2JTCA

3d structure and backbone dynamics of spe b
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
253
structure length
253
Chain Sequence
QPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWGGVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.
pubmed doi rcsb
molecule keywords Streptopain
source organism Streptococcus pyogenes serotype m1
molecule tags Hydrolase
total genus 50
structure length 253
sequence length 253
ec nomenclature ec 3.4.22.10: Streptopain.
pdb deposition date 2007-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2jtcA00
3BBAA 4D8EA 2JTCA 3BB7A 4D8IA 2UZJA 1DKIA 4D8BA 4RKXA 1PVJA
chains in the Genus database with same CATH superfamily
2ATOA 1GMYA 4QRVA 2B1MA 4W4UA 1ME4A 3RVXA 1F29A 3CBKA 1QDQA 1MEMA 1PPPA 3PBHA 1AYVA 1KFXL 3P5UA 2R9FA 4W5BA 1NL6A 2E01A 4A5UA 1QXPA 3ERVA 3S3QA 3IOQA 3K8UA 1EWOA 3B79A 4R3DA 4FIPA 3I06A 1YZBA 3KW9A 2FRQA 4QH6A 2H7JA 2JQGR 3OVXA 1CS8A 4YYUA 4W5CA 2P7UA 1O0EA 4PADA 2AU1A 2J7QC 3F5VA 5PADA 2NQDB 1JQPA 4WURA 1NB5A 4IP3A 1EWMA 1EF7A 3OF9A 1AU0A 4X6HA 4MSXA 5CVOB 4D8IA 2YJBA 1YT7A 1CQDA 1TU6A 5CVMA 1FH0A 3MP2A 2O6XA 2AIMA 4N8WA 3ZNHA 3ZUAA 1VSNA 1MEGA 3QSDA 4YV8A 2FT2A 3P5WA 3N3GA 3D6SA 3BBAA 3H89A 1ZIVA 1Q6KA 4XZXA 2FYEA 1F2BA 4CDEB 3K24A 1PVJA 4OELA 3PDFA 3RVWA 4PT5A 3M99A 2DCBA 4BS5A 3MORA 4HXDB 3BWKA 2PNSA 8PCHA 2FQ9A 4QBBA 2YJ8A 5EGWA 3E9SA 3KKUA 1EWPA 3BB7A 4X6JA 2B1NA 2IPPB 2YJ2A 3WXGA 4BSQA 3LXSA 3P5XA 4MM3B 3H8CA 3MTNA 1Y4HA 3I3TA 2ARYA 4CDDB 1UKFA 2R9NA 7PCKA 4BOPA 2R6NA 4PP2E 2DC9A 5EZSA 3AI8A 3N4CA 1PPDA 2NQAA 3H7DA 4AXMA 2GHUA 2G6DA 2BU3A 4OVZA 3V6CA 4I07A 5K16A 4OEMA 4N4ZA 2OULA 2AVWA 2HH5A 1CTEA 3IUTA 3HHIA 2DCDA 2AGAA 1PBHA 1CV8A 3E1ZB 1NLJA 1U9WA 3BY4A 1KXRA 5EF4A 2XU3A 1GLOA 3HWNA 1STFE 3B21A 2CIOA 1U9QX 1AECA 3KX1A 3V6EA 4BS6A 3O0UA 1YALA 1Y08A 1CJLA 2P0RA 3P5VA 4MI7A 4K7CA 2WBFX 1U9XA 4CDFB 4FJCA 2GFOA 1QOLA 2FTDA 1BP4A 1ZCMA 3PRMA 1A6RA 1THEA 2Y5BA 1AU3A 1PIPA 6PADA 2R9CA 1KHQA 3DF0A 3PNRA 3H6SA 2HD5A 2BTWA 1S4VA 1X9YA 4G54A 2DJFB 1U9VA 1U5IA 2E03A 4AXLA 1IWDA 4MZOA 1MS6A 1PPOA 2AUZA 1POPA 1NPZA 3TNXA 3TMPA 2BTWB 1PPNA 1MDWA 1PCIA 2JQFR 3BPMA 5JA7A 4QRXA 3MHSA 4CZWA 2OZ2A 1QMYA 3QT4A 5JH3A 1NB3A 1TLOA 1M6DA 5CVNB 4P16A 4BPVA 3C9EA 2NQIA 9PAPA 2E00A 4CDCB 1DKIA 1CVZA 1BY8A 5CHVA 2HHNA 4DMYA 3OF8A 1AYWA 4P6EA 3F75A 4ZUXU 2AS8A 4YYVA 2DC8A 3IFUA 3PHWA 2UZJA 4FK5A 4RF0A 1YK8A 3OQCA 1XKGA 2DOSA 2HWKA 5CHTA 4XUIA 3PSEA 2DC6A 3CH3X 2G7YA 4YYSA 3NHEA 1CPJA 4Q8GA 1F2CA 1GECE 3C0RA 2Y6EA 4P6GA 4BOSA 4DMXA 3U8EA 2F1GA 2IBIA 2E02A 4BOUA 3WXEA 1PE6A 3MJ5A 4Q8HA 4RY2A 3PT2A 3BCNA 4OVZB 1F2AA 5EZQA 4GUAA 3MTVA 1DF0A 3PHXA 2FRAA 1SNKA 2R9MA 1MHWA 2Z84A 4HWYA 3RNVA 4RNAA 5J94A 2BDZA 4RKXA 4YVAA 3W31A 3GCBA 2F7DA 3O1GA 2DCCA 3IEJA 4M0WA 1BQIA 1ICFA 4I05A 3KFQA 2XU4A 2P86A 3K9MA 3QJ3A 4N79A 3CH2X 4YYWA 2FE8A 5FPWA 2XU5A 4MZSA 2AYOA 4BQVA 1YVBA 1PADA 2VHSA 5E6JA 2PADA 1BGOA 4X6IA 3N3KA 1ME3A 4ZTBA 1AIMA 2C0YA 1YK7A 3BOWA 3PW3A 1MIRA 2BDLA 3BC3A 2VHFA 3IV2A 3TRKA 3WXFA 4I04A 1K3BB 3IHPA 3KSEA 2PREA 2DJGB 3CBJA 4YYRA 3O65A 3KWBX 3PHUA 1EWLA 2G8JA 3PRPA 2J7QA 5KO3A 2YJ9A 2JRIA 4D8EA 2FUDA 5JZEA 4PP1A 2XU1A 3BPFA 4BOQA 1TL9A 1SP4B 4RF1A 4WA6A 4YYQA 1CSBB 1KFUL 1KHPA 2AYNA 2AUXA 3LFYA 2DC7A 4D8BA 3OISA 2DZZA 2FO5A 4KLBA 2R9OA 2JTCA 3HD3A 3S3RA 4IUMA 2ACTA 2DZYA 2G8EA 1NQCA 4QRGA 2CB5A 1ITOA 3W30A 1AU4A 2HXZA 3KWZA 3USVA 3H8BA 2DCAA 2YJCA 1HUCB 4BOZA 1ATKA 2OP3A 3HHAA 1GCBA 5F02A 3MHHA 3RVVA 4REZA 1VJVA 3OVZA 2NQGA 4XR7A 1AU2A 1DEUA 5A24A 2PBHA 1PXVA 1CB5A 4OW0A 1AYUA 4PI3A 3IMAA
chains in the Genus database with same CATH topology
1UKFA 3TMPA 2BTWB 5E6JA 4BOPA 4A5UA 5EZSA 4P16A 4R3DA 4ZTBA 1YZBA 1DKIA 2BU3A 4OVZA 2J7QC 3IFUA 3PHWA 2UZJA 4RF0A 3OQCA 3TRKA 4WURA 2DOSA 2HWKA 4IP3A 3PSEA 2AGAA 3O65A 3PHUA 3C0RA 3BY4A 3PRPA 2J7QA 4D8IA 4BOSA 2JRIA 4D8EA 3MP2A 3B21A 5JZEA 3ZNHA 4BOUA 4BOQA 4RF1A 3MJ5A 3PT2A 4MI7A 4D8BA 4OVZB 3BBAA 5EZQA 4GUAA 4XZXA 2JTCA 3MTVA 4IUMA 1PVJA 3PHXA 3PRMA 3W30A 2Z84A 3RNVA 4RNAA 4PT5A 4RKXA 3W31A 4BOZA 4HXDB 4M0WA 3E9SA 4REZA 3BB7A 2BTWA 4OW0A 4MM3B 2FE8A 5KO3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBA A;  4D8E A;  2JTC A;  3BB7 A;  4D8I A;  2UZJ A;  1DKI A;  4D8B A;  4RKX A;  1PVJ A; 
#chains in the Genus database with same CATH topology
 2ATO A;  1GMY A;  4QRV A;  2B1M A;  4W4U A;  1ME4 A;  3RVX A;  1F29 A;  3CBK A;  1QDQ A;  1MEM A;  1PPP A;  3PBH A;  1AYV A;  1KFX L;  3P5U A;  2R9F A;  4W5B A;  1NL6 A;  2E01 A;  4A5U A;  1QXP A;  3ERV A;  3S3Q A;  3IOQ A;  3K8U A;  1EWO A;  3B79 A;  4R3D A;  4FIP A;  3I06 A;  1YZB A;  3KW9 A;  2FRQ A;  4QH6 A;  2H7J A;  2JQG R;  3OVX A;  1CS8 A;  4YYU A;  4W5C A;  2P7U A;  1O0E A;  4PAD A;  2AU1 A;  2J7Q C;  3F5V A;  5PAD A;  2NQD B;  1JQP A;  4WUR A;  1NB5 A;  4IP3 A;  1EWM A;  1EF7 A;  3OF9 A;  1AU0 A;  4X6H A;  4MSX A;  5CVO B;  4D8I A;  2YJB A;  1YT7 A;  1CQD A;  1TU6 A;  5CVM A;  1FH0 A;  3MP2 A;  2O6X A;  2AIM A;  4N8W A;  3ZNH A;  3ZUA A;  1VSN A;  1MEG A;  3QSD A;  4YV8 A;  2FT2 A;  3P5W A;  3N3G A;  3D6S A;  3BBA A;  3H89 A;  1ZIV A;  1Q6K A;  4XZX A;  2FYE A;  1F2B A;  4CDE B;  3K24 A;  1PVJ A;  4OEL A;  3PDF A;  3RVW A;  4PT5 A;  3M99 A;  2DCB A;  4BS5 A;  3MOR A;  4HXD B;  3BWK A;  2PNS A;  8PCH A;  2FQ9 A;  4QBB A;  2YJ8 A;  5EGW A;  3E9S A;  3KKU A;  1EWP A;  3BB7 A;  4X6J A;  2B1N A;  2IPP B;  2YJ2 A;  3WXG A;  4BSQ A;  3LXS A;  3P5X A;  4MM3 B;  3H8C A;  3MTN A;  1Y4H A;  3I3T A;  2ARY A;  4CDD B;  1UKF A;  2R9N A;  7PCK A;  4BOP A;  2R6N A;  4PP2 E;  2DC9 A;  5EZS A;  3AI8 A;  3N4C A;  1PPD A;  2NQA A;  3H7D A;  4AXM A;  2GHU A;  2G6D A;  2BU3 A;  4OVZ A;  3V6C A;  4I07 A;  5K16 A;  4OEM A;  4N4Z A;  2OUL A;  2AVW A;  2HH5 A;  1CTE A;  3IUT A;  3HHI A;  2DCD A;  2AGA A;  1PBH A;  1CV8 A;  3E1Z B;  1NLJ A;  1U9W A;  3BY4 A;  1KXR A;  5EF4 A;  2XU3 A;  1GLO A;  3HWN A;  1STF E;  3B21 A;  2CIO A;  1U9Q X;  1AEC A;  3KX1 A;  3V6E A;  4BS6 A;  3O0U A;  1YAL A;  1Y08 A;  1CJL A;  2P0R A;  3P5V A;  4MI7 A;  4K7C A;  2WBF X;  1U9X A;  4CDF B;  4FJC A;  2GFO A;  1QOL A;  2FTD A;  1BP4 A;  1ZCM A;  3PRM A;  1A6R A;  1THE A;  2Y5B A;  1AU3 A;  1PIP A;  6PAD A;  2R9C A;  1KHQ A;  3DF0 A;  3PNR A;  3H6S A;  2HD5 A;  2BTW A;  1S4V A;  1X9Y A;  4G54 A;  2DJF B;  1U9V A;  1U5I A;  2E03 A;  4AXL A;  1IWD A;  4MZO A;  1MS6 A;  1PPO A;  2AUZ A;  1POP A;  1NPZ A;  3TNX A;  3TMP A;  2BTW B;  1PPN A;  1MDW A;  1PCI A;  2JQF R;  3BPM A;  5JA7 A;  4QRX A;  3MHS A;  4CZW A;  2OZ2 A;  1QMY A;  3QT4 A;  5JH3 A;  1NB3 A;  1TLO A;  1M6D A;  5CVN B;  4P16 A;  4BPV A;  3C9E A;  2NQI A;  9PAP A;  2E00 A;  4CDC B;  1DKI A;  1CVZ A;  1BY8 A;  5CHV A;  2HHN A;  4DMY A;  3OF8 A;  1AYW A;  4P6E A;  3F75 A;  4ZUX U;  2AS8 A;  4YYV A;  2DC8 A;  3IFU A;  3PHW A;  2UZJ A;  4FK5 A;  4RF0 A;  1YK8 A;  3OQC A;  1XKG A;  2DOS A;  2HWK A;  5CHT A;  4XUI A;  3PSE A;  2DC6 A;  3CH3 X;  2G7Y A;  4YYS A;  3NHE A;  1CPJ A;  4Q8G A;  1F2C A;  1GEC E;  3C0R A;  2Y6E A;  4P6G A;  4BOS A;  4DMX A;  3U8E A;  2F1G A;  2IBI A;  2E02 A;  4BOU A;  3WXE A;  1PE6 A;  3MJ5 A;  4Q8H A;  4RY2 A;  3PT2 A;  3BCN A;  4OVZ B;  1F2A A;  5EZQ A;  4GUA A;  3MTV A;  1DF0 A;  3PHX A;  2FRA A;  1SNK A;  2R9M A;  1MHW A;  2Z84 A;  4HWY A;  3RNV A;  4RNA A;  5J94 A;  2BDZ A;  4RKX A;  4YVA A;  3W31 A;  3GCB A;  2F7D A;  3O1G A;  2DCC A;  3IEJ A;  4M0W A;  1BQI A;  1ICF A;  4I05 A;  3KFQ A;  2XU4 A;  2P86 A;  3K9M A;  3QJ3 A;  4N79 A;  3CH2 X;  4YYW A;  2FE8 A;  5FPW A;  2XU5 A;  4MZS A;  2AYO A;  4BQV A;  1YVB A;  1PAD A;  2VHS A;  5E6J A;  2PAD A;  1BGO A;  4X6I A;  3N3K A;  1ME3 A;  4ZTB A;  1AIM A;  2C0Y A;  1YK7 A;  3BOW A;  3PW3 A;  1MIR A;  2BDL A;  3BC3 A;  2VHF A;  3IV2 A;  3TRK A;  3WXF A;  4I04 A;  1K3B B;  3IHP A;  3KSE A;  2PRE A;  2DJG B;  3CBJ A;  4YYR A;  3O65 A;  3KWB X;  3PHU A;  1EWL A;  2G8J A;  3PRP A;  2J7Q A;  5KO3 A;  2YJ9 A;  2JRI A;  4D8E A;  2FUD A;  5JZE A;  4PP1 A;  2XU1 A;  3BPF A;  4BOQ A;  1TL9 A;  1SP4 B;  4RF1 A;  4WA6 A;  4YYQ A;  1CSB B;  1KFU L;  1KHP A;  2AYN A;  2AUX A;  3LFY A;  2DC7 A;  4D8B A;  3OIS A;  2DZZ A;  2FO5 A;  4KLB A;  2R9O A;  2JTC A;  3HD3 A;  3S3R A;  4IUM A;  2ACT A;  2DZY A;  2G8E A;  1NQC A;  4QRG A;  2CB5 A;  1ITO A;  3W30 A;  1AU4 A;  2HXZ A;  3KWZ A;  3USV A;  3H8B A;  2DCA A;  2YJC A;  1HUC B;  4BOZ A;  1ATK A;  2OP3 A;  3HHA A;  1GCB A;  5F02 A;  3MHH A;  3RVV A;  4REZ A;  1VJV A;  3OVZ A;  2NQG A;  4XR7 A;  1AU2 A;  1DEU A;  5A24 A;  2PBH A;  1PXV A;  1CB5 A;  4OW0 A;  1AYU A;  4PI3 A;  3IMA A; 
#chains in the Genus database with same CATH homology
 1UKF A;  3TMP A;  2BTW B;  5E6J A;  4BOP A;  4A5U A;  5EZS A;  4P16 A;  4R3D A;  4ZTB A;  1YZB A;  1DKI A;  2BU3 A;  4OVZ A;  2J7Q C;  3IFU A;  3PHW A;  2UZJ A;  4RF0 A;  3OQC A;  3TRK A;  4WUR A;  2DOS A;  2HWK A;  4IP3 A;  3PSE A;  2AGA A;  3O65 A;  3PHU A;  3C0R A;  3BY4 A;  3PRP A;  2J7Q A;  4D8I A;  4BOS A;  2JRI A;  4D8E A;  3MP2 A;  3B21 A;  5JZE A;  3ZNH A;  4BOU A;  4BOQ A;  4RF1 A;  3MJ5 A;  3PT2 A;  4MI7 A;  4D8B A;  4OVZ B;  3BBA A;  5EZQ A;  4GUA A;  4XZX A;  2JTC A;  3MTV A;  4IUM A;  1PVJ A;  3PHX A;  3PRM A;  3W30 A;  2Z84 A;  3RNV A;  4RNA A;  4PT5 A;  4RKX A;  3W31 A;  4BOZ A;  4HXD B;  4M0W A;  3E9S A;  4REZ A;  3BB7 A;  2BTW A;  4OW0 A;  4MM3 B;  2FE8 A;  5KO3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...