2JTCA

3d structure and backbone dynamics of spe b
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
253
structure length
253
Chain Sequence
QPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptopain
publication title Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.
pubmed doi rcsb
source organism Streptococcus pyogenes serotype m1
molecule tags Hydrolase
total genus 50
structure length 253
sequence length 253
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2007-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2jtcA00
3BBAA 3BB7A 1PVJA 4D8EA 4D8IA 4RKXA 2JTCA 2UZJA 4D8BA 1DKIA
chains in the Genus database with same CATH superfamily
2F7DA 2OZ2A 2FQ9A 4G54A 8PCHA 3O0UA 1Q6KA 1ZCMA 2Y5BA 4P6EA 1VSNA 1ATKA 3IUTA 2HD5A 3BOWA 3TRKA 2UZJA 1YT7A 1KHPA 4N4ZA 1SNKA 5A24A 3CH2X 4FIPA 1VJVA 1YALA 4I07A 3O65A 3CH3X 3RNVA 3H8BA 4CDDB 4REZA 4BOUA 3N3KA 1QMYA 2BDZA 3OF9A 1F2CA 3BCNA 2ACTA 2BTWA 1ME3A 2DOSA 4D8EA 3P5VA 1U9VA 1AYVA 3TMPA 1PPDA 4CDFB 1BQIA 2JQGR 4ZUXU 4QH6A 1GECE 4IP3A 3PDFA 5KO3A 3S3RA 1SP4B 4MM3B 3PT2A 2DCCA 2XU3A 4MI7A 4YYQA 1PCIA 4YYUA 2JTCA 2OULA 3NHEA 5J94A 1GMYA 3IV2A 3KX1A 4BS6A 2VHSA 2DJGB 3MTNA 3P5UA 1CV8A 1POPA 3BC3A 4BQVA 4CDCB 1CTEA 4KLBA 2DCAA 2O6XA 1ME4A 2DC8A 2Y6EA 1STFE 4N79A 2J7QC 1AECA 2AU1A 3WXFA 4QBBA 4AXMA 4D8BA 3U8EA 4RNAA 2FTDA 2B1NA 3OQCA 2YJCA 1K3BB 1PPOA 2YJBA 4A5UA 1AYUA 3S3QA 1NQCA 4OW0A 1HUCB 4PT5A 1EWPA 1CJLA 4FK5A 2DZYA 3DF0A 5CVMA 1F2BA 4XZXA 2HHNA 1ICFA 4CDEB 3PHWA 4M0WA 2XU4A 1CS8A 2HH5A 2NQGA 2GHUA 2BDLA 4YV8A 3AI8A 1UKFA 1QXPA 1PE6A 3MTVA 3ZNHA 1NPZA 3MJ5A 1MS6A 2YJ2A 3F75A 4GUAA 4MSXA 4OELA 2VHFA 3OISA 3BY4A 3IEJA 4CZWA 2E02A 1S4VA 2DC9A 1FH0A 3HD3A 1MEMA 4X6HA 5EZQA 2FO5A 1X9YA 2G8JA 4YYRA 2DJFB 2BU3A 3PNRA 5FPWA 1ZIVA 5CVNB 4ZTBA 1PVJA 2ATOA 4W5CA 4Q8HA 4AXLA 1PPPA 1TLOA 4P16A 1DKIA 2DZZA 3QJ3A 1YK8A 2R9OA 4WURA 2CB5A 1NB3A 3USVA 1AIMA 1AU0A 3MORA 2PREA 3MHHA 5JA7A 1BGOA 3BWKA 4BOZA 2C0YA 4HWYA 5K16A 4MZOA 2J7QA 4P6GA 3KSEA 1EWMA 3RVWA 2BTWB 1JQPA 3KW9A 3PSEA 4N8WA 1NLJA 3WXEA 4QRVA 1U9WA 4BS5A 2IPPB 3PHXA 1BP4A 2FE8A 3H7DA 3E9SA 3RVVA 1AU3A 1GLOA 1EF7A 2G7YA 3PW3A 1U5IA 3E1ZB 5PADA 3HHIA 3KFQA 3C9EA 1M6DA 2G8EA 2FYEA 4FJCA 2DC7A 1ITOA 4Q8GA 4X6IA 2E01A 2HWKA 5E6JA 3BBAA 1MEGA 3F5VA 4BOQA 2NQIA 2OP3A 3P5WA 5CHVA 3N3GA 1KFUL 3OVXA 3B21A 2NQAA 1YVBA 3K9MA 1XKGA 5CHTA 1MIRA 1CPJA 3V6EA 4OVZA 3QT4A 1NL6A 4RF1A 2AVWA 1IWDA 2WBFX 1CVZA 3MP2A 1O0EA 3BPFA 2YJ8A 2R9CA 2PNSA 3W31A 4RY2A 3TNXA 1TL9A 2ARYA 4K7CA 4PP1A 2P7UA 1PXVA 3KKUA 4YVAA 3KWBX 9PAPA 4BSQA 2XU1A 3PRMA 2R6NA 4OEMA 4X6JA 4HXDB 2AS8A 2FRAA 4QRGA 1U9QX 3IMAA 3KWZA 3D6SA 1KHQA 4DMXA 2IBIA 1KXRA 3P5XA 2AGAA 2JRIA 1YK7A 5EF4A 1BY8A 3HHAA 2AIMA 3H89A 5CVOB 2AYNA 2PBHA 1PBHA 3WXGA 4BOSA 2Z84A 4DMYA 3ZUAA 4W4UA 3GCBA 4XUIA 4PI3A 5EZSA 1MDWA 4I05A 3RVXA 1U9XA 4RKXA 3K24A 2FUDA 4WA6A 3BB7A 4YYSA 3HWNA 1NB5A 4XR7A 2G6DA 3CBKA 4IUMA 1CB5A 3O1GA 4MZSA 2FT2A 5JZEA 5EGWA 3OVZA 1THEA 5F02A 4YYVA 2P0RA 6PADA 1KFXL 2R9NA 3W30A 3K8UA 2AUZA 3IOQA 4R3DA 2AYOA 3CBJA 1AU2A 1MHWA 4YYWA 1CSBB 1QOLA 2YJ9A 4RF0A 3N4CA 1YZBA 2E00A 3QSDA 4W5BA 2DCBA 2FRQA 3IFUA 3IHPA 1F29A 2H7JA 1PIPA 4I04A 1CQDA 2E03A 1F2AA 3M99A 1DEUA 4BPVA 2F1GA 3V6CA 1AYWA 2PADA 3OF8A 4D8IA 1GCBA 3H8CA 2CIOA 1TU6A 1Y08A 2DCDA 3H6SA 5JH3A 2R9FA 2DC6A 3LFYA 2XU5A 1EWLA 3PHUA 4BOPA 2B1MA 3PRPA 4PP2E 3BPMA 1A6RA 1AU4A 3MHSA 7PCKA 2NQDB 4QRXA 1EWOA 1Y4HA 3LXSA 2HXZA 3I3TA 2JQFR 1DF0A 2P86A 2AUXA 4PADA 1PPNA 1QDQA 2GFOA 3B79A 3I06A 1PADA 3PBHA 3C0RA 4OVZB 3ERVA 2R9MA
chains in the Genus database with same CATH topology
4OW0A 4RKXA 3BB7A 4PT5A 3PHXA 2FE8A 3E9SA 4IUMA 3TRKA 2UZJA 4XZXA 5JZEA 3PHWA 4M0WA 3W30A 2HWKA 5E6JA 4R3DA 3BBAA 3O65A 1UKFA 4BOQA 3RNVA 4REZA 4BOUA 4RF0A 1YZBA 3MTVA 3ZNHA 3B21A 3MJ5A 2BTWA 2DOSA 4D8EA 3IFUA 4GUAA 4OVZA 3TMPA 4RF1A 3BY4A 3MP2A 4IP3A 5KO3A 4D8IA 3W31A 4MM3B 3PT2A 5EZQA 4MI7A 2JTCA 2BU3A 3PHUA 4BOPA 3PRPA 4ZTBA 1PVJA 3PRMA 4HXDB 4P16A 1DKIA 4WURA 2AGAA 2JRIA 2J7QC 4BOZA 4D8BA 4BOSA 2Z84A 2J7QA 4RNAA 3OQCA 2BTWB 4A5UA 3C0RA 3PSEA 4OVZB 5EZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBA A;  3BB7 A;  1PVJ A;  4D8E A;  4D8I A;  4RKX A;  2JTC A;  2UZJ A;  4D8B A;  1DKI A; 
#chains in the Genus database with same CATH topology
 2F7D A;  2OZ2 A;  2FQ9 A;  4G54 A;  8PCH A;  3O0U A;  1Q6K A;  1ZCM A;  2Y5B A;  4P6E A;  1VSN A;  1ATK A;  3IUT A;  2HD5 A;  3BOW A;  3TRK A;  2UZJ A;  1YT7 A;  1KHP A;  4N4Z A;  1SNK A;  5A24 A;  3CH2 X;  4FIP A;  1VJV A;  1YAL A;  4I07 A;  3O65 A;  3CH3 X;  3RNV A;  3H8B A;  4CDD B;  4REZ A;  4BOU A;  3N3K A;  1QMY A;  2BDZ A;  3OF9 A;  1F2C A;  3BCN A;  2ACT A;  2BTW A;  1ME3 A;  2DOS A;  4D8E A;  3P5V A;  1U9V A;  1AYV A;  3TMP A;  1PPD A;  4CDF B;  1BQI A;  2JQG R;  4ZUX U;  4QH6 A;  1GEC E;  4IP3 A;  3PDF A;  5KO3 A;  3S3R A;  1SP4 B;  4MM3 B;  3PT2 A;  2DCC A;  2XU3 A;  4MI7 A;  4YYQ A;  1PCI A;  4YYU A;  2JTC A;  2OUL A;  3NHE A;  5J94 A;  1GMY A;  3IV2 A;  3KX1 A;  4BS6 A;  2VHS A;  2DJG B;  3MTN A;  3P5U A;  1CV8 A;  1POP A;  3BC3 A;  4BQV A;  4CDC B;  1CTE A;  4KLB A;  2DCA A;  2O6X A;  1ME4 A;  2DC8 A;  2Y6E A;  1STF E;  4N79 A;  2J7Q C;  1AEC A;  2AU1 A;  3WXF A;  4QBB A;  4AXM A;  4D8B A;  3U8E A;  4RNA A;  2FTD A;  2B1N A;  3OQC A;  2YJC A;  1K3B B;  1PPO A;  2YJB A;  4A5U A;  1AYU A;  3S3Q A;  1NQC A;  4OW0 A;  1HUC B;  4PT5 A;  1EWP A;  1CJL A;  4FK5 A;  2DZY A;  3DF0 A;  5CVM A;  1F2B A;  4XZX A;  2HHN A;  1ICF A;  4CDE B;  3PHW A;  4M0W A;  2XU4 A;  1CS8 A;  2HH5 A;  2NQG A;  2GHU A;  2BDL A;  4YV8 A;  3AI8 A;  1UKF A;  1QXP A;  1PE6 A;  3MTV A;  3ZNH A;  1NPZ A;  3MJ5 A;  1MS6 A;  2YJ2 A;  3F75 A;  4GUA A;  4MSX A;  4OEL A;  2VHF A;  3OIS A;  3BY4 A;  3IEJ A;  4CZW A;  2E02 A;  1S4V A;  2DC9 A;  1FH0 A;  3HD3 A;  1MEM A;  4X6H A;  5EZQ A;  2FO5 A;  1X9Y A;  2G8J A;  4YYR A;  2DJF B;  2BU3 A;  3PNR A;  5FPW A;  1ZIV A;  5CVN B;  4ZTB A;  1PVJ A;  2ATO A;  4W5C A;  4Q8H A;  4AXL A;  1PPP A;  1TLO A;  4P16 A;  1DKI A;  2DZZ A;  3QJ3 A;  1YK8 A;  2R9O A;  4WUR A;  2CB5 A;  1NB3 A;  3USV A;  1AIM A;  1AU0 A;  3MOR A;  2PRE A;  3MHH A;  5JA7 A;  1BGO A;  3BWK A;  4BOZ A;  2C0Y A;  4HWY A;  5K16 A;  4MZO A;  2J7Q A;  4P6G A;  3KSE A;  1EWM A;  3RVW A;  2BTW B;  1JQP A;  3KW9 A;  3PSE A;  4N8W A;  1NLJ A;  3WXE A;  4QRV A;  1U9W A;  4BS5 A;  2IPP B;  3PHX A;  1BP4 A;  2FE8 A;  3H7D A;  3E9S A;  3RVV A;  1AU3 A;  1GLO A;  1EF7 A;  2G7Y A;  3PW3 A;  1U5I A;  3E1Z B;  5PAD A;  3HHI A;  3KFQ A;  3C9E A;  1M6D A;  2G8E A;  2FYE A;  4FJC A;  2DC7 A;  1ITO A;  4Q8G A;  4X6I A;  2E01 A;  2HWK A;  5E6J A;  3BBA A;  1MEG A;  3F5V A;  4BOQ A;  2NQI A;  2OP3 A;  3P5W A;  5CHV A;  3N3G A;  1KFU L;  3OVX A;  3B21 A;  2NQA A;  1YVB A;  3K9M A;  1XKG A;  5CHT A;  1MIR A;  1CPJ A;  3V6E A;  4OVZ A;  3QT4 A;  1NL6 A;  4RF1 A;  2AVW A;  1IWD A;  2WBF X;  1CVZ A;  3MP2 A;  1O0E A;  3BPF A;  2YJ8 A;  2R9C A;  2PNS A;  3W31 A;  4RY2 A;  3TNX A;  1TL9 A;  2ARY A;  4K7C A;  4PP1 A;  2P7U A;  1PXV A;  3KKU A;  4YVA A;  3KWB X;  9PAP A;  4BSQ A;  2XU1 A;  3PRM A;  2R6N A;  4OEM A;  4X6J A;  4HXD B;  2AS8 A;  2FRA A;  4QRG A;  1U9Q X;  3IMA A;  3KWZ A;  3D6S A;  1KHQ A;  4DMX A;  2IBI A;  1KXR A;  3P5X A;  2AGA A;  2JRI A;  1YK7 A;  5EF4 A;  1BY8 A;  3HHA A;  2AIM A;  3H89 A;  5CVO B;  2AYN A;  2PBH A;  1PBH A;  3WXG A;  4BOS A;  2Z84 A;  4DMY A;  3ZUA A;  4W4U A;  3GCB A;  4XUI A;  4PI3 A;  5EZS A;  1MDW A;  4I05 A;  3RVX A;  1U9X A;  4RKX A;  3K24 A;  2FUD A;  4WA6 A;  3BB7 A;  4YYS A;  3HWN A;  1NB5 A;  4XR7 A;  2G6D A;  3CBK A;  4IUM A;  1CB5 A;  3O1G A;  4MZS A;  2FT2 A;  5JZE A;  5EGW A;  3OVZ A;  1THE A;  5F02 A;  4YYV A;  2P0R A;  6PAD A;  1KFX L;  2R9N A;  3W30 A;  3K8U A;  2AUZ A;  3IOQ A;  4R3D A;  2AYO A;  3CBJ A;  1AU2 A;  1MHW A;  4YYW A;  1CSB B;  1QOL A;  2YJ9 A;  4RF0 A;  3N4C A;  1YZB A;  2E00 A;  3QSD A;  4W5B A;  2DCB A;  2FRQ A;  3IFU A;  3IHP A;  1F29 A;  2H7J A;  1PIP A;  4I04 A;  1CQD A;  2E03 A;  1F2A A;  3M99 A;  1DEU A;  4BPV A;  2F1G A;  3V6C A;  1AYW A;  2PAD A;  3OF8 A;  4D8I A;  1GCB A;  3H8C A;  2CIO A;  1TU6 A;  1Y08 A;  2DCD A;  3H6S A;  5JH3 A;  2R9F A;  2DC6 A;  3LFY A;  2XU5 A;  1EWL A;  3PHU A;  4BOP A;  2B1M A;  3PRP A;  4PP2 E;  3BPM A;  1A6R A;  1AU4 A;  3MHS A;  7PCK A;  2NQD B;  4QRX A;  1EWO A;  1Y4H A;  3LXS A;  2HXZ A;  3I3T A;  2JQF R;  1DF0 A;  2P86 A;  2AUX A;  4PAD A;  1PPN A;  1QDQ A;  2GFO A;  3B79 A;  3I06 A;  1PAD A;  3PBH A;  3C0R A;  4OVZ B;  3ERV A;  2R9M A; 
#chains in the Genus database with same CATH homology
 4OW0 A;  4RKX A;  3BB7 A;  4PT5 A;  3PHX A;  2FE8 A;  3E9S A;  4IUM A;  3TRK A;  2UZJ A;  4XZX A;  5JZE A;  3PHW A;  4M0W A;  3W30 A;  2HWK A;  5E6J A;  4R3D A;  3BBA A;  3O65 A;  1UKF A;  4BOQ A;  3RNV A;  4REZ A;  4BOU A;  4RF0 A;  1YZB A;  3MTV A;  3ZNH A;  3B21 A;  3MJ5 A;  2BTW A;  2DOS A;  4D8E A;  3IFU A;  4GUA A;  4OVZ A;  3TMP A;  4RF1 A;  3BY4 A;  3MP2 A;  4IP3 A;  5KO3 A;  4D8I A;  3W31 A;  4MM3 B;  3PT2 A;  5EZQ A;  4MI7 A;  2JTC A;  2BU3 A;  3PHU A;  4BOP A;  3PRP A;  4ZTB A;  1PVJ A;  3PRM A;  4HXD B;  4P16 A;  1DKI A;  4WUR A;  2AGA A;  2JRI A;  2J7Q C;  4BOZ A;  4D8B A;  4BOS A;  2Z84 A;  2J7Q A;  4RNA A;  3OQC A;  2BTW B;  4A5U A;  3C0R A;  3PSE A;  4OVZ B;  5EZS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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