2UZJA

Crystal structure of the mature streptococcal cysteine protease, mspeb
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
253
structure length
249
Chain Sequence
QPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRSDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGAGGFNGYQSAVVGIKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords STREPTOPAIN
publication title Structure of the Mature Streptococcal Cysteine Protease Exotoxin Mspeb in its Active Dimeric Form.
pubmed doi rcsb
total genus 79
structure length 249
sequence length 253
chains with identical sequence B
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2008-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2uzjA00
3BBAA 2JTCA 1DKIA 4RKXA 4D8BA 4D8IA 1PVJA 4D8EA 2UZJA 3BB7A
chains in the Genus database with same CATH superfamily
1EF7A 1EWPA 3PHWA 4M0WA 4A5UA 2HHNA 1MDWA 1EWMA 3BY4A 2JQGR 2FUDA 2E03A 3WXEA 4DMYA 3U8EA 2NQGA 3OVXA 2JRIA 1PE6A 1PPPA 5EGWA 1SP4B 2DC6A 1TU6A 3KSEA 3MHHA 3WXFA 2R6NA 4QRGA 3PT2A 2YJ8A 2FTDA 2BDZA 3CH3X 1U9XA 2XU3A 7PCKA 4YVAA 3RNVA 1MHWA 2P86A 2HWKA 4MI7A 4N8WA 3S3RA 2DC7A 2XU1A 1JQPA 4FIPA 4GUAA 1EWLA 4QH6A 2BTWA 5JH3A 4HWYA 1IWDA 4CDDB 4Q8HA 1O0EA 3BPMA 3QT4A 2R9NA 1AYVA 1ME4A 5K16A 4W5CA 4FJCA 1CTEA 2AYOA 2DZYA 4AXMA 4Q8GA 4P6EA 4RF0A 3W30A 2AYNA 1U5IA 2P7UA 2YJ9A 3ERVA 3BPFA 2E02A 4RNAA 3KWZA 1CS8A 5CHTA 2ARYA 4AXLA 1QXPA 5CVMA 3H8BA 4BSQA 2ATOA 2OP3A 2B1MA 1KHPA 2AS8A 4BOUA 4P6GA 4YYRA 1NQCA 1EWOA 4KLBA 5CVNB 4MZOA 3TRKA 4CDEB 1YK8A 3TNXA 3CBKA 4MM3B 1HUCB 1KFXL 2PREA 1MS6A 1AU0A 3PDFA 3K24A 3F75A 1VJVA 6PADA 1NPZA 3KKUA 2HXZA 3OF9A 1MIRA 2DJFB 2F1GA 2YJCA 1CPJA 2BDLA 4XR7A 2J7QA 2G8EA 3IEJA 1ZCMA 4MZSA 4OVZB 4IUMA 2FE8A 4PADA 3RVVA 2UZJA 2JTCA 5JA7A 1F29A 4PI3A 1BP4A 2XU5A 4CZWA 3DF0A 1SNKA 4RY2A 2DZZA 2YJBA 4WURA 1AU3A 4BOQA 3V6EA 3LXSA 4YYUA 1FH0A 1BY8A 3AI8A 1CB5A 2VHSA 3W31A 3P5VA 2Y5BA 3E1ZB 4RF1A 3H6SA 1GLOA 3PBHA 1Q6KA 1BQIA 4ZTBA 2AU1A 2F7DA 3MJ5A 2R9CA 2H7JA 3OF8A 4IP3A 2FO5A 2DCCA 2FT2A 1MEGA 5PADA 4YYWA 1KFUL 4YYVA 2P0RA 2R9MA 3PHUA 4XZXA 3P5WA 1TL9A 2WBFX 1AYUA 2ACTA 1YVBA 1PPDA 1NB3A 3MHSA 1AIMA 5FPWA 4BQVA 4XUIA 3I3TA 2DCDA 1VSNA 2C0YA 2OZ2A 1AU4A 1PVJA 2AVWA 3MORA 1MEMA 1CQDA 4REZA 3B21A 5KO3A 4BS6A 1NL6A 4WA6A 3P5UA 1GMYA 2HH5A 1UKFA 2NQAA 3OVZA 4OEMA 3H89A 1ZIVA 4X6JA 1YALA 4OW0A 3PHXA 4D8EA 4OVZA 4BPVA 2XU4A 3F5VA 1XKGA 4X6IA 3KFQA 3WXGA 1YK7A 3O0UA 9PAPA 4I04A 3PNRA 3N3GA 2DCBA 2AUZA 1TLOA 1S4VA 4QBBA 2G6DA 1NLJA 1Y4HA 1ATKA 3B79A 3PW3A 2OULA 1QMYA 1STFE 2IBIA 3GCBA 3BC3A 3IOQA 5EZQA 4N4ZA 3MTVA 4X6HA 3PRPA 3NHEA 1DEUA 8PCHA 3QSDA 4FK5A 5CHVA 3ZUAA 1PIPA 2E01A 3HD3A 3RVWA 1CV8A 3KX1A 1M6DA 4N79A 4P16A 3I06A 3BCNA 1U9VA 3BB7A 2O6XA 4PT5A 1QDQA 1PXVA 4QRXA 1PBHA 4QRVA 2IPPB 2R9FA 3ZNHA 4MSXA 3LFYA 3BOWA 2GFOA 3KW9A 2DJGB 1GECE 5J94A 4BOPA 2PNSA 2AGAA 4ZUXU 3USVA 1DKIA 4RKXA 1X9YA 2PBHA 1ITOA 3OISA 3V6CA 3KWBX 4CDCB 4BOZA 2R9OA 2Z84A 5EZSA 2FQ9A 2G8JA 2JQFR 3MP2A 2DCAA 1AU2A 2CIOA 3HHIA 3P5XA 1POPA 4YV8A 2AIMA 1PADA 3BBAA 1PCIA 4CDFB 1BGOA 2DC9A 2YJ2A 5CVOB 3RVXA 2DOSA 2J7QC 3CBJA 2B1NA 1AECA 2FRAA 5F02A 3N3KA 2BU3A 1PPNA 4PP1A 2CB5A 1K3BB 4HXDB 3H7DA 4W4UA 3HHAA 2FRQA 2DC8A 1CJLA 4BOSA 3MTNA 3N4CA 1U9QX 4G54A 4YYQA 3K9MA 3C0RA 3S3QA 3C9EA 1CSBB 2G7YA 4OELA 1PPOA 1F2AA 4W5BA 2GHUA 2BTWB 1THEA 1ME3A 3H8CA 4I05A 1U9WA 3HWNA 1CVZA 3CH2X 1AYWA 2VHFA 1F2BA 5JZEA 3IFUA 1KXRA 3O1GA 3E9SA 2AUXA 1YZBA 1DF0A 4I07A 3IV2A 3O65A 3IMAA 4DMXA 3IHPA 2NQDB 2E00A 3K8UA 1QOLA 2NQIA 3QJ3A 4D8BA 4R3DA 2FYEA 1NB5A 2PADA 1YT7A 2Y6EA 3PSEA 5E6JA 3PRMA 4D8IA 1GCBA 3OQCA 3D6SA 5EF4A 1A6RA 1Y08A 5A24A 4K7CA 1F2CA 4PP2E 4BS5A 4YYSA 1KHQA 2HD5A 3BWKA 3TMPA 1ICFA 3M99A 3IUTA
chains in the Genus database with same CATH topology
3PHWA 4BOZA 2Z84A 4M0WA 5EZSA 4A5UA 4REZA 3B21A 5KO3A 3MP2A 3BY4A 2J7QA 3BBAA 2JRIA 1UKFA 2DOSA 2J7QC 4OVZB 4IUMA 4OW0A 2FE8A 3PHXA 2BU3A 4D8EA 2UZJA 4OVZA 3PT2A 2JTCA 4HXDB 3RNVA 4BOSA 3C0RA 4WURA 2HWKA 4MI7A 4BOQA 5EZQA 3MTVA 3PRPA 2BTWB 3W31A 4GUAA 2BTWA 4RF1A 4ZTBA 5JZEA 3IFUA 3E9SA 3MJ5A 1YZBA 3O65A 4IP3A 4P16A 3BB7A 4PT5A 4RF0A 4D8BA 4R3DA 3W30A 3ZNHA 4RNAA 3PHUA 4XZXA 3PSEA 5E6JA 3PRMA 4D8IA 3OQCA 4BOPA 4BOUA 2AGAA 3TRKA 1DKIA 4RKXA 3TMPA 1PVJA 4MM3B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBA A;  2JTC A;  1DKI A;  4RKX A;  4D8B A;  4D8I A;  1PVJ A;  4D8E A;  2UZJ A;  3BB7 A; 
#chains in the Genus database with same CATH topology
 1EF7 A;  1EWP A;  3PHW A;  4M0W A;  4A5U A;  2HHN A;  1MDW A;  1EWM A;  3BY4 A;  2JQG R;  2FUD A;  2E03 A;  3WXE A;  4DMY A;  3U8E A;  2NQG A;  3OVX A;  2JRI A;  1PE6 A;  1PPP A;  5EGW A;  1SP4 B;  2DC6 A;  1TU6 A;  3KSE A;  3MHH A;  3WXF A;  2R6N A;  4QRG A;  3PT2 A;  2YJ8 A;  2FTD A;  2BDZ A;  3CH3 X;  1U9X A;  2XU3 A;  7PCK A;  4YVA A;  3RNV A;  1MHW A;  2P86 A;  2HWK A;  4MI7 A;  4N8W A;  3S3R A;  2DC7 A;  2XU1 A;  1JQP A;  4FIP A;  4GUA A;  1EWL A;  4QH6 A;  2BTW A;  5JH3 A;  4HWY A;  1IWD A;  4CDD B;  4Q8H A;  1O0E A;  3BPM A;  3QT4 A;  2R9N A;  1AYV A;  1ME4 A;  5K16 A;  4W5C A;  4FJC A;  1CTE A;  2AYO A;  2DZY A;  4AXM A;  4Q8G A;  4P6E A;  4RF0 A;  3W30 A;  2AYN A;  1U5I A;  2P7U A;  2YJ9 A;  3ERV A;  3BPF A;  2E02 A;  4RNA A;  3KWZ A;  1CS8 A;  5CHT A;  2ARY A;  4AXL A;  1QXP A;  5CVM A;  3H8B A;  4BSQ A;  2ATO A;  2OP3 A;  2B1M A;  1KHP A;  2AS8 A;  4BOU A;  4P6G A;  4YYR A;  1NQC A;  1EWO A;  4KLB A;  5CVN B;  4MZO A;  3TRK A;  4CDE B;  1YK8 A;  3TNX A;  3CBK A;  4MM3 B;  1HUC B;  1KFX L;  2PRE A;  1MS6 A;  1AU0 A;  3PDF A;  3K24 A;  3F75 A;  1VJV A;  6PAD A;  1NPZ A;  3KKU A;  2HXZ A;  3OF9 A;  1MIR A;  2DJF B;  2F1G A;  2YJC A;  1CPJ A;  2BDL A;  4XR7 A;  2J7Q A;  2G8E A;  3IEJ A;  1ZCM A;  4MZS A;  4OVZ B;  4IUM A;  2FE8 A;  4PAD A;  3RVV A;  2UZJ A;  2JTC A;  5JA7 A;  1F29 A;  4PI3 A;  1BP4 A;  2XU5 A;  4CZW A;  3DF0 A;  1SNK A;  4RY2 A;  2DZZ A;  2YJB A;  4WUR A;  1AU3 A;  4BOQ A;  3V6E A;  3LXS A;  4YYU A;  1FH0 A;  1BY8 A;  3AI8 A;  1CB5 A;  2VHS A;  3W31 A;  3P5V A;  2Y5B A;  3E1Z B;  4RF1 A;  3H6S A;  1GLO A;  3PBH A;  1Q6K A;  1BQI A;  4ZTB A;  2AU1 A;  2F7D A;  3MJ5 A;  2R9C A;  2H7J A;  3OF8 A;  4IP3 A;  2FO5 A;  2DCC A;  2FT2 A;  1MEG A;  5PAD A;  4YYW A;  1KFU L;  4YYV A;  2P0R A;  2R9M A;  3PHU A;  4XZX A;  3P5W A;  1TL9 A;  2WBF X;  1AYU A;  2ACT A;  1YVB A;  1PPD A;  1NB3 A;  3MHS A;  1AIM A;  5FPW A;  4BQV A;  4XUI A;  3I3T A;  2DCD A;  1VSN A;  2C0Y A;  2OZ2 A;  1AU4 A;  1PVJ A;  2AVW A;  3MOR A;  1MEM A;  1CQD A;  4REZ A;  3B21 A;  5KO3 A;  4BS6 A;  1NL6 A;  4WA6 A;  3P5U A;  1GMY A;  2HH5 A;  1UKF A;  2NQA A;  3OVZ A;  4OEM A;  3H89 A;  1ZIV A;  4X6J A;  1YAL A;  4OW0 A;  3PHX A;  4D8E A;  4OVZ A;  4BPV A;  2XU4 A;  3F5V A;  1XKG A;  4X6I A;  3KFQ A;  3WXG A;  1YK7 A;  3O0U A;  9PAP A;  4I04 A;  3PNR A;  3N3G A;  2DCB A;  2AUZ A;  1TLO A;  1S4V A;  4QBB A;  2G6D A;  1NLJ A;  1Y4H A;  1ATK A;  3B79 A;  3PW3 A;  2OUL A;  1QMY A;  1STF E;  2IBI A;  3GCB A;  3BC3 A;  3IOQ A;  5EZQ A;  4N4Z A;  3MTV A;  4X6H A;  3PRP A;  3NHE A;  1DEU A;  8PCH A;  3QSD A;  4FK5 A;  5CHV A;  3ZUA A;  1PIP A;  2E01 A;  3HD3 A;  3RVW A;  1CV8 A;  3KX1 A;  1M6D A;  4N79 A;  4P16 A;  3I06 A;  3BCN A;  1U9V A;  3BB7 A;  2O6X A;  4PT5 A;  1QDQ A;  1PXV A;  4QRX A;  1PBH A;  4QRV A;  2IPP B;  2R9F A;  3ZNH A;  4MSX A;  3LFY A;  3BOW A;  2GFO A;  3KW9 A;  2DJG B;  1GEC E;  5J94 A;  4BOP A;  2PNS A;  2AGA A;  4ZUX U;  3USV A;  1DKI A;  4RKX A;  1X9Y A;  2PBH A;  1ITO A;  3OIS A;  3V6C A;  3KWB X;  4CDC B;  4BOZ A;  2R9O A;  2Z84 A;  5EZS A;  2FQ9 A;  2G8J A;  2JQF R;  3MP2 A;  2DCA A;  1AU2 A;  2CIO A;  3HHI A;  3P5X A;  1POP A;  4YV8 A;  2AIM A;  1PAD A;  3BBA A;  1PCI A;  4CDF B;  1BGO A;  2DC9 A;  2YJ2 A;  5CVO B;  3RVX A;  2DOS A;  2J7Q C;  3CBJ A;  2B1N A;  1AEC A;  2FRA A;  5F02 A;  3N3K A;  2BU3 A;  1PPN A;  4PP1 A;  2CB5 A;  1K3B B;  4HXD B;  3H7D A;  4W4U A;  3HHA A;  2FRQ A;  2DC8 A;  1CJL A;  4BOS A;  3MTN A;  3N4C A;  1U9Q X;  4G54 A;  4YYQ A;  3K9M A;  3C0R A;  3S3Q A;  3C9E A;  1CSB B;  2G7Y A;  4OEL A;  1PPO A;  1F2A A;  4W5B A;  2GHU A;  2BTW B;  1THE A;  1ME3 A;  3H8C A;  4I05 A;  1U9W A;  3HWN A;  1CVZ A;  3CH2 X;  1AYW A;  2VHF A;  1F2B A;  5JZE A;  3IFU A;  1KXR A;  3O1G A;  3E9S A;  2AUX A;  1YZB A;  1DF0 A;  4I07 A;  3IV2 A;  3O65 A;  3IMA A;  4DMX A;  3IHP A;  2NQD B;  2E00 A;  3K8U A;  1QOL A;  2NQI A;  3QJ3 A;  4D8B A;  4R3D A;  2FYE A;  1NB5 A;  2PAD A;  1YT7 A;  2Y6E A;  3PSE A;  5E6J A;  3PRM A;  4D8I A;  1GCB A;  3OQC A;  3D6S A;  5EF4 A;  1A6R A;  1Y08 A;  5A24 A;  4K7C A;  1F2C A;  4PP2 E;  4BS5 A;  4YYS A;  1KHQ A;  2HD5 A;  3BWK A;  3TMP A;  1ICF A;  3M99 A;  3IUT A; 
#chains in the Genus database with same CATH homology
 3PHW A;  4BOZ A;  2Z84 A;  4M0W A;  5EZS A;  4A5U A;  4REZ A;  3B21 A;  5KO3 A;  3MP2 A;  3BY4 A;  2J7Q A;  3BBA A;  2JRI A;  1UKF A;  2DOS A;  2J7Q C;  4OVZ B;  4IUM A;  4OW0 A;  2FE8 A;  3PHX A;  2BU3 A;  4D8E A;  2UZJ A;  4OVZ A;  3PT2 A;  2JTC A;  4HXD B;  3RNV A;  4BOS A;  3C0R A;  4WUR A;  2HWK A;  4MI7 A;  4BOQ A;  5EZQ A;  3MTV A;  3PRP A;  2BTW B;  3W31 A;  4GUA A;  2BTW A;  4RF1 A;  4ZTB A;  5JZE A;  3IFU A;  3E9S A;  3MJ5 A;  1YZB A;  3O65 A;  4IP3 A;  4P16 A;  3BB7 A;  4PT5 A;  4RF0 A;  4D8B A;  4R3D A;  3W30 A;  3ZNH A;  4RNA A;  3PHU A;  4XZX A;  3PSE A;  5E6J A;  3PRM A;  4D8I A;  3OQC A;  4BOP A;  4BOU A;  2AGA A;  3TRK A;  1DKI A;  4RKX A;  3TMP A;  1PVJ A;  4MM3 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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