2JTCA

3d structure and backbone dynamics of spe b
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
253
structure length
253
Chain Sequence
QPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.
pubmed doi rcsb
source organism Streptococcus pyogenes serotype m1
molecule tags Hydrolase
molecule keywords Streptopain
total genus 50
structure length 253
sequence length 253
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2007-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2jtcA00
2JTCA 4D8IA 3BBAA 4D8EA 3BB7A 1PVJA 1DKIA 4D8BA 2UZJA 4RKXA
chains in the Genus database with same CATH superfamily
3PHUA 2R9OA 4D8IA 3RVWA 4A5UA 3W30A 1POPA 2AVWA 3CH2X 4REZA 4XZXA 5F02A 3ZNHA 1PPNA 4W5BA 4OVZB 3TNXA 1F2CA 1U9QX 3D6SA 3IV2A 1PE6A 2P86A 1SP4B 4HXDB 4M0WA 3V6EA 1AU4A 4MM3B 4HWYA 4AXMA 1PPDA 3H6SA 1EWPA 3NHEA 2AU1A 4YVAA 3K9MA 2YJ9A 1AU2A 1YALA 2GFOA 1U5IA 4W5CA 4X6JA 1PIPA 2BTWB 3KW9A 1DEUA 1HUCB 1THEA 3W31A 1QMYA 5JZEA 2AYNA 4MSXA 1F2BA 5K16A 2PADA 3P5WA 1U9WA 1QDQA 4KLBA 2DC8A 2DCDA 3M99A 3HWNA 1YVBA 2IPPB 5EF4A 3B21A 4P6EA 1VSNA 2R9CA 3H8BA 5PADA 1F29A 1ZIVA 4N79A 4D8EA 1PXVA 5A24A 1PADA 4BS5A 1BGOA 4YYQA 1S4VA 4OELA 4QH6A 1GECE 2AIMA 2P0RA 4MZOA 2XU3A 1CB5A 4OW0A 3OISA 4RF1A 2Z84A 1KFXL 3V6CA 2BDZA 3MTNA 2DZYA 3OVXA 1Y4HA 2IBIA 3BPFA 3RVVA 1TL9A 2CIOA 3P5VA 4YYSA 3I06A 5CVNB 4X6IA 3S3QA 3TRKA 1ME4A 1PVJA 3WXEA 3MJ5A 4QBBA 3OQCA 1GCBA 3CBJA 2F1GA 4YYUA 4DMXA 4ZUXU 3AI8A 1CJLA 2VHFA 2ACTA 4CDCB 2C0YA 3IFUA 4CDFB 4QRXA 5EZQA 3HD3A 1MDWA 2YJ8A 2R9MA 1TU6A 4G54A 3P5UA 1ITOA 2ATOA 3CH3X 3PRPA 3N3GA 8PCHA 2PREA 4K7CA 4BOZA 1Q6KA 3PDFA 1QXPA 1UKFA 2E02A 2FTDA 3DF0A 2XU1A 1JQPA 2DCCA 1XKGA 3PBHA 4MI7A 2DJFB 4BOSA 3PNRA 2CB5A 5J94A 3H89A 3PHXA 4I07A 4GUAA 7PCKA 2FT2A 3O1GA 2R6NA 4CZWA 3F5VA 3CBKA 2FQ9A 1NQCA 2BTWA 4FK5A 1VJVA 1NLJA 4OVZA 1ZCMA 2ARYA 4XR7A 2BDLA 5JA7A 1DF0A 1EF7A 3QT4A 1MEMA 2J7QA 3K24A 2Y6EA 1KFUL 4BOQA 2B1NA 4P16A 3P5XA 4PT5A 2VHSA 1CVZA 2F7DA 2G8EA 4BQVA 2JQGR 4OEMA 1O0EA 2R9FA 4P6GA 2DJGB 2WBFX 3IHPA 1FH0A 4QRGA 2FYEA 3MORA 2HD5A 4YYWA 1AU3A 2FUDA 4FIPA 2YJBA 1CV8A 3C9EA 3PHWA 1QOLA 1DKIA 2DCBA 2NQDB 1PPPA 2HWKA 9PAPA 1BP4A 2JQFR 3KWZA 1CSBB 1AYVA 3KSEA 2E03A 4W4UA 3USVA 2DOSA 3I3TA 4AXLA 2HHNA 3WXFA 3N4CA 3LXSA 2YJ2A 4BOPA 4RF0A 1EWOA 2FRAA 2GHUA 4BPVA 2NQAA 3IEJA 3KKUA 1M6DA 2AGAA 3BY4A 3MHHA 3PRMA 2DC9A 4RY2A 4PI3A 2P7UA 4WA6A 3RNVA 3ERVA 2G7YA 2PBHA 2DC7A 2NQIA 2FRQA 4CDDB 2E00A 3U8EA 1EWMA 3MP2A 3TMPA 4R3DA 4WURA 2XU5A 2DZZA 5E6JA 2HH5A 4YV8A 1YZBA 4RKXA 1PPOA 1AU0A 3LFYA 3OVZA 5KO3A 1ME3A 5CHVA 4MZSA 1YK8A 1AYWA 1PBHA 4XUIA 3KFQA 3IOQA 3IUTA 1F2AA 5CVMA 1KHPA 1KXRA 1GLOA 3GCBA 3WXGA 3RVXA 1TLOA 5FPWA 2XU4A 3BPMA 3BOWA 2J7QC 4YYRA 1PCIA 3O65A 1ICFA 5EGWA 4IUMA 1MEGA 1U9XA 3F75A 1CTEA 4N4ZA 3QJ3A 4N8WA 2E01A 2YJCA 3PW3A 4FJCA 3O0UA 1KHQA 3HHAA 4D8BA 2B1MA 3H8CA 1Y08A 2FO5A 1X9YA 1CS8A 1STFE 1AIMA 4IP3A 2FE8A 3H7DA 3B79A 1YT7A 6PADA 3E1ZB 2JRIA 2G6DA 3PSEA 4PP2E 1NB3A 1K3BB 4RNAA 4DMYA 3BC3A 2AUXA 3S3RA 2UZJA 5CHTA 3BWKA 4ZTBA 1CQDA 1BY8A 1MIRA 2HXZA 1EWLA 3N3KA 2Y5BA 1IWDA 4YYVA 2BU3A 1U9VA 4Q8GA 2OULA 4QRVA 1AYUA 2DCAA 3IMAA 1NB5A 1A6RA 3KWBX 2AUZA 1NPZA 2NQGA 4X6HA 3QSDA 3KX1A 3E9SA 3ZUAA 2OZ2A 3BB7A 2O6XA 4BSQA 1ATKA 1YK7A 4BOUA 2PNSA 4Q8HA 2H7JA 5CVOB 1GMYA 1MS6A 3PT2A 3HHIA 2JTCA 1NL6A 3MHSA 3BCNA 5EZSA 4BS6A 4I04A 1BQIA 4I05A 1MHWA 1SNKA 3C0RA 5JH3A 2R9NA 3OF8A 2AYOA 4PP1A 4PADA 3OF9A 1CPJA 3BBAA 3MTVA 3K8UA 4CDEB 2OP3A 1AECA 2AS8A 2DC6A 2G8JA
chains in the Genus database with same CATH topology
5EZSA 3PHUA 3O65A 4OW0A 4IUMA 4RNAA 2J7QA 4BOSA 3PRPA 4D8IA 3BB7A 4RF1A 2Z84A 4A5UA 3W30A 5KO3A 4BOZA 2UZJA 3PHXA 4BOQA 4GUAA 3PSEA 4ZTBA 3RNVA 4REZA 4XZXA 3ZNHA 4BOUA 4P16A 1UKFA 2DOSA 3B21A 3C0RA 4D8BA 4OVZB 2BU3A 2BTWB 3IFUA 3MP2A 4PT5A 3TMPA 2BTWA 3PHWA 3BBAA 4R3DA 4WURA 5EZQA 3W31A 4BOPA 4D8EA 1DKIA 4RF0A 3MTVA 5JZEA 4MM3B 4OVZA 5E6JA 3PT2A 2JTCA 4MI7A 4M0WA 4HXDB 2J7QC 2AGAA 3TRKA 2HWKA 4IP3A 1PVJA 2FE8A 1YZBA 3BY4A 3MJ5A 3OQCA 3E9SA 3PRMA 2JRIA 4RKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JTC A;  4D8I A;  3BBA A;  4D8E A;  3BB7 A;  1PVJ A;  1DKI A;  4D8B A;  2UZJ A;  4RKX A; 
#chains in the Genus database with same CATH topology
 3PHU A;  2R9O A;  4D8I A;  3RVW A;  4A5U A;  3W30 A;  1POP A;  2AVW A;  3CH2 X;  4REZ A;  4XZX A;  5F02 A;  3ZNH A;  1PPN A;  4W5B A;  4OVZ B;  3TNX A;  1F2C A;  1U9Q X;  3D6S A;  3IV2 A;  1PE6 A;  2P86 A;  1SP4 B;  4HXD B;  4M0W A;  3V6E A;  1AU4 A;  4MM3 B;  4HWY A;  4AXM A;  1PPD A;  3H6S A;  1EWP A;  3NHE A;  2AU1 A;  4YVA A;  3K9M A;  2YJ9 A;  1AU2 A;  1YAL A;  2GFO A;  1U5I A;  4W5C A;  4X6J A;  1PIP A;  2BTW B;  3KW9 A;  1DEU A;  1HUC B;  1THE A;  3W31 A;  1QMY A;  5JZE A;  2AYN A;  4MSX A;  1F2B A;  5K16 A;  2PAD A;  3P5W A;  1U9W A;  1QDQ A;  4KLB A;  2DC8 A;  2DCD A;  3M99 A;  3HWN A;  1YVB A;  2IPP B;  5EF4 A;  3B21 A;  4P6E A;  1VSN A;  2R9C A;  3H8B A;  5PAD A;  1F29 A;  1ZIV A;  4N79 A;  4D8E A;  1PXV A;  5A24 A;  1PAD A;  4BS5 A;  1BGO A;  4YYQ A;  1S4V A;  4OEL A;  4QH6 A;  1GEC E;  2AIM A;  2P0R A;  4MZO A;  2XU3 A;  1CB5 A;  4OW0 A;  3OIS A;  4RF1 A;  2Z84 A;  1KFX L;  3V6C A;  2BDZ A;  3MTN A;  2DZY A;  3OVX A;  1Y4H A;  2IBI A;  3BPF A;  3RVV A;  1TL9 A;  2CIO A;  3P5V A;  4YYS A;  3I06 A;  5CVN B;  4X6I A;  3S3Q A;  3TRK A;  1ME4 A;  1PVJ A;  3WXE A;  3MJ5 A;  4QBB A;  3OQC A;  1GCB A;  3CBJ A;  2F1G A;  4YYU A;  4DMX A;  4ZUX U;  3AI8 A;  1CJL A;  2VHF A;  2ACT A;  4CDC B;  2C0Y A;  3IFU A;  4CDF B;  4QRX A;  5EZQ A;  3HD3 A;  1MDW A;  2YJ8 A;  2R9M A;  1TU6 A;  4G54 A;  3P5U A;  1ITO A;  2ATO A;  3CH3 X;  3PRP A;  3N3G A;  8PCH A;  2PRE A;  4K7C A;  4BOZ A;  1Q6K A;  3PDF A;  1QXP A;  1UKF A;  2E02 A;  2FTD A;  3DF0 A;  2XU1 A;  1JQP A;  2DCC A;  1XKG A;  3PBH A;  4MI7 A;  2DJF B;  4BOS A;  3PNR A;  2CB5 A;  5J94 A;  3H89 A;  3PHX A;  4I07 A;  4GUA A;  7PCK A;  2FT2 A;  3O1G A;  2R6N A;  4CZW A;  3F5V A;  3CBK A;  2FQ9 A;  1NQC A;  2BTW A;  4FK5 A;  1VJV A;  1NLJ A;  4OVZ A;  1ZCM A;  2ARY A;  4XR7 A;  2BDL A;  5JA7 A;  1DF0 A;  1EF7 A;  3QT4 A;  1MEM A;  2J7Q A;  3K24 A;  2Y6E A;  1KFU L;  4BOQ A;  2B1N A;  4P16 A;  3P5X A;  4PT5 A;  2VHS A;  1CVZ A;  2F7D A;  2G8E A;  4BQV A;  2JQG R;  4OEM A;  1O0E A;  2R9F A;  4P6G A;  2DJG B;  2WBF X;  3IHP A;  1FH0 A;  4QRG A;  2FYE A;  3MOR A;  2HD5 A;  4YYW A;  1AU3 A;  2FUD A;  4FIP A;  2YJB A;  1CV8 A;  3C9E A;  3PHW A;  1QOL A;  1DKI A;  2DCB A;  2NQD B;  1PPP A;  2HWK A;  9PAP A;  1BP4 A;  2JQF R;  3KWZ A;  1CSB B;  1AYV A;  3KSE A;  2E03 A;  4W4U A;  3USV A;  2DOS A;  3I3T A;  4AXL A;  2HHN A;  3WXF A;  3N4C A;  3LXS A;  2YJ2 A;  4BOP A;  4RF0 A;  1EWO A;  2FRA A;  2GHU A;  4BPV A;  2NQA A;  3IEJ A;  3KKU A;  1M6D A;  2AGA A;  3BY4 A;  3MHH A;  3PRM A;  2DC9 A;  4RY2 A;  4PI3 A;  2P7U A;  4WA6 A;  3RNV A;  3ERV A;  2G7Y A;  2PBH A;  2DC7 A;  2NQI A;  2FRQ A;  4CDD B;  2E00 A;  3U8E A;  1EWM A;  3MP2 A;  3TMP A;  4R3D A;  4WUR A;  2XU5 A;  2DZZ A;  5E6J A;  2HH5 A;  4YV8 A;  1YZB A;  4RKX A;  1PPO A;  1AU0 A;  3LFY A;  3OVZ A;  5KO3 A;  1ME3 A;  5CHV A;  4MZS A;  1YK8 A;  1AYW A;  1PBH A;  4XUI A;  3KFQ A;  3IOQ A;  3IUT A;  1F2A A;  5CVM A;  1KHP A;  1KXR A;  1GLO A;  3GCB A;  3WXG A;  3RVX A;  1TLO A;  5FPW A;  2XU4 A;  3BPM A;  3BOW A;  2J7Q C;  4YYR A;  1PCI A;  3O65 A;  1ICF A;  5EGW A;  4IUM A;  1MEG A;  1U9X A;  3F75 A;  1CTE A;  4N4Z A;  3QJ3 A;  4N8W A;  2E01 A;  2YJC A;  3PW3 A;  4FJC A;  3O0U A;  1KHQ A;  3HHA A;  4D8B A;  2B1M A;  3H8C A;  1Y08 A;  2FO5 A;  1X9Y A;  1CS8 A;  1STF E;  1AIM A;  4IP3 A;  2FE8 A;  3H7D A;  3B79 A;  1YT7 A;  6PAD A;  3E1Z B;  2JRI A;  2G6D A;  3PSE A;  4PP2 E;  1NB3 A;  1K3B B;  4RNA A;  4DMY A;  3BC3 A;  2AUX A;  3S3R A;  2UZJ A;  5CHT A;  3BWK A;  4ZTB A;  1CQD A;  1BY8 A;  1MIR A;  2HXZ A;  1EWL A;  3N3K A;  2Y5B A;  1IWD A;  4YYV A;  2BU3 A;  1U9V A;  4Q8G A;  2OUL A;  4QRV A;  1AYU A;  2DCA A;  3IMA A;  1NB5 A;  1A6R A;  3KWB X;  2AUZ A;  1NPZ A;  2NQG A;  4X6H A;  3QSD A;  3KX1 A;  3E9S A;  3ZUA A;  2OZ2 A;  3BB7 A;  2O6X A;  4BSQ A;  1ATK A;  1YK7 A;  4BOU A;  2PNS A;  4Q8H A;  2H7J A;  5CVO B;  1GMY A;  1MS6 A;  3PT2 A;  3HHI A;  2JTC A;  1NL6 A;  3MHS A;  3BCN A;  5EZS A;  4BS6 A;  4I04 A;  1BQI A;  4I05 A;  1MHW A;  1SNK A;  3C0R A;  5JH3 A;  2R9N A;  3OF8 A;  2AYO A;  4PP1 A;  4PAD A;  3OF9 A;  1CPJ A;  3BBA A;  3MTV A;  3K8U A;  4CDE B;  2OP3 A;  1AEC A;  2AS8 A;  2DC6 A;  2G8J A; 
#chains in the Genus database with same CATH homology
 5EZS A;  3PHU A;  3O65 A;  4OW0 A;  4IUM A;  4RNA A;  2J7Q A;  4BOS A;  3PRP A;  4D8I A;  3BB7 A;  4RF1 A;  2Z84 A;  4A5U A;  3W30 A;  5KO3 A;  4BOZ A;  2UZJ A;  3PHX A;  4BOQ A;  4GUA A;  3PSE A;  4ZTB A;  3RNV A;  4REZ A;  4XZX A;  3ZNH A;  4BOU A;  4P16 A;  1UKF A;  2DOS A;  3B21 A;  3C0R A;  4D8B A;  4OVZ B;  2BU3 A;  2BTW B;  3IFU A;  3MP2 A;  4PT5 A;  3TMP A;  2BTW A;  3PHW A;  3BBA A;  4R3D A;  4WUR A;  5EZQ A;  3W31 A;  4BOP A;  4D8E A;  1DKI A;  4RF0 A;  3MTV A;  5JZE A;  4MM3 B;  4OVZ A;  5E6J A;  3PT2 A;  2JTC A;  4MI7 A;  4M0W A;  4HXD B;  2J7Q C;  2AGA A;  3TRK A;  2HWK A;  4IP3 A;  1PVJ A;  2FE8 A;  1YZB A;  3BY4 A;  3MJ5 A;  3OQC A;  3E9S A;  3PRM A;  2JRI A;  4RKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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