3BBAA

Structure of active wild-type prevotella intermedia interpain a cysteine protease
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
246
structure length
246
Chain Sequence
VIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPKTKKGRLITGCVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGTAISADFGNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Prevotella intermedia
publication title A New Autocatalytic Activation Mechanism for Cysteine Proteases Revealed by Prevotella intermedia Interpain A
pubmed doi rcsb
molecule keywords interpain A
total genus 60
structure length 246
sequence length 246
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01640 Peptidase_C10 Peptidase C10 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.50 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3bbaA00
4D8BA 1DKIA 4RKXA 3BBAA 4D8EA 4D8IA 3BB7A 2JTCA 1PVJA 2UZJA
chains in the Genus database with same CATH superfamily
3E9SA 1O0EA 1PPPA 3HHAA 3PDFA 3BOWA 2Y5BA 3B79A 2PREA 3OVZA 1F2CA 2G8JA 1CVZA 4GUAA 1Y4HA 4MZSA 5JH3A 2P86A 1PCIA 2FRQA 1VSNA 3TMPA 2AVWA 5EZQA 3OQCA 2FQ9A 4YYWA 5EF4A 2G8EA 3RNVA 4I07A 1U5IA 2FUDA 5JA7A 1GMYA 1ME3A 5CHTA 1TLOA 4W4UA 1IWDA 2DJGB 1BGOA 1PPNA 3I06A 3U8EA 3QSDA 1K3BB 2JTCA 4OVZB 1DKIA 3CH2X 4Q8GA 4P6GA 4N8WA 4QRGA 1PPOA 1KFXL 3BPFA 1AIMA 3WXEA 1U9VA 1KXRA 1SP4B 3BY4A 2XU5A 1KFUL 4WA6A 4BQVA 4YYRA 2XU1A 1PBHA 2J7QC 2JQGR 3F75A 2E01A 1XKGA 2DC7A 4BOPA 1FH0A 4FK5A 2Y6EA 2GFOA 3KKUA 5CVNB 1MEMA 3AI8A 3PRMA 2BTWB 3V6CA 2CIOA 3LXSA 3PNRA 1Q6KA 2ARYA 3PHXA 3O65A 1PADA 2YJ2A 4X6HA 1U9QX 1YZBA 2G7YA 1YALA 4PP1A 3V6EA 2AYOA 2R9CA 4BPVA 2H7JA 3KW9A 4CDDB 2AUXA 3S3QA 4I05A 4MI7A 1KHPA 3PBHA 1TU6A 3H6SA 4CZWA 4BS6A 1TL9A 2R9MA 4BS5A 1F2BA 1CV8A 5J94A 4IP3A 3MTVA 2C0YA 4MSXA 1X9YA 3BCNA 2P7UA 3ERVA 1MS6A 1MEGA 2YJ8A 3RVXA 4X6IA 6PADA 4PP2E 2G6DA 1ZCMA 1PVJA 2YJCA 2DZZA 4FIPA 2VHFA 4OEMA 4REZA 1NPZA 3HD3A 3H7DA 1PE6A 3P5WA 1PXVA 1UKFA 1THEA 3MTNA 5CVOB 2FT2A 2AIMA 2BDZA 4QBBA 5PADA 3E1ZB 1CQDA 3OVXA 1MIRA 4PT5A 3BBAA 4Q8HA 3H8CA 3QJ3A 3PSEA 4N4ZA 2HWKA 3K9MA 2AGAA 2GHUA 4KLBA 9PAPA 3C9EA 1M6DA 5FPWA 2CB5A 5F02A 2FRAA 4BOZA 1CJLA 3F5VA 1CB5A 4I04A 1JQPA 2HH5A 4P16A 1STFE 3TNXA 1NB3A 4BSQA 3BWKA 1AU4A 4XR7A 3P5UA 5K16A 1NL6A 1GCBA 3S3RA 4BOSA 2PNSA 5E6JA 4W5BA 3RVVA 1GECE 2HD5A 3HHIA 4MZOA 3LFYA 4YYQA 3OISA 2B1NA 3PW3A 3ZNHA 4RNAA 3TRKA 1VJVA 4RF0A 1EWPA 4ZTBA 3CH3X 1DF0A 2BDLA 2B1MA 2FYEA 2PBHA 3IEJA 3KSEA 5CHVA 3P5XA 4QRVA 1CTEA 1U9WA 4OELA 2DC9A 1AYWA 1S4VA 3KFQA 2E00A 3B21A 1ME4A 3ZUAA 3MHSA 4IUMA 3W31A 1U9XA 1CS8A 4ZUXU 2R9NA 8PCHA 2DCAA 4QH6A 4MM3B 4D8IA 3IFUA 4OVZA 2JQFR 1BP4A 4RF1A 1YVBA 3CBKA 2AUZA 2VHSA 1MDWA 3C0RA 4YYUA 1QMYA 3W30A 1CPJA 3KWBX 4DMYA 4R3DA 2OZ2A 1BQIA 1MHWA 2DZYA 4YYVA 3DF0A 3MHHA 1NLJA 3OF8A 3N3KA 3BPMA 3QT4A 1F2AA 1A6RA 2BTWA 2NQAA 3H89A 1POPA 1KHQA 4M0WA 3PHWA 5EZSA 1EF7A 3IOQA 2NQIA 4A5UA 5EGWA 3O0UA 3N4CA 4HWYA 4CDFB 1QDQA 3MORA 4CDEB 4QRXA 1ICFA 4W5CA 4XZXA 2YJ9A 2YJBA 3NHEA 4K7CA 3WXGA 4PI3A 3N3GA 2DCCA 3PT2A 1CSBB 4P6EA 2ATOA 3BC3A 2HXZA 1AU2A 3O1GA 3MJ5A 2UZJA 2AYNA 4BOUA 2E02A 3MP2A 2R6NA 1NB5A 1QXPA 3PHUA 1AYVA 1DEUA 4D8EA 2E03A 3K8UA 2NQGA 2DC6A 4FJCA 1ZIVA 2XU4A 4WURA 2DCDA 3I3TA 4N79A 2IBIA 2ACTA 4YYSA 3IMAA 7PCKA 1AU3A 3KWZA 3PRPA 3P5VA 3IUTA 3H8BA 1AECA 2HHNA 4D8BA 1YT7A 2WBFX 3WXFA 1EWMA 2IPPB 3BB7A 1AU0A 1Y08A 3D6SA 1EWLA 2J7QA 4YVAA 4XUIA 3IHPA 4RKXA 2R9FA 4HXDB 5A24A 3HWNA 3KX1A 4AXMA 2Z84A 2OULA 2F1GA 2P0RA 2OP3A 1AYUA 3USVA 2DC8A 1F29A 2JRIA 4OW0A 1NQCA 4RY2A 1ITOA 4AXLA 2O6XA 1GLOA 2R9OA 1YK8A 2DCBA 3OF9A 5CVMA 3CBJA 2AS8A 1BY8A 4CDCB 2FO5A 1YK7A 1SNKA 4X6JA 1QOLA 5JZEA 3IV2A 1PIPA 1HUCB 4G54A 5KO3A 2DJFB 1EWOA 3K24A 4YV8A 3M99A 2BU3A 1PPDA 4BOQA 2AU1A 4DMXA 2DOSA 2FE8A 3RVWA 2PADA 2FTDA 2F7DA 1ATKA 4PADA 2NQDB 3GCBA 2XU3A
chains in the Genus database with same CATH topology
3E9SA 3MJ5A 1PVJA 2UZJA 4BOUA 4REZA 3MP2A 4GUAA 3PHUA 3B21A 4IUMA 3W31A 1UKFA 4D8EA 3TMPA 5EZQA 3OQCA 4MM3B 4D8IA 3IFUA 4OVZA 4RF1A 4WURA 3RNVA 4PT5A 3BBAA 3C0RA 3PRPA 3W30A 3PSEA 2JTCA 4OVZB 4D8BA 1DKIA 4R3DA 2HWKA 3BB7A 2AGAA 2J7QA 4RKXA 3BY4A 4HXDB 2BTWA 2J7QC 2Z84A 4BOPA 4BOZA 4M0WA 3PHWA 5EZSA 2JRIA 4A5UA 4OW0A 4P16A 3PRMA 2BTWB 4XZXA 3PHXA 3O65A 4BOSA 1YZBA 5JZEA 5E6JA 5KO3A 4MI7A 2BU3A 3ZNHA 4BOQA 4IP3A 3MTVA 2DOSA 3PT2A 2FE8A 4RNAA 3TRKA 4RF0A 4ZTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D8B A;  1DKI A;  4RKX A;  3BBA A;  4D8E A;  4D8I A;  3BB7 A;  2JTC A;  1PVJ A;  2UZJ A; 
#chains in the Genus database with same CATH topology
 3E9S A;  1O0E A;  1PPP A;  3HHA A;  3PDF A;  3BOW A;  2Y5B A;  3B79 A;  2PRE A;  3OVZ A;  1F2C A;  2G8J A;  1CVZ A;  4GUA A;  1Y4H A;  4MZS A;  5JH3 A;  2P86 A;  1PCI A;  2FRQ A;  1VSN A;  3TMP A;  2AVW A;  5EZQ A;  3OQC A;  2FQ9 A;  4YYW A;  5EF4 A;  2G8E A;  3RNV A;  4I07 A;  1U5I A;  2FUD A;  5JA7 A;  1GMY A;  1ME3 A;  5CHT A;  1TLO A;  4W4U A;  1IWD A;  2DJG B;  1BGO A;  1PPN A;  3I06 A;  3U8E A;  3QSD A;  1K3B B;  2JTC A;  4OVZ B;  1DKI A;  3CH2 X;  4Q8G A;  4P6G A;  4N8W A;  4QRG A;  1PPO A;  1KFX L;  3BPF A;  1AIM A;  3WXE A;  1U9V A;  1KXR A;  1SP4 B;  3BY4 A;  2XU5 A;  1KFU L;  4WA6 A;  4BQV A;  4YYR A;  2XU1 A;  1PBH A;  2J7Q C;  2JQG R;  3F75 A;  2E01 A;  1XKG A;  2DC7 A;  4BOP A;  1FH0 A;  4FK5 A;  2Y6E A;  2GFO A;  3KKU A;  5CVN B;  1MEM A;  3AI8 A;  3PRM A;  2BTW B;  3V6C A;  2CIO A;  3LXS A;  3PNR A;  1Q6K A;  2ARY A;  3PHX A;  3O65 A;  1PAD A;  2YJ2 A;  4X6H A;  1U9Q X;  1YZB A;  2G7Y A;  1YAL A;  4PP1 A;  3V6E A;  2AYO A;  2R9C A;  4BPV A;  2H7J A;  3KW9 A;  4CDD B;  2AUX A;  3S3Q A;  4I05 A;  4MI7 A;  1KHP A;  3PBH A;  1TU6 A;  3H6S A;  4CZW A;  4BS6 A;  1TL9 A;  2R9M A;  4BS5 A;  1F2B A;  1CV8 A;  5J94 A;  4IP3 A;  3MTV A;  2C0Y A;  4MSX A;  1X9Y A;  3BCN A;  2P7U A;  3ERV A;  1MS6 A;  1MEG A;  2YJ8 A;  3RVX A;  4X6I A;  6PAD A;  4PP2 E;  2G6D A;  1ZCM A;  1PVJ A;  2YJC A;  2DZZ A;  4FIP A;  2VHF A;  4OEM A;  4REZ A;  1NPZ A;  3HD3 A;  3H7D A;  1PE6 A;  3P5W A;  1PXV A;  1UKF A;  1THE A;  3MTN A;  5CVO B;  2FT2 A;  2AIM A;  2BDZ A;  4QBB A;  5PAD A;  3E1Z B;  1CQD A;  3OVX A;  1MIR A;  4PT5 A;  3BBA A;  4Q8H A;  3H8C A;  3QJ3 A;  3PSE A;  4N4Z A;  2HWK A;  3K9M A;  2AGA A;  2GHU A;  4KLB A;  9PAP A;  3C9E A;  1M6D A;  5FPW A;  2CB5 A;  5F02 A;  2FRA A;  4BOZ A;  1CJL A;  3F5V A;  1CB5 A;  4I04 A;  1JQP A;  2HH5 A;  4P16 A;  1STF E;  3TNX A;  1NB3 A;  4BSQ A;  3BWK A;  1AU4 A;  4XR7 A;  3P5U A;  5K16 A;  1NL6 A;  1GCB A;  3S3R A;  4BOS A;  2PNS A;  5E6J A;  4W5B A;  3RVV A;  1GEC E;  2HD5 A;  3HHI A;  4MZO A;  3LFY A;  4YYQ A;  3OIS A;  2B1N A;  3PW3 A;  3ZNH A;  4RNA A;  3TRK A;  1VJV A;  4RF0 A;  1EWP A;  4ZTB A;  3CH3 X;  1DF0 A;  2BDL A;  2B1M A;  2FYE A;  2PBH A;  3IEJ A;  3KSE A;  5CHV A;  3P5X A;  4QRV A;  1CTE A;  1U9W A;  4OEL A;  2DC9 A;  1AYW A;  1S4V A;  3KFQ A;  2E00 A;  3B21 A;  1ME4 A;  3ZUA A;  3MHS A;  4IUM A;  3W31 A;  1U9X A;  1CS8 A;  4ZUX U;  2R9N A;  8PCH A;  2DCA A;  4QH6 A;  4MM3 B;  4D8I A;  3IFU A;  4OVZ A;  2JQF R;  1BP4 A;  4RF1 A;  1YVB A;  3CBK A;  2AUZ A;  2VHS A;  1MDW A;  3C0R A;  4YYU A;  1QMY A;  3W30 A;  1CPJ A;  3KWB X;  4DMY A;  4R3D A;  2OZ2 A;  1BQI A;  1MHW A;  2DZY A;  4YYV A;  3DF0 A;  3MHH A;  1NLJ A;  3OF8 A;  3N3K A;  3BPM A;  3QT4 A;  1F2A A;  1A6R A;  2BTW A;  2NQA A;  3H89 A;  1POP A;  1KHQ A;  4M0W A;  3PHW A;  5EZS A;  1EF7 A;  3IOQ A;  2NQI A;  4A5U A;  5EGW A;  3O0U A;  3N4C A;  4HWY A;  4CDF B;  1QDQ A;  3MOR A;  4CDE B;  4QRX A;  1ICF A;  4W5C A;  4XZX A;  2YJ9 A;  2YJB A;  3NHE A;  4K7C A;  3WXG A;  4PI3 A;  3N3G A;  2DCC A;  3PT2 A;  1CSB B;  4P6E A;  2ATO A;  3BC3 A;  2HXZ A;  1AU2 A;  3O1G A;  3MJ5 A;  2UZJ A;  2AYN A;  4BOU A;  2E02 A;  3MP2 A;  2R6N A;  1NB5 A;  1QXP A;  3PHU A;  1AYV A;  1DEU A;  4D8E A;  2E03 A;  3K8U A;  2NQG A;  2DC6 A;  4FJC A;  1ZIV A;  2XU4 A;  4WUR A;  2DCD A;  3I3T A;  4N79 A;  2IBI A;  2ACT A;  4YYS A;  3IMA A;  7PCK A;  1AU3 A;  3KWZ A;  3PRP A;  3P5V A;  3IUT A;  3H8B A;  1AEC A;  2HHN A;  4D8B A;  1YT7 A;  2WBF X;  3WXF A;  1EWM A;  2IPP B;  3BB7 A;  1AU0 A;  1Y08 A;  3D6S A;  1EWL A;  2J7Q A;  4YVA A;  4XUI A;  3IHP A;  4RKX A;  2R9F A;  4HXD B;  5A24 A;  3HWN A;  3KX1 A;  4AXM A;  2Z84 A;  2OUL A;  2F1G A;  2P0R A;  2OP3 A;  1AYU A;  3USV A;  2DC8 A;  1F29 A;  2JRI A;  4OW0 A;  1NQC A;  4RY2 A;  1ITO A;  4AXL A;  2O6X A;  1GLO A;  2R9O A;  1YK8 A;  2DCB A;  3OF9 A;  5CVM A;  3CBJ A;  2AS8 A;  1BY8 A;  4CDC B;  2FO5 A;  1YK7 A;  1SNK A;  4X6J A;  1QOL A;  5JZE A;  3IV2 A;  1PIP A;  1HUC B;  4G54 A;  5KO3 A;  2DJF B;  1EWO A;  3K24 A;  4YV8 A;  3M99 A;  2BU3 A;  1PPD A;  4BOQ A;  2AU1 A;  4DMX A;  2DOS A;  2FE8 A;  3RVW A;  2PAD A;  2FTD A;  2F7D A;  1ATK A;  4PAD A;  2NQD B;  3GCB A;  2XU3 A; 
#chains in the Genus database with same CATH homology
 3E9S A;  3MJ5 A;  1PVJ A;  2UZJ A;  4BOU A;  4REZ A;  3MP2 A;  4GUA A;  3PHU A;  3B21 A;  4IUM A;  3W31 A;  1UKF A;  4D8E A;  3TMP A;  5EZQ A;  3OQC A;  4MM3 B;  4D8I A;  3IFU A;  4OVZ A;  4RF1 A;  4WUR A;  3RNV A;  4PT5 A;  3BBA A;  3C0R A;  3PRP A;  3W30 A;  3PSE A;  2JTC A;  4OVZ B;  4D8B A;  1DKI A;  4R3D A;  2HWK A;  3BB7 A;  2AGA A;  2J7Q A;  4RKX A;  3BY4 A;  4HXD B;  2BTW A;  2J7Q C;  2Z84 A;  4BOP A;  4BOZ A;  4M0W A;  3PHW A;  5EZS A;  2JRI A;  4A5U A;  4OW0 A;  4P16 A;  3PRM A;  2BTW B;  4XZX A;  3PHX A;  3O65 A;  4BOS A;  1YZB A;  5JZE A;  5E6J A;  5KO3 A;  4MI7 A;  2BU3 A;  3ZNH A;  4BOQ A;  4IP3 A;  3MTV A;  2DOS A;  3PT2 A;  2FE8 A;  4RNA A;  3TRK A;  4RF0 A;  4ZTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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