2HWKA 3TMPA 4D8EA 4WURA 3PHWA 3MP2A 3B21A 2FE8A 4OW0A 3PHXA 1DKIA 3IFUA 3E9SA 3W30A 4D8IA 4ZTBA 1YZBA 3RNVA 4P16A 4XZXA 4D8BA 3BB7A 4RF0A 3C0RA 4OVZB 4A5UA 5KO3A 2BU3A 3ZNHA 4BOSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A5U A; 
#chains in the Genus database with same CATH topology
 1TU6 A;  4N4Z A;  3MOR A;  1NLJ A;  3P5W A;  3PNR A;  4CDC B;  4BSQ A;  1GCB A;  4OEM A;  1AU3 A;  4YYR A;  3RVX A;  1AEC A;  1CJL A;  2FO5 A;  5FPW A;  4X6H A;  3USV A;  4N8W A;  1ZCM A;  4HWY A;  2E02 A;  1PIP A;  1VJV A;  1DF0 A;  4IUM A;  4PAD A;  2HH5 A;  8PCH A;  4HXD B;  3CBK A;  2B1N A;  5JZE A;  1EF7 A;  3AI8 A;  1PPD A;  5EGW A;  1Q6K A;  2Z84 A;  1U9Q X;  3CH3 X;  2YJ8 A;  2J7Q C;  3BC3 A;  4I07 A;  4Q8G A;  2DJF B;  3P5X A;  1AU4 A;  4FIP A;  5K16 A;  2E03 A;  1VSN A;  3BPM A;  3QJ3 A;  2HD5 A;  4BOQ A;  3OVZ A;  4QH6 A;  3MHH A;  4ZUX U;  2CIO A;  4CDE B;  3BWK A;  5CHT A;  2R6N A;  3QT4 A;  2FT2 A;  1STF E;  3HWN A;  3KFQ A;  2P0R A;  4XUI A;  3RVV A;  1ME4 A;  1CSB B;  1CTE A;  1CQD A;  1KFX L;  4PP2 E;  2G8E A;  1F29 A;  5CVN B;  4BS5 A;  2DCC A;  3P5U A;  3H6S A;  1ITO A;  4PI3 A;  4ZTB A;  3IEJ A;  2OUL A;  4P16 A;  3LXS A;  1PE6 A;  2C0Y A;  2CB5 A;  4D8B A;  3C0R A;  5JH3 A;  4OVZ B;  5KO3 A;  2VHS A;  3BCN A;  1KXR A;  2VHF A;  4PP1 A;  4W4U A;  4QBB A;  3ZNH A;  2GHU A;  2JTC A;  1ME3 A;  1PPO A;  2ACT A;  4YYV A;  3LFY A;  2E00 A;  2AIM A;  2DC7 A;  4PT5 A;  1AU0 A;  2BDL A;  1QOL A;  5F02 A;  1DEU A;  4XR7 A;  1AYU A;  2DZY A;  1SP4 B;  2OZ2 A;  1X9Y A;  2Y5B A;  4I04 A;  1U5I A;  4DMX A;  1GEC E;  3KKU A;  1K3B B;  4YYW A;  5J94 A;  1YK8 A;  4MM3 B;  1F2C A;  1PPP A;  1FH0 A;  1HUC B;  1TL9 A;  2WBF X;  4BOZ A;  3H8C A;  1MHW A;  1CVZ A;  1YVB A;  2ARY A;  1ICF A;  3PW3 A;  4M0W A;  3HD3 A;  2AUX A;  3KSE A;  1ATK A;  4X6J A;  2PBH A;  2YJB A;  4R3D A;  1PVJ A;  3PSE A;  1Y08 A;  3I06 A;  2IBI A;  1PPN A;  1CS8 A;  2AVW A;  3U8E A;  1MDW A;  4MZO A;  1EWP A;  4BOP A;  3F5V A;  5CVM A;  1TLO A;  2GFO A;  3BBA A;  3OF8 A;  2DCB A;  2YJC A;  1YT7 A;  2PAD A;  1AYW A;  2UZJ A;  2PRE A;  4P6G A;  1GMY A;  2DOS A;  2HWK A;  4CZW A;  3TMP A;  1MS6 A;  4W5C A;  1KHP A;  1AYV A;  1AIM A;  3KW9 A;  2XU3 A;  3B21 A;  4BS6 A;  5CVO B;  2R9M A;  3BOW A;  1QMY A;  4QRV A;  4RY2 A;  1KFU L;  3DF0 A;  2DCA A;  2FTD A;  1DKI A;  2B1M A;  2F1G A;  1U9V A;  3ZUA A;  3IFU A;  4K7C A;  3M99 A;  1NL6 A;  1EWO A;  4YVA A;  3WXG A;  3C9E A;  4D8I A;  4YV8 A;  3RNV A;  1GLO A;  3N3G A;  1NB3 A;  4XZX A;  2HHN A;  1BGO A;  1IWD A;  4RF0 A;  1BQI A;  1MEG A;  3O1G A;  4W5B A;  2NQA A;  2BU3 A;  3GCB A;  3O0U A;  3ERV A;  3V6E A;  3S3Q A;  3IOQ A;  1UKF A;  1PCI A;  2AS8 A;  1QXP A;  3PHU A;  2BTW A;  2E01 A;  3PT2 A;  4MSX A;  3IUT A;  2YJ9 A;  1THE A;  5PAD A;  3N3K A;  3HHA A;  1NB5 A;  4G54 A;  3OF9 A;  1O0E A;  2Y6E A;  1SNK A;  2XU5 A;  1AU2 A;  1YAL A;  4REZ A;  4QRX A;  3F75 A;  1PAD A;  2AUZ A;  2YJ2 A;  1EWM A;  3PBH A;  3BPF A;  5JA7 A;  3OQC A;  3W31 A;  3OVX A;  2FYE A;  2ATO A;  3BY4 A;  3K8U A;  4P6E A;  2DC9 A;  1A6R A;  9PAP A;  2AGA A;  4QRG A;  2DJG B;  1NQC A;  1M6D A;  3WXE A;  1POP A;  4RF1 A;  2HXZ A;  4GUA A;  2H7J A;  1U9W A;  2DC8 A;  3K24 A;  3CBJ A;  3MP2 A;  4AXM A;  2AU1 A;  3PHX A;  2JQF R;  2NQG A;  3E9S A;  3MHS A;  2DC6 A;  3H8B A;  3IV2 A;  3KX1 A;  1KHQ A;  1Y4H A;  3D6S A;  2BDZ A;  1QDQ A;  3IHP A;  1U9X A;  3HHI A;  3H7D A;  4DMY A;  4BPV A;  2FRQ A;  3E1Z B;  2XU4 A;  3QSD A;  4WA6 A;  1XKG A;  3P5V A;  5A24 A;  3N4C A;  2JQG R;  1PXV A;  2NQD B;  3H89 A;  2PNS A;  2F7D A;  1S4V A;  3TRK A;  2G6D A;  4MI7 A;  5EF4 A;  4BOU A;  3TNX A;  3PRP A;  4IP3 A;  2P7U A;  3MTN A;  4BQV A;  1CPJ A;  2J7Q A;  3O65 A;  1CV8 A;  1NPZ A;  3PRM A;  4I05 A;  4AXL A;  3S3R A;  1MEM A;  5CHV A;  1PBH A;  2NQI A;  3MTV A;  2AYO A;  2JRI A;  1CB5 A;  4RNA A;  1ZIV A;  1BP4 A;  2DZZ A;  3OIS A;  3KWZ A;  4Q8H A;  2FRA A;  1MIR A;  4RKX A;  4YYQ A;  6PAD A;  5E6J A;  2BTW B;  2P86 A;  2FQ9 A;  3MJ5 A;  4FK5 A;  1JQP A;  5EZS A;  3CH2 X;  3RVW A;  5EZQ A;  1F2A A;  3PDF A;  4YYS A;  4FJC A;  3NHE A;  3K9M A;  2R9N A;  4YYU A;  4OVZ A;  4N79 A;  2DCD A;  2IPP B;  4D8E A;  2OP3 A;  3KWB X;  4WUR A;  2G8J A;  3PHW A;  7PCK A;  3WXF A;  2FE8 A;  4CDF B;  4OW0 A;  4CDD B;  3I3T A;  4MZS A;  1BY8 A;  2R9O A;  3W30 A;  2AYN A;  1F2B A;  2R9C A;  1YZB A;  2XU1 A;  1YK7 A;  2R9F A;  3B79 A;  4X6I A;  2O6X A;  3BB7 A;  4A5U A;  1EWL A;  4KLB A;  4OEL A;  2FUD A;  3IMA A;  2G7Y A;  3V6C A;  4BOS A; 
#chains in the Genus database with same CATH homology
 2JTC A;  3TRK A;  4MI7 A;  1UKF A;  4PT5 A;  4BOU A;  3PHU A;  2BTW A;  3PRP A;  4IP3 A;  3PT2 A;  2J7Q A;  3O65 A;  3PRM A;  4MM3 B;  4REZ A;  3MTV A;  4IUM A;  4HXD B;  2JRI A;  4BOZ A;  4RNA A;  5JZE A;  3OQC A;  4M0W A;  2Z84 A;  3W31 A;  2J7Q C;  3BY4 A;  4RKX A;  4R3D A;  1PVJ A;  3PSE A;  5E6J A;  2BTW B;  2AGA A;  3MJ5 A;  4BOQ A;  4BOP A;  5EZS A;  5EZQ A;  3BBA A;  4RF1 A;  4OVZ A;  4GUA A;  2UZJ A;  2DOS A;  2HWK A;  3TMP A;  4D8E A;  4WUR A;  3PHW A;  3MP2 A;  3B21 A;  2FE8 A;  4OW0 A;  3PHX A;  1DKI A;  3IFU A;  3E9S A;  3W30 A;  4D8I A;  4ZTB A;  1YZB A;  3RNV A;  4P16 A;  4XZX A;  4D8B A;  3BB7 A;  4RF0 A;  3C0R A;  4OVZ B;  4A5U A;  5KO3 A;  2BU3 A;  3ZNH A;  4BOS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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