2JTCA

3d structure and backbone dynamics of spe b
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
253
structure length
253
Chain Sequence
QPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.
pubmed doi rcsb
molecule tags Hydrolase
source organism Streptococcus pyogenes serotype m1
molecule keywords Streptopain
total genus 50
structure length 253
sequence length 253
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2007-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2jtcA00
2UZJA 3BBAA 3BB7A 1PVJA 4D8BA 4RKXA 4D8IA 4D8EA 1DKIA 2JTCA
chains in the Genus database with same CATH superfamily
2FE8A 3MORA 3GCBA 3LXSA 4OELA 1EWLA 1TL9A 1EWOA 3HHIA 2DCDA 2NQIA 4YYUA 1CQDA 4G54A 1U9VA 3K8UA 1CB5A 1STFE 4DMYA 3C9EA 1AU4A 3V6EA 7PCKA 2XU4A 2VHSA 3BPMA 4YYRA 2FTDA 2AUXA 1ZIVA 2BTWA 4CZWA 3KX1A 2P86A 1MEGA 3B79A 2R9NA 2ATOA 4Q8HA 1PPPA 3BC3A 4AXLA 2WBFX 3CH3X 1M6DA 1YVBA 5CHTA 1DKIA 1TU6A 2PREA 3PHXA 1YALA 2B1MA 3USVA 1VSNA 1CV8A 1KFUL 4HXDB 2HWKA 2FYEA 4OVZA 4X6HA 4QH6A 1K3BB 1EWMA 1CS8A 2OZ2A 4HWYA 4N4ZA 5A24A 3HD3A 2R9FA 4BOQA 1MIRA 2AUZA 3P5WA 5EF4A 5PADA 4REZA 1O0EA 4RY2A 2VHFA 2G8JA 3OF8A 1KXRA 2P0RA 4AXMA 4X6IA 4IUMA 5E6JA 2JRIA 4BS6A 4QRXA 2CB5A 3KKUA 4QRVA 4WURA 4P6GA 5F02A 1AU2A 4P6EA 3ZNHA 1BP4A 4MM3B 4I04A 3IEJA 1IWDA 3V6CA 1JQPA 2DJGB 2E03A 3AI8A 4YYVA 3F75A 5JA7A 3OISA 4Q8GA 2HD5A 1BGOA 2IPPB 3P5VA 5CVMA 2OULA 4DMXA 1PADA 3OVXA 6PADA 3N4CA 3IV2A 1F2BA 3PSEA 1AECA 9PAPA 2BDZA 3OF9A 1ICFA 3KSEA 3PRMA 2BDLA 4FIPA 2DOSA 3MHHA 4BSQA 2YJ9A 2BTWB 4X6JA 3BBAA 2JQGR 2AYNA 3PHUA 1DF0A 3QJ3A 4I07A 3LFYA 2BU3A 2HH5A 2FRQA 3O1GA 1QOLA 4FK5A 4QRGA 1MEMA 1NQCA 3KWZA 3IHPA 5K16A 1NB3A 1MHWA 3KFQA 4I05A 2DZZA 3H7DA 3PDFA 2CIOA 3O0UA 4OVZB 4YYWA 2G8EA 3MTVA 3O65A 3WXGA 3CH2X 2J7QC 1BY8A 2IBIA 4D8BA 4XZXA 1CVZA 3RNVA 3H89A 2PBHA 1UKFA 2Y5BA 1ITOA 1Y4HA 2PNSA 1GMYA 1ME3A 1PIPA 3RVXA 3K9MA 1PPDA 1KFXL 2R6NA 3I06A 5FPWA 2O6XA 8PCHA 2DC8A 4D8IA 4BOSA 1CPJA 1NLJA 1MDWA 5EZQA 3E1ZB 3S3QA 1FH0A 1X9YA 2R9CA 1ZCMA 5CVOB 4RF1A 3HHAA 2G7YA 4KLBA 3BWKA 3U8EA 4BOZA 1GCBA 1VJVA 3H8CA 1PPNA 2AGAA 2R9OA 3H8BA 3ERVA 3OVZA 2FQ9A 5JH3A 3IUTA 1GLOA 3I3TA 3P5UA 2J7QA 4MSXA 3MP2A 4W4UA 5KO3A 3BCNA 2NQAA 2FO5A 1CJLA 2DCBA 4MI7A 2DJFB 3C0RA 4FJCA 2FUDA 3PT2A 4MZSA 1YK7A 5EZSA 1CTEA 3M99A 2XU5A 1Y08A 4RF0A 3IFUA 2NQDB 3KWBX 3BPFA 2DC7A 1AIMA 4ZTBA 1TLOA 2H7JA 2AU1A 2YJ8A 2DCAA 2HXZA 2C0YA 2PADA 1KHPA 1Q6KA 1QXPA 2ACTA 4BOPA 3QT4A 2GHUA 2FT2A 2GFOA 4YVAA 4IP3A 2DC9A 3NHEA 3IMAA 2R9MA 4XR7A 3PRPA 3BOWA 1U5IA 2AVWA 2F7DA 4PI3A 1YK8A 1PCIA 2JQFR 4W5CA 2P7UA 2XU3A 5JZEA 4A5UA 2HHNA 4MZOA 3E9SA 1AYWA 3PW3A 3TNXA 2AS8A 1YT7A 4D8EA 4WA6A 1NB5A 4BS5A 3HWNA 4OW0A 4PP1A 3B21A 4YYQA 1F2AA 3PBHA 4YV8A 2YJ2A 2F1GA 4RKXA 3RVWA 1PBHA 3CBJA 1U9XA 1XKGA 3RVVA 1QDQA 4XUIA 3TMPA 1ME4A 4R3DA 1NPZA 5J94A 2Z84A 1QMYA 4YYSA 1HUCB 5CHVA 3WXEA 3PNRA 2AYOA 3W31A 1A6RA 1KHQA 4BPVA 4P16A 1CSBB 1EWPA 1MS6A 3MJ5A 1GECE 4CDEB 3S3RA 1F29A 2UZJA 3BB7A 2NQGA 2DC6A 3MHSA 3KW9A 1POPA 4N8WA 2E01A 2AIMA 3TRKA 3P5XA 4PT5A 1U9WA 1NL6A 4RNAA 2JTCA 3IOQA 2E00A 1AU0A 3N3KA 1THEA 1S4VA 4OEMA 1F2CA 3H6SA 3K24A 5EGWA 3PHWA 3BY4A 3OQCA 4CDCB 1AYVA 2B1NA 2YJCA 4PP2E 4BOUA 1DEUA 3N3GA 2XU1A 1PPOA 3F5VA 1BQIA 3CBKA 2ARYA 3WXFA 4K7CA 1U9QX 4CDDB 4M0WA 1EF7A 1AYUA 1SP4B 3MTNA 2FRAA 2DZYA 1PXVA 1PVJA 1YZBA 3D6SA 2OP3A 4N79A 2G6DA 5CVNB 3W30A 4BQVA 4CDFB 1AU3A 4W5BA 4PADA 4ZUXU 2E02A 1SNKA 3ZUAA 3DF0A 2YJBA 2DCCA 4GUAA 1PE6A 1ATKA 3QSDA 4QBBA 2Y6EA
chains in the Genus database with same CATH topology
4RF1A 3ZNHA 2FE8A 4BOZA 4MM3B 3TMPA 2AGAA 4R3DA 2Z84A 2J7QA 3W31A 3MP2A 4P16A 5KO3A 3MJ5A 3PSEA 2UZJA 3BB7A 3PRMA 4MI7A 3C0RA 3PT2A 2DOSA 5EZSA 3TRKA 4PT5A 4RF0A 2BTWA 4RNAA 2JTCA 2BTWB 3BBAA 3IFUA 3PHUA 4ZTBA 3BY4A 3PHWA 1DKIA 2BU3A 3OQCA 3PHXA 4BOPA 4BOUA 4HXDB 2HWKA 4OVZA 4IP3A 4OVZB 3MTVA 3PRPA 3O65A 2J7QC 4BOQA 4M0WA 4D8BA 4XZXA 3RNVA 5JZEA 4A5UA 1UKFA 3E9SA 1YZBA 1PVJA 4REZA 4D8EA 3W30A 4OW0A 3B21A 4IUMA 4D8IA 5E6JA 4BOSA 2JRIA 5EZQA 4RKXA 4GUAA 4WURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UZJ A;  3BBA A;  3BB7 A;  1PVJ A;  4D8B A;  4RKX A;  4D8I A;  4D8E A;  1DKI A;  2JTC A; 
#chains in the Genus database with same CATH topology
 2FE8 A;  3MOR A;  3GCB A;  3LXS A;  4OEL A;  1EWL A;  1TL9 A;  1EWO A;  3HHI A;  2DCD A;  2NQI A;  4YYU A;  1CQD A;  4G54 A;  1U9V A;  3K8U A;  1CB5 A;  1STF E;  4DMY A;  3C9E A;  1AU4 A;  3V6E A;  7PCK A;  2XU4 A;  2VHS A;  3BPM A;  4YYR A;  2FTD A;  2AUX A;  1ZIV A;  2BTW A;  4CZW A;  3KX1 A;  2P86 A;  1MEG A;  3B79 A;  2R9N A;  2ATO A;  4Q8H A;  1PPP A;  3BC3 A;  4AXL A;  2WBF X;  3CH3 X;  1M6D A;  1YVB A;  5CHT A;  1DKI A;  1TU6 A;  2PRE A;  3PHX A;  1YAL A;  2B1M A;  3USV A;  1VSN A;  1CV8 A;  1KFU L;  4HXD B;  2HWK A;  2FYE A;  4OVZ A;  4X6H A;  4QH6 A;  1K3B B;  1EWM A;  1CS8 A;  2OZ2 A;  4HWY A;  4N4Z A;  5A24 A;  3HD3 A;  2R9F A;  4BOQ A;  1MIR A;  2AUZ A;  3P5W A;  5EF4 A;  5PAD A;  4REZ A;  1O0E A;  4RY2 A;  2VHF A;  2G8J A;  3OF8 A;  1KXR A;  2P0R A;  4AXM A;  4X6I A;  4IUM A;  5E6J A;  2JRI A;  4BS6 A;  4QRX A;  2CB5 A;  3KKU A;  4QRV A;  4WUR A;  4P6G A;  5F02 A;  1AU2 A;  4P6E A;  3ZNH A;  1BP4 A;  4MM3 B;  4I04 A;  3IEJ A;  1IWD A;  3V6C A;  1JQP A;  2DJG B;  2E03 A;  3AI8 A;  4YYV A;  3F75 A;  5JA7 A;  3OIS A;  4Q8G A;  2HD5 A;  1BGO A;  2IPP B;  3P5V A;  5CVM A;  2OUL A;  4DMX A;  1PAD A;  3OVX A;  6PAD A;  3N4C A;  3IV2 A;  1F2B A;  3PSE A;  1AEC A;  9PAP A;  2BDZ A;  3OF9 A;  1ICF A;  3KSE A;  3PRM A;  2BDL A;  4FIP A;  2DOS A;  3MHH A;  4BSQ A;  2YJ9 A;  2BTW B;  4X6J A;  3BBA A;  2JQG R;  2AYN A;  3PHU A;  1DF0 A;  3QJ3 A;  4I07 A;  3LFY A;  2BU3 A;  2HH5 A;  2FRQ A;  3O1G A;  1QOL A;  4FK5 A;  4QRG A;  1MEM A;  1NQC A;  3KWZ A;  3IHP A;  5K16 A;  1NB3 A;  1MHW A;  3KFQ A;  4I05 A;  2DZZ A;  3H7D A;  3PDF A;  2CIO A;  3O0U A;  4OVZ B;  4YYW A;  2G8E A;  3MTV A;  3O65 A;  3WXG A;  3CH2 X;  2J7Q C;  1BY8 A;  2IBI A;  4D8B A;  4XZX A;  1CVZ A;  3RNV A;  3H89 A;  2PBH A;  1UKF A;  2Y5B A;  1ITO A;  1Y4H A;  2PNS A;  1GMY A;  1ME3 A;  1PIP A;  3RVX A;  3K9M A;  1PPD A;  1KFX L;  2R6N A;  3I06 A;  5FPW A;  2O6X A;  8PCH A;  2DC8 A;  4D8I A;  4BOS A;  1CPJ A;  1NLJ A;  1MDW A;  5EZQ A;  3E1Z B;  3S3Q A;  1FH0 A;  1X9Y A;  2R9C A;  1ZCM A;  5CVO B;  4RF1 A;  3HHA A;  2G7Y A;  4KLB A;  3BWK A;  3U8E A;  4BOZ A;  1GCB A;  1VJV A;  3H8C A;  1PPN A;  2AGA A;  2R9O A;  3H8B A;  3ERV A;  3OVZ A;  2FQ9 A;  5JH3 A;  3IUT A;  1GLO A;  3I3T A;  3P5U A;  2J7Q A;  4MSX A;  3MP2 A;  4W4U A;  5KO3 A;  3BCN A;  2NQA A;  2FO5 A;  1CJL A;  2DCB A;  4MI7 A;  2DJF B;  3C0R A;  4FJC A;  2FUD A;  3PT2 A;  4MZS A;  1YK7 A;  5EZS A;  1CTE A;  3M99 A;  2XU5 A;  1Y08 A;  4RF0 A;  3IFU A;  2NQD B;  3KWB X;  3BPF A;  2DC7 A;  1AIM A;  4ZTB A;  1TLO A;  2H7J A;  2AU1 A;  2YJ8 A;  2DCA A;  2HXZ A;  2C0Y A;  2PAD A;  1KHP A;  1Q6K A;  1QXP A;  2ACT A;  4BOP A;  3QT4 A;  2GHU A;  2FT2 A;  2GFO A;  4YVA A;  4IP3 A;  2DC9 A;  3NHE A;  3IMA A;  2R9M A;  4XR7 A;  3PRP A;  3BOW A;  1U5I A;  2AVW A;  2F7D A;  4PI3 A;  1YK8 A;  1PCI A;  2JQF R;  4W5C A;  2P7U A;  2XU3 A;  5JZE A;  4A5U A;  2HHN A;  4MZO A;  3E9S A;  1AYW A;  3PW3 A;  3TNX A;  2AS8 A;  1YT7 A;  4D8E A;  4WA6 A;  1NB5 A;  4BS5 A;  3HWN A;  4OW0 A;  4PP1 A;  3B21 A;  4YYQ A;  1F2A A;  3PBH A;  4YV8 A;  2YJ2 A;  2F1G A;  4RKX A;  3RVW A;  1PBH A;  3CBJ A;  1U9X A;  1XKG A;  3RVV A;  1QDQ A;  4XUI A;  3TMP A;  1ME4 A;  4R3D A;  1NPZ A;  5J94 A;  2Z84 A;  1QMY A;  4YYS A;  1HUC B;  5CHV A;  3WXE A;  3PNR A;  2AYO A;  3W31 A;  1A6R A;  1KHQ A;  4BPV A;  4P16 A;  1CSB B;  1EWP A;  1MS6 A;  3MJ5 A;  1GEC E;  4CDE B;  3S3R A;  1F29 A;  2UZJ A;  3BB7 A;  2NQG A;  2DC6 A;  3MHS A;  3KW9 A;  1POP A;  4N8W A;  2E01 A;  2AIM A;  3TRK A;  3P5X A;  4PT5 A;  1U9W A;  1NL6 A;  4RNA A;  2JTC A;  3IOQ A;  2E00 A;  1AU0 A;  3N3K A;  1THE A;  1S4V A;  4OEM A;  1F2C A;  3H6S A;  3K24 A;  5EGW A;  3PHW A;  3BY4 A;  3OQC A;  4CDC B;  1AYV A;  2B1N A;  2YJC A;  4PP2 E;  4BOU A;  1DEU A;  3N3G A;  2XU1 A;  1PPO A;  3F5V A;  1BQI A;  3CBK A;  2ARY A;  3WXF A;  4K7C A;  1U9Q X;  4CDD B;  4M0W A;  1EF7 A;  1AYU A;  1SP4 B;  3MTN A;  2FRA A;  2DZY A;  1PXV A;  1PVJ A;  1YZB A;  3D6S A;  2OP3 A;  4N79 A;  2G6D A;  5CVN B;  3W30 A;  4BQV A;  4CDF B;  1AU3 A;  4W5B A;  4PAD A;  4ZUX U;  2E02 A;  1SNK A;  3ZUA A;  3DF0 A;  2YJB A;  2DCC A;  4GUA A;  1PE6 A;  1ATK A;  3QSD A;  4QBB A;  2Y6E A; 
#chains in the Genus database with same CATH homology
 4RF1 A;  3ZNH A;  2FE8 A;  4BOZ A;  4MM3 B;  3TMP A;  2AGA A;  4R3D A;  2Z84 A;  2J7Q A;  3W31 A;  3MP2 A;  4P16 A;  5KO3 A;  3MJ5 A;  3PSE A;  2UZJ A;  3BB7 A;  3PRM A;  4MI7 A;  3C0R A;  3PT2 A;  2DOS A;  5EZS A;  3TRK A;  4PT5 A;  4RF0 A;  2BTW A;  4RNA A;  2JTC A;  2BTW B;  3BBA A;  3IFU A;  3PHU A;  4ZTB A;  3BY4 A;  3PHW A;  1DKI A;  2BU3 A;  3OQC A;  3PHX A;  4BOP A;  4BOU A;  4HXD B;  2HWK A;  4OVZ A;  4IP3 A;  4OVZ B;  3MTV A;  3PRP A;  3O65 A;  2J7Q C;  4BOQ A;  4M0W A;  4D8B A;  4XZX A;  3RNV A;  5JZE A;  4A5U A;  1UKF A;  3E9S A;  1YZB A;  1PVJ A;  4REZ A;  4D8E A;  3W30 A;  4OW0 A;  3B21 A;  4IUM A;  4D8I A;  5E6J A;  4BOS A;  2JRI A;  5EZQ A;  4RKX A;  4GUA A;  4WUR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...