4D8IA

High resolution structures of monomeric s. pyogenes speb reveals role of glycine-rich active site loop
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
254
structure length
254
Chain Sequence
QPVVKSLLNSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRSDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Streptopain
publication title Ultrahigh and High Resolution Structures and Mutational Analysis of Monomeric Streptococcus pyogenes SpeB Reveal a Functional Role for the Glycine-rich C-terminal Loop.
pubmed doi rcsb
source organism Streptococcus pyogenes
total genus 81
structure length 254
sequence length 254
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2012-01-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4d8iA00
3BBAA 4D8BA 4D8EA 1DKIA 3BB7A 2UZJA 2JTCA 4RKXA 4D8IA 1PVJA
chains in the Genus database with same CATH superfamily
1YK8A 4PI3A 4QRGA 3MHHA 3MTNA 3BWKA 4OEMA 1SP4B 3KSEA 3KFQA 1AU0A 1CSBB 3BY4A 3U8EA 4MSXA 3O65A 2CB5A 2Y6EA 1X9YA 3LXSA 4N8WA 1GECE 1GLOA 3GCBA 2YJBA 2NQGA 1CV8A 5CVMA 1CB5A 3RVVA 2FYEA 5CVNB 1PXVA 1TU6A 2JRIA 3OF9A 4I04A 1YK7A 3QJ3A 3CBKA 3PDFA 2FQ9A 1ITOA 4CDEB 3PRPA 1PIPA 1Q6KA 2AIMA 3E1ZB 3ZNHA 1KFUL 4K7CA 2DOSA 1NPZA 4P6GA 4R3DA 4YYQA 2YJ2A 3V6CA 3B21A 3TNXA 1PADA 3BCNA 1UKFA 1AIMA 3ERVA 9PAPA 3OISA 3OVZA 4MM3B 4QRVA 1MEMA 4QH6A 4BOPA 3TRKA 1MS6A 3HHIA 1FH0A 4XUIA 3PHXA 4BOQA 2YJ8A 2C0YA 1SNKA 4I05A 2B1NA 3I3TA 4BSQA 3D6SA 2BDLA 4CDDB 3NHEA 4RF1A 4ZTBA 1NLJA 3K9MA 5KO3A 5CVOB 2E00A 1EF7A 1ZCMA 4YYUA 2E03A 4HWYA 2R9MA 4RNAA 3RNVA 4M0WA 4X6HA 2IBIA 4CZWA 1Y08A 2DJGB 3K8UA 3KW9A 5EGWA 2B1MA 3PHUA 1Y4HA 5EF4A 2XU5A 2R9CA 1YZBA 1KHQA 2AVWA 3H6SA 1NQCA 2FRQA 1M6DA 3IFUA 1F2AA 2FTDA 1AECA 1CPJA 2G8JA 1KFXL 1QMYA 2AUZA 3BB7A 5CHTA 3P5UA 4YV8A 4ZUXU 3IV2A 4YVAA 2FT2A 4CDCB 3MHSA 3BPMA 4OVZB 3RVXA 2DCBA 3QT4A 2F1GA 4IUMA 2OULA 4AXLA 4YYWA 2AUXA 4BS6A 2DZZA 3USVA 2G7YA 2UZJA 3CH2X 4P16A 1EWPA 1A6RA 4XZXA 2GHUA 1PVJA 1DKIA 4YYSA 2DJFB 4MI7A 1ICFA 4D8EA 3BC3A 1K3BB 5K16A 2AS8A 4RY2A 1ZIVA 1QOLA 3BOWA 3O1GA 8PCHA 3E9SA 6PADA 2BTWB 1AU4A 4REZA 4MZSA 4BOZA 2VHSA 3MORA 2OZ2A 4RF0A 3LFYA 1MIRA 4BOUA 3N3KA 1MEGA 2CIOA 1U9XA 1PCIA 4AXMA 4Q8GA 4A5UA 3HD3A 3PBHA 3C0RA 1KHPA 3AI8A 2E02A 2BDZA 2O6XA 2ACTA 4Q8HA 1NB5A 2ARYA 3CBJA 1GMYA 3WXFA 1CQDA 4FK5A 4XR7A 2XU1A 4RKXA 3K24A 4PADA 5EZQA 2FRAA 3H8BA 3P5XA 3PHWA 4CDFB 3IHPA 5F02A 2FE8A 1PPOA 2HH5A 1TLOA 4BPVA 2FO5A 1U9WA 3MP2A 2P0RA 2DC9A 2IPPB 3H8CA 3IOQA 1STFE 3BPFA 4GUAA 3RVWA 1PPDA 2F7DA 4D8IA 1POPA 4PP2E 4PP1A 3W30A 2BU3A 2AYNA 2PBHA 1BGOA 2NQDB 1HUCB 1EWOA 4QRXA 5CHVA 1NB3A 3IEJA 2VHFA 1U9VA 1GCBA 2DCDA 4FIPA 5E6JA 1BY8A 1U9QX 1CTEA 4YYVA 3CH3X 3S3RA 1PE6A 3WXGA 1PPNA 2Y5BA 3P5VA 4OELA 2HXZA 3V6EA 1YVBA 1EWLA 5FPWA 1AYUA 4N4ZA 1S4VA 4N79A 5JA7A 1THEA 1TL9A 1O0EA 4WA6A 2PNSA 3IUTA 1AU3A 4WURA 2JQFR 3OF8A 1DF0A 1BP4A 2YJCA 3ZUAA 4OVZA 2R6NA 4IP3A 2YJ9A 1CJLA 4FJCA 5EZSA 3KWZA 3MJ5A 2R9FA 1JQPA 2GFOA 3H7DA 4G54A 4BOSA 1EWMA 3H89A 3I06A 2HWKA 3DF0A 2NQAA 3KKUA 1DEUA 4YYRA 3KWBX 7PCKA 1PPPA 4P6EA 4QBBA 1VJVA 2XU4A 2ATOA 1VSNA 2DC7A 3F75A 2DC8A 1YALA 1CS8A 1XKGA 1ME4A 3PNRA 4HXDB 2HD5A 2WBFX 3HHAA 3PW3A 3S3QA 2R9OA 4MZOA 4DMYA 1MDWA 2BTWA 1ME3A 4W5CA 4I07A 3PRMA 2DC6A 3W31A 5A24A 3MTVA 2PADA 2R9NA 1AYVA 3BBAA 1NL6A 3WXEA 2JQGR 1QDQA 1AYWA 2P7UA 1QXPA 2NQIA 1AU2A 4KLBA 3B79A 3N3GA 2PREA 4DMXA 3HWNA 5PADA 3C9EA 4X6IA 4W5BA 4W4UA 2FUDA 2JTCA 1F2BA 2HHNA 4PT5A 2G8EA 4X6JA 3KX1A 5JH3A 1IWDA 1MHWA 2OP3A 2E01A 2J7QA 2AGAA 3N4CA 2G6DA 3O0UA 1BQIA 1U5IA 2J7QC 1ATKA 4BQVA 1KXRA 1YT7A 2DCAA 5J94A 3TMPA 4OW0A 3PT2A 3OQCA 2H7JA 1F29A 2AU1A 1CVZA 4D8BA 2P86A 3PSEA 4BS5A 3IMAA 2DCCA 2Z84A 5JZEA 3F5VA 2XU3A 2AYOA 3QSDA 3P5WA 2DZYA 3OVXA 1F2CA 1PBHA 3M99A
chains in the Genus database with same CATH topology
5EZQA 3PHWA 3PHUA 2FE8A 4HXDB 1YZBA 3BY4A 3O65A 3IFUA 3MP2A 2BTWA 4GUAA 3BB7A 4D8IA 3PRMA 2JRIA 3W30A 2BU3A 3W31A 3MTVA 4OVZB 3BBAA 4IUMA 3PRPA 5E6JA 3ZNHA 2UZJA 4P16A 4XZXA 2DOSA 4R3DA 1PVJA 1DKIA 3B21A 2JTCA 4MI7A 4D8EA 1UKFA 4PT5A 4MM3B 2J7QA 2AGAA 4WURA 4BOPA 3E9SA 2BTWB 4REZA 2J7QC 4BOZA 3TRKA 4RF0A 4OVZA 3TMPA 4IP3A 4OW0A 4BOUA 3PT2A 3OQCA 3PHXA 5EZSA 4BOQA 3MJ5A 4A5UA 4D8BA 3PSEA 3C0RA 4BOSA 2HWKA 5JZEA 2Z84A 4RF1A 4ZTBA 5KO3A 4RNAA 4RKXA 3RNVA 4M0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBA A;  4D8B A;  4D8E A;  1DKI A;  3BB7 A;  2UZJ A;  2JTC A;  4RKX A;  4D8I A;  1PVJ A; 
#chains in the Genus database with same CATH topology
 1YK8 A;  4PI3 A;  4QRG A;  3MHH A;  3MTN A;  3BWK A;  4OEM A;  1SP4 B;  3KSE A;  3KFQ A;  1AU0 A;  1CSB B;  3BY4 A;  3U8E A;  4MSX A;  3O65 A;  2CB5 A;  2Y6E A;  1X9Y A;  3LXS A;  4N8W A;  1GEC E;  1GLO A;  3GCB A;  2YJB A;  2NQG A;  1CV8 A;  5CVM A;  1CB5 A;  3RVV A;  2FYE A;  5CVN B;  1PXV A;  1TU6 A;  2JRI A;  3OF9 A;  4I04 A;  1YK7 A;  3QJ3 A;  3CBK A;  3PDF A;  2FQ9 A;  1ITO A;  4CDE B;  3PRP A;  1PIP A;  1Q6K A;  2AIM A;  3E1Z B;  3ZNH A;  1KFU L;  4K7C A;  2DOS A;  1NPZ A;  4P6G A;  4R3D A;  4YYQ A;  2YJ2 A;  3V6C A;  3B21 A;  3TNX A;  1PAD A;  3BCN A;  1UKF A;  1AIM A;  3ERV A;  9PAP A;  3OIS A;  3OVZ A;  4MM3 B;  4QRV A;  1MEM A;  4QH6 A;  4BOP A;  3TRK A;  1MS6 A;  3HHI A;  1FH0 A;  4XUI A;  3PHX A;  4BOQ A;  2YJ8 A;  2C0Y A;  1SNK A;  4I05 A;  2B1N A;  3I3T A;  4BSQ A;  3D6S A;  2BDL A;  4CDD B;  3NHE A;  4RF1 A;  4ZTB A;  1NLJ A;  3K9M A;  5KO3 A;  5CVO B;  2E00 A;  1EF7 A;  1ZCM A;  4YYU A;  2E03 A;  4HWY A;  2R9M A;  4RNA A;  3RNV A;  4M0W A;  4X6H A;  2IBI A;  4CZW A;  1Y08 A;  2DJG B;  3K8U A;  3KW9 A;  5EGW A;  2B1M A;  3PHU A;  1Y4H A;  5EF4 A;  2XU5 A;  2R9C A;  1YZB A;  1KHQ A;  2AVW A;  3H6S A;  1NQC A;  2FRQ A;  1M6D A;  3IFU A;  1F2A A;  2FTD A;  1AEC A;  1CPJ A;  2G8J A;  1KFX L;  1QMY A;  2AUZ A;  3BB7 A;  5CHT A;  3P5U A;  4YV8 A;  4ZUX U;  3IV2 A;  4YVA A;  2FT2 A;  4CDC B;  3MHS A;  3BPM A;  4OVZ B;  3RVX A;  2DCB A;  3QT4 A;  2F1G A;  4IUM A;  2OUL A;  4AXL A;  4YYW A;  2AUX A;  4BS6 A;  2DZZ A;  3USV A;  2G7Y A;  2UZJ A;  3CH2 X;  4P16 A;  1EWP A;  1A6R A;  4XZX A;  2GHU A;  1PVJ A;  1DKI A;  4YYS A;  2DJF B;  4MI7 A;  1ICF A;  4D8E A;  3BC3 A;  1K3B B;  5K16 A;  2AS8 A;  4RY2 A;  1ZIV A;  1QOL A;  3BOW A;  3O1G A;  8PCH A;  3E9S A;  6PAD A;  2BTW B;  1AU4 A;  4REZ A;  4MZS A;  4BOZ A;  2VHS A;  3MOR A;  2OZ2 A;  4RF0 A;  3LFY A;  1MIR A;  4BOU A;  3N3K A;  1MEG A;  2CIO A;  1U9X A;  1PCI A;  4AXM A;  4Q8G A;  4A5U A;  3HD3 A;  3PBH A;  3C0R A;  1KHP A;  3AI8 A;  2E02 A;  2BDZ A;  2O6X A;  2ACT A;  4Q8H A;  1NB5 A;  2ARY A;  3CBJ A;  1GMY A;  3WXF A;  1CQD A;  4FK5 A;  4XR7 A;  2XU1 A;  4RKX A;  3K24 A;  4PAD A;  5EZQ A;  2FRA A;  3H8B A;  3P5X A;  3PHW A;  4CDF B;  3IHP A;  5F02 A;  2FE8 A;  1PPO A;  2HH5 A;  1TLO A;  4BPV A;  2FO5 A;  1U9W A;  3MP2 A;  2P0R A;  2DC9 A;  2IPP B;  3H8C A;  3IOQ A;  1STF E;  3BPF A;  4GUA A;  3RVW A;  1PPD A;  2F7D A;  4D8I A;  1POP A;  4PP2 E;  4PP1 A;  3W30 A;  2BU3 A;  2AYN A;  2PBH A;  1BGO A;  2NQD B;  1HUC B;  1EWO A;  4QRX A;  5CHV A;  1NB3 A;  3IEJ A;  2VHF A;  1U9V A;  1GCB A;  2DCD A;  4FIP A;  5E6J A;  1BY8 A;  1U9Q X;  1CTE A;  4YYV A;  3CH3 X;  3S3R A;  1PE6 A;  3WXG A;  1PPN A;  2Y5B A;  3P5V A;  4OEL A;  2HXZ A;  3V6E A;  1YVB A;  1EWL A;  5FPW A;  1AYU A;  4N4Z A;  1S4V A;  4N79 A;  5JA7 A;  1THE A;  1TL9 A;  1O0E A;  4WA6 A;  2PNS A;  3IUT A;  1AU3 A;  4WUR A;  2JQF R;  3OF8 A;  1DF0 A;  1BP4 A;  2YJC A;  3ZUA A;  4OVZ A;  2R6N A;  4IP3 A;  2YJ9 A;  1CJL A;  4FJC A;  5EZS A;  3KWZ A;  3MJ5 A;  2R9F A;  1JQP A;  2GFO A;  3H7D A;  4G54 A;  4BOS A;  1EWM A;  3H89 A;  3I06 A;  2HWK A;  3DF0 A;  2NQA A;  3KKU A;  1DEU A;  4YYR A;  3KWB X;  7PCK A;  1PPP A;  4P6E A;  4QBB A;  1VJV A;  2XU4 A;  2ATO A;  1VSN A;  2DC7 A;  3F75 A;  2DC8 A;  1YAL A;  1CS8 A;  1XKG A;  1ME4 A;  3PNR A;  4HXD B;  2HD5 A;  2WBF X;  3HHA A;  3PW3 A;  3S3Q A;  2R9O A;  4MZO A;  4DMY A;  1MDW A;  2BTW A;  1ME3 A;  4W5C A;  4I07 A;  3PRM A;  2DC6 A;  3W31 A;  5A24 A;  3MTV A;  2PAD A;  2R9N A;  1AYV A;  3BBA A;  1NL6 A;  3WXE A;  2JQG R;  1QDQ A;  1AYW A;  2P7U A;  1QXP A;  2NQI A;  1AU2 A;  4KLB A;  3B79 A;  3N3G A;  2PRE A;  4DMX A;  3HWN A;  5PAD A;  3C9E A;  4X6I A;  4W5B A;  4W4U A;  2FUD A;  2JTC A;  1F2B A;  2HHN A;  4PT5 A;  2G8E A;  4X6J A;  3KX1 A;  5JH3 A;  1IWD A;  1MHW A;  2OP3 A;  2E01 A;  2J7Q A;  2AGA A;  3N4C A;  2G6D A;  3O0U A;  1BQI A;  1U5I A;  2J7Q C;  1ATK A;  4BQV A;  1KXR A;  1YT7 A;  2DCA A;  5J94 A;  3TMP A;  4OW0 A;  3PT2 A;  3OQC A;  2H7J A;  1F29 A;  2AU1 A;  1CVZ A;  4D8B A;  2P86 A;  3PSE A;  4BS5 A;  3IMA A;  2DCC A;  2Z84 A;  5JZE A;  3F5V A;  2XU3 A;  2AYO A;  3QSD A;  3P5W A;  2DZY A;  3OVX A;  1F2C A;  1PBH A;  3M99 A; 
#chains in the Genus database with same CATH homology
 5EZQ A;  3PHW A;  3PHU A;  2FE8 A;  4HXD B;  1YZB A;  3BY4 A;  3O65 A;  3IFU A;  3MP2 A;  2BTW A;  4GUA A;  3BB7 A;  4D8I A;  3PRM A;  2JRI A;  3W30 A;  2BU3 A;  3W31 A;  3MTV A;  4OVZ B;  3BBA A;  4IUM A;  3PRP A;  5E6J A;  3ZNH A;  2UZJ A;  4P16 A;  4XZX A;  2DOS A;  4R3D A;  1PVJ A;  1DKI A;  3B21 A;  2JTC A;  4MI7 A;  4D8E A;  1UKF A;  4PT5 A;  4MM3 B;  2J7Q A;  2AGA A;  4WUR A;  4BOP A;  3E9S A;  2BTW B;  4REZ A;  2J7Q C;  4BOZ A;  3TRK A;  4RF0 A;  4OVZ A;  3TMP A;  4IP3 A;  4OW0 A;  4BOU A;  3PT2 A;  3OQC A;  3PHX A;  5EZS A;  4BOQ A;  3MJ5 A;  4A5U A;  4D8B A;  3PSE A;  3C0R A;  4BOS A;  2HWK A;  5JZE A;  2Z84 A;  4RF1 A;  4ZTB A;  5KO3 A;  4RNA A;  4RKX A;  3RNV A;  4M0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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