3PRPA

Structural analysis of a viral otu domain protease from the crimean-congo hemorrhagic fever virus in complex with human ubiquitin
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
161
structure length
161
Chain Sequence
DFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase
source organism Crimean-congo hemorrhagic fever virus
publication title Structural analysis of a viral ovarian tumor domain protease from the crimean-congo hemorrhagic Fever virus in complex with covalently bonded ubiquitin.
pubmed doi rcsb
molecule keywords L protein
total genus 47
structure length 161
sequence length 161
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3prpA00
5JZEA 3PHXA 3PHUA 3TMPA 3PRMA 4BOZA 3PRPA 4BOSA 4BOUA 3C0RA 3BY4A 4HXDB 4BOPA 3PT2A 4BOQA 3PHWA 3PSEA 3ZNHA
chains in the Genus database with same CATH superfamily
5JZEA 4BS5A 3V6EA 2F7DA 3IV2A 4YVAA 4R3DA 2FT2A 2DCDA 1STFE 3IUTA 1QOLA 1U5IA 4WA6A 1YVBA 4CDDB 3WXGA 7PCKA 2YJCA 4BOSA 3DF0A 3HD3A 1MDWA 4M0WA 4BOZA 4OVZB 4Q8GA 1DF0A 4DMYA 4BOPA 3PT2A 5EGWA 3PSEA 3O65A 2R9CA 5FPWA 2BTWA 2DZZA 3CH3X 4X6IA 3H89A 4G54A 4QH6A 3K9MA 3PHUA 3BBAA 2NQIA 1AU4A 2ARYA 2HXZA 4GUAA 4P6GA 4YYQA 1YK7A 2DOSA 2BTWB 2R9OA 2Z84A 4X6JA 1TLOA 4HXDB 1AECA 1CS8A 2HH5A 6PADA 2OZ2A 4RNAA 3P5VA 2AUXA 2FRQA 1PADA 3F75A 4I07A 3QSDA 1AYUA 1NQCA 2J7QC 3OISA 3MP2A 2JQGR 2YJ8A 3H8CA 3N4CA 1U9QX 2FTDA 5A24A 4PI3A 2BDZA 2UZJA 2F1GA 4YYWA 3KKUA 3F5VA 1S4VA 3D6SA 3H8BA 3BPFA 2JTCA 2Y6EA 5JH3A 1BY8A 1CB5A 1CQDA 2VHFA 2B1NA 2DCBA 1KHQA 3MJ5A 1F2CA 3N3GA 2AUZA 1ZIVA 1AU3A 1M6DA 2XU4A 3M99A 5CVNB 3TNXA 4BSQA 3W31A 1QDQA 2AS8A 4QRVA 1O0EA 3TMPA 1EWOA 3BCNA 1NB5A 1VJVA 2YJ2A 2G8EA 2G6DA 4K7CA 5EZQA 2YJBA 2YJ9A 4N4ZA 2XU1A 4HWYA 5CHTA 1A6RA 1PCIA 1KFXL 3B21A 1UKFA 3BWKA 1GCBA 1ME3A 2PNSA 4RY2A 3MTNA 3PHWA 4YYVA 2E01A 3RVVA 1DEUA 1Q6KA 3PNRA 4ZUXU 1YK8A 1QMYA 1BP4A 3PBHA 4XUIA 4CDEB 3I3TA 3WXFA 1HUCB 4W5BA 3IOQA 1CSBB 2GHUA 4D8IA 1IWDA 2HHNA 1EF7A 4BPVA 4YYUA 2FO5A 1GMYA 2GFOA 4REZA 3RVWA 2HD5A 1TU6A 5K16A 5E6JA 1AYWA 1XKGA 2NQAA 1GECE 4PADA 4X6HA 2JQFR 4XZXA 1NB3A 3OQCA 3BB7A 1PXVA 3MTVA 3BY4A 4A5UA 5JA7A 5EZSA 4FK5A 3BC3A 5CVMA 2OP3A 1EWPA 3IMAA 2IBIA 5F02A 4CDCB 2OULA 1NLJA 2H7JA 3KWBX 2PADA 1PVJA 3RVXA 3WXEA 3KWZA 3PRMA 2FE8A 4I05A 1KXRA 3ZNHA 1ITOA 2AGAA 1POPA 3K8UA 2B1MA 1DKIA 2C0YA 3LFYA 2NQDB 3K24A 2R9MA 4MM3B 4FIPA 1KHPA 1ICFA 1U9VA 9PAPA 3GCBA 5J94A 2G8JA 2DCAA 3AI8A 3TRKA 2CB5A 3HWNA 2IPPB 3KSEA 1PE6A 2R9NA 1PPOA 3KFQA 4YYSA 2XU3A 2AYNA 2AVWA 3P5XA 1NPZA 3N3KA 1AIMA 1PIPA 1NL6A 2CIOA 1MEGA 3CBKA 1ME4A 4N79A 4QBBA 1K3BB 1Y4HA 3OVZA 4YV8A 2DJFB 3H6SA 2AIMA 2AU1A 1MS6A 4W5CA 1EWMA 3C9EA 4OELA 1QXPA 4CZWA 3E9SA 5EF4A 2DZYA 3C0RA 4AXMA 2DJGB 4OW0A 3BPMA 4PT5A 3S3QA 2P7UA 3E1ZB 1CPJA 3O0UA 2WBFX 1F2BA 4AXLA 4MZOA 2PBHA 4P6EA 1U9XA 3V6CA 4Q8HA 2E03A 1YZBA 5PADA 2AYOA 4BS6A 3U8EA 3HHIA 3USVA 1AYVA 4IP3A 2ATOA 4QRGA 3P5UA 3CH2X 4MZSA 3KX1A 2DC9A 2J7QA 2P86A 2VHSA 1EWLA 4BOUA 2FQ9A 1SP4B 3BOWA 1CVZA 4QRXA 4IUMA 4OVZA 4XR7A 3IFUA 1MIRA 4D8EA 1KFUL 1YALA 1BGOA 2O6XA 2FUDA 1X9YA 2R9FA 4KLBA 4BOQA 1CJLA 1VSNA 4P16A 2PREA 4RKXA 1TL9A 4DMXA 2Y5BA 5CVOB 4ZTBA 4W4UA 4PP1A 4FJCA 2R6NA 3HHAA 3LXSA 4MI7A 1FH0A 3NHEA 3H7DA 3MHHA 3MORA 2FYEA 4OEMA 5CHVA 4D8BA 4N8WA 2HWKA 2DC7A 2JRIA 1AU0A 3W30A 3PRPA 1MEMA 2P0RA 1F2AA 1MHWA 2FRAA 2G7YA 3OF8A 8PCHA 2NQGA 4MSXA 1THEA 1AU2A 1PBHA 1PPNA 3OF9A 3ZUAA 2XU5A 3RNVA 3P5WA 3KW9A 3B79A 3PDFA 2DC6A 3MHSA 3O1GA 3QT4A 2E00A 1YT7A 2E02A 3PW3A 4I04A 4YYRA 2BDLA 3CBJA 3OVXA 4RF0A 1SNKA 1BQIA 2DC8A 2DCCA 3IHPA 1CTEA 3IEJA 4BQVA 2BU3A 1PPDA 4PP2E 5KO3A 3QJ3A 3PHXA 1Y08A 2ACTA 1JQPA 1F29A 3I06A 4RF1A 1U9WA 3S3RA 1CV8A 1GLOA 4WURA 4CDFB 1PPPA 1ATKA 1ZCMA 3ERVA
chains in the Genus database with same CATH topology
5JZEA 4P16A 4RKXA 3W31A 3TMPA 3TRKA 4R3DA 4ZTBA 5EZQA 4MI7A 4BOSA 3B21A 1UKFA 4M0WA 4BOZA 4OVZB 4D8BA 4BOPA 2HWKA 3PT2A 3PHWA 3PSEA 3O65A 2JRIA 2BTWA 3W30A 3PRPA 3PHUA 3E9SA 3BBAA 3C0RA 4OW0A 4D8IA 4PT5A 4GUAA 2DOSA 2BTWB 2Z84A 4REZA 4HXDB 5E6JA 4RNAA 4XZXA 3RNVA 1YZBA 3OQCA 3BB7A 3MTVA 3BY4A 2J7QC 4A5UA 3MP2A 5EZSA 4IP3A 4RF0A 2J7QA 2UZJA 1PVJA 4BOUA 2BU3A 2JTCA 3PRMA 2FE8A 4IUMA 4OVZA 3IFUA 3ZNHA 5KO3A 2AGAA 3PHXA 4D8EA 1DKIA 3MJ5A 4RF1A 4MM3B 4WURA 4BOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JZE A;  3PHX A;  3PHU A;  3TMP A;  3PRM A;  4BOZ A;  3PRP A;  4BOS A;  4BOU A;  3C0R A;  3BY4 A;  4HXD B;  4BOP A;  3PT2 A;  4BOQ A;  3PHW A;  3PSE A;  3ZNH A; 
#chains in the Genus database with same CATH topology
 5JZE A;  4BS5 A;  3V6E A;  2F7D A;  3IV2 A;  4YVA A;  4R3D A;  2FT2 A;  2DCD A;  1STF E;  3IUT A;  1QOL A;  1U5I A;  4WA6 A;  1YVB A;  4CDD B;  3WXG A;  7PCK A;  2YJC A;  4BOS A;  3DF0 A;  3HD3 A;  1MDW A;  4M0W A;  4BOZ A;  4OVZ B;  4Q8G A;  1DF0 A;  4DMY A;  4BOP A;  3PT2 A;  5EGW A;  3PSE A;  3O65 A;  2R9C A;  5FPW A;  2BTW A;  2DZZ A;  3CH3 X;  4X6I A;  3H89 A;  4G54 A;  4QH6 A;  3K9M A;  3PHU A;  3BBA A;  2NQI A;  1AU4 A;  2ARY A;  2HXZ A;  4GUA A;  4P6G A;  4YYQ A;  1YK7 A;  2DOS A;  2BTW B;  2R9O A;  2Z84 A;  4X6J A;  1TLO A;  4HXD B;  1AEC A;  1CS8 A;  2HH5 A;  6PAD A;  2OZ2 A;  4RNA A;  3P5V A;  2AUX A;  2FRQ A;  1PAD A;  3F75 A;  4I07 A;  3QSD A;  1AYU A;  1NQC A;  2J7Q C;  3OIS A;  3MP2 A;  2JQG R;  2YJ8 A;  3H8C A;  3N4C A;  1U9Q X;  2FTD A;  5A24 A;  4PI3 A;  2BDZ A;  2UZJ A;  2F1G A;  4YYW A;  3KKU A;  3F5V A;  1S4V A;  3D6S A;  3H8B A;  3BPF A;  2JTC A;  2Y6E A;  5JH3 A;  1BY8 A;  1CB5 A;  1CQD A;  2VHF A;  2B1N A;  2DCB A;  1KHQ A;  3MJ5 A;  1F2C A;  3N3G A;  2AUZ A;  1ZIV A;  1AU3 A;  1M6D A;  2XU4 A;  3M99 A;  5CVN B;  3TNX A;  4BSQ A;  3W31 A;  1QDQ A;  2AS8 A;  4QRV A;  1O0E A;  3TMP A;  1EWO A;  3BCN A;  1NB5 A;  1VJV A;  2YJ2 A;  2G8E A;  2G6D A;  4K7C A;  5EZQ A;  2YJB A;  2YJ9 A;  4N4Z A;  2XU1 A;  4HWY A;  5CHT A;  1A6R A;  1PCI A;  1KFX L;  3B21 A;  1UKF A;  3BWK A;  1GCB A;  1ME3 A;  2PNS A;  4RY2 A;  3MTN A;  3PHW A;  4YYV A;  2E01 A;  3RVV A;  1DEU A;  1Q6K A;  3PNR A;  4ZUX U;  1YK8 A;  1QMY A;  1BP4 A;  3PBH A;  4XUI A;  4CDE B;  3I3T A;  3WXF A;  1HUC B;  4W5B A;  3IOQ A;  1CSB B;  2GHU A;  4D8I A;  1IWD A;  2HHN A;  1EF7 A;  4BPV A;  4YYU A;  2FO5 A;  1GMY A;  2GFO A;  4REZ A;  3RVW A;  2HD5 A;  1TU6 A;  5K16 A;  5E6J A;  1AYW A;  1XKG A;  2NQA A;  1GEC E;  4PAD A;  4X6H A;  2JQF R;  4XZX A;  1NB3 A;  3OQC A;  3BB7 A;  1PXV A;  3MTV A;  3BY4 A;  4A5U A;  5JA7 A;  5EZS A;  4FK5 A;  3BC3 A;  5CVM A;  2OP3 A;  1EWP A;  3IMA A;  2IBI A;  5F02 A;  4CDC B;  2OUL A;  1NLJ A;  2H7J A;  3KWB X;  2PAD A;  1PVJ A;  3RVX A;  3WXE A;  3KWZ A;  3PRM A;  2FE8 A;  4I05 A;  1KXR A;  3ZNH A;  1ITO A;  2AGA A;  1POP A;  3K8U A;  2B1M A;  1DKI A;  2C0Y A;  3LFY A;  2NQD B;  3K24 A;  2R9M A;  4MM3 B;  4FIP A;  1KHP A;  1ICF A;  1U9V A;  9PAP A;  3GCB A;  5J94 A;  2G8J A;  2DCA A;  3AI8 A;  3TRK A;  2CB5 A;  3HWN A;  2IPP B;  3KSE A;  1PE6 A;  2R9N A;  1PPO A;  3KFQ A;  4YYS A;  2XU3 A;  2AYN A;  2AVW A;  3P5X A;  1NPZ A;  3N3K A;  1AIM A;  1PIP A;  1NL6 A;  2CIO A;  1MEG A;  3CBK A;  1ME4 A;  4N79 A;  4QBB A;  1K3B B;  1Y4H A;  3OVZ A;  4YV8 A;  2DJF B;  3H6S A;  2AIM A;  2AU1 A;  1MS6 A;  4W5C A;  1EWM A;  3C9E A;  4OEL A;  1QXP A;  4CZW A;  3E9S A;  5EF4 A;  2DZY A;  3C0R A;  4AXM A;  2DJG B;  4OW0 A;  3BPM A;  4PT5 A;  3S3Q A;  2P7U A;  3E1Z B;  1CPJ A;  3O0U A;  2WBF X;  1F2B A;  4AXL A;  4MZO A;  2PBH A;  4P6E A;  1U9X A;  3V6C A;  4Q8H A;  2E03 A;  1YZB A;  5PAD A;  2AYO A;  4BS6 A;  3U8E A;  3HHI A;  3USV A;  1AYV A;  4IP3 A;  2ATO A;  4QRG A;  3P5U A;  3CH2 X;  4MZS A;  3KX1 A;  2DC9 A;  2J7Q A;  2P86 A;  2VHS A;  1EWL A;  4BOU A;  2FQ9 A;  1SP4 B;  3BOW A;  1CVZ A;  4QRX A;  4IUM A;  4OVZ A;  4XR7 A;  3IFU A;  1MIR A;  4D8E A;  1KFU L;  1YAL A;  1BGO A;  2O6X A;  2FUD A;  1X9Y A;  2R9F A;  4KLB A;  4BOQ A;  1CJL A;  1VSN A;  4P16 A;  2PRE A;  4RKX A;  1TL9 A;  4DMX A;  2Y5B A;  5CVO B;  4ZTB A;  4W4U A;  4PP1 A;  4FJC A;  2R6N A;  3HHA A;  3LXS A;  4MI7 A;  1FH0 A;  3NHE A;  3H7D A;  3MHH A;  3MOR A;  2FYE A;  4OEM A;  5CHV A;  4D8B A;  4N8W A;  2HWK A;  2DC7 A;  2JRI A;  1AU0 A;  3W30 A;  3PRP A;  1MEM A;  2P0R A;  1F2A A;  1MHW A;  2FRA A;  2G7Y A;  3OF8 A;  8PCH A;  2NQG A;  4MSX A;  1THE A;  1AU2 A;  1PBH A;  1PPN A;  3OF9 A;  3ZUA A;  2XU5 A;  3RNV A;  3P5W A;  3KW9 A;  3B79 A;  3PDF A;  2DC6 A;  3MHS A;  3O1G A;  3QT4 A;  2E00 A;  1YT7 A;  2E02 A;  3PW3 A;  4I04 A;  4YYR A;  2BDL A;  3CBJ A;  3OVX A;  4RF0 A;  1SNK A;  1BQI A;  2DC8 A;  2DCC A;  3IHP A;  1CTE A;  3IEJ A;  4BQV A;  2BU3 A;  1PPD A;  4PP2 E;  5KO3 A;  3QJ3 A;  3PHX A;  1Y08 A;  2ACT A;  1JQP A;  1F29 A;  3I06 A;  4RF1 A;  1U9W A;  3S3R A;  1CV8 A;  1GLO A;  4WUR A;  4CDF B;  1PPP A;  1ATK A;  1ZCM A;  3ERV A; 
#chains in the Genus database with same CATH homology
 5JZE A;  4P16 A;  4RKX A;  3W31 A;  3TMP A;  3TRK A;  4R3D A;  4ZTB A;  5EZQ A;  4MI7 A;  4BOS A;  3B21 A;  1UKF A;  4M0W A;  4BOZ A;  4OVZ B;  4D8B A;  4BOP A;  2HWK A;  3PT2 A;  3PHW A;  3PSE A;  3O65 A;  2JRI A;  2BTW A;  3W30 A;  3PRP A;  3PHU A;  3E9S A;  3BBA A;  3C0R A;  4OW0 A;  4D8I A;  4PT5 A;  4GUA A;  2DOS A;  2BTW B;  2Z84 A;  4REZ A;  4HXD B;  5E6J A;  4RNA A;  4XZX A;  3RNV A;  1YZB A;  3OQC A;  3BB7 A;  3MTV A;  3BY4 A;  2J7Q C;  4A5U A;  3MP2 A;  5EZS A;  4IP3 A;  4RF0 A;  2J7Q A;  2UZJ A;  1PVJ A;  4BOU A;  2BU3 A;  2JTC A;  3PRM A;  2FE8 A;  4IUM A;  4OVZ A;  3IFU A;  3ZNH A;  5KO3 A;  2AGA A;  3PHX A;  4D8E A;  1DKI A;  3MJ5 A;  4RF1 A;  4MM3 B;  4WUR A;  4BOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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