4BOPA

Structure of otud1 otu domain
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
149
structure length
149
Chain Sequence
KLALYLAEVEKQDKYLRQRNKYRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSNGHYDAVFD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords OTU DOMAIN-CONTAINING PROTEIN 1
publication title Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis.
pubmed doi rcsb
source organism Homo sapiens
total genus 49
structure length 149
sequence length 149
chains with identical sequence B
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4bopA00
4HXDB 3BY4A 3PSEA 3PHXA 3TMPA 3PRMA 4BOSA 4BOPA 5JZEA 3ZNHA 3PHWA 3PRPA 3PT2A 3C0RA 4BOUA 3PHUA 4BOZA 4BOQA
chains in the Genus database with same CATH superfamily
4PT5A 2PADA 2YJ8A 4N4ZA 3O1GA 1QXPA 5FPWA 4BPVA 4WA6A 3KKUA 4D8EA 2E00A 2R6NA 1AYWA 4BSQA 1O0EA 2FTDA 2E01A 3HD3A 3OVXA 3TRKA 1MIRA 1NL6A 2J7QC 3OF9A 4BOSA 2G8EA 2J7QA 3P5VA 1PE6A 1MHWA 2GFOA 2DOSA 1UKFA 2R9MA 3RVXA 3HWNA 7PCKA 3PSEA 4OVZA 1KHPA 1MEMA 1AU3A 3MP2A 4DMYA 1TLOA 1HUCB 2G7YA 2PNSA 3W31A 1PPPA 9PAPA 3W30A 4OW0A 2DJGB 3WXEA 4RF0A 2R9NA 1PBHA 2WBFX 3TNXA 2FUDA 1IWDA 1AIMA 1MS6A 3WXGA 3PHWA 2GHUA 2P0RA 5JH3A 3IMAA 1PCIA 3NHEA 4PP2E 2XU3A 5E6JA 3M99A 1ZCMA 1TL9A 3WXFA 4MSXA 3IUTA 1NB3A 3C9EA 3QJ3A 2FO5A 1SNKA 1F2AA 2G6DA 3MORA 2OZ2A 3OF8A 2IBIA 3C0RA 3KW9A 3P5WA 2DC7A 4MI7A 1QMYA 3U8EA 1EWOA 4I05A 3F5VA 4MZSA 4ZUXU 3N3KA 4N8WA 3H89A 2Y5BA 1AU0A 2JQGR 1EWLA 4OVZB 4I07A 4QH6A 3GCBA 4P6GA 1STFE 1SP4B 3I06A 1M6DA 2FRQA 1YT7A 3IV2A 4XZXA 2DC9A 2E03A 1JQPA 1Y4HA 1NPZA 2PBHA 5CHVA 3BWKA 5CHTA 3KWBX 3E1ZB 2ARYA 4DMXA 3IFUA 5F02A 2CB5A 2IPPB 5CVOB 2DZYA 4W5BA 4YVAA 6PADA 2DC8A 3H8BA 4XUIA 4CDCB 2HD5A 4YYQA 3PDFA 2NQDB 2FYEA 2HWKA 3K24A 5K16A 1VSNA 3H8CA 1Y08A 2DZZA 2PREA 5CVNB 2HXZA 1POPA 1PADA 2VHFA 4YYWA 5A24A 1X9YA 1DKIA 4W5CA 1KHQA 3AI8A 1PXVA 3BPMA 3RVWA 1KFXL 3CH3X 3MTNA 4YYSA 1KXRA 2R9OA 3B21A 2H7JA 3MTVA 2OULA 4W4UA 3ZUAA 3IOQA 3K9MA 1YK7A 1AU4A 1QDQA 4N79A 1ME4A 3PRMA 3KFQA 1CQDA 3CBJA 4RNAA 2AVWA 3OISA 2AGAA 3KSEA 4MZOA 2E02A 3PT2A 2ATOA 2UZJA 1F2BA 1S4VA 4GUAA 3PRPA 3PHXA 1NLJA 3ZNHA 2FRAA 3H6SA 2XU4A 4AXLA 4FK5A 2XU1A 4QRVA 2HHNA 2VHSA 1CJLA 1CTEA 3O0UA 4HXDB 4CDDB 4XR7A 3K8UA 2R9CA 1CVZA 3KX1A 4FJCA 4YV8A 4QBBA 1GCBA 5KO3A 2AYOA 4PI3A 4D8BA 3P5XA 3V6EA 4ZTBA 4BOPA 1K3BB 2Z84A 4BQVA 2R9FA 1U9WA 2Y6EA 2O6XA 4P16A 5CVMA 5PADA 4YYUA 3V6CA 1ZIVA 1ATKA 2FQ9A 3QT4A 3OVZA 1U9VA 3N4CA 4IP3A 4D8IA 2HH5A 1TU6A 3HHAA 4X6IA 1CV8A 2OP3A 1A6RA 1DEUA 3D6SA 4REZA 4P6EA 1BGOA 3BBAA 3N3GA 2BU3A 3F75A 1DF0A 2YJCA 4PADA 3BCNA 4AXMA 5JZEA 1YALA 2AIMA 2AS8A 4A5UA 2BTWA 5J94A 4BOZA 2JRIA 5EZQA 4K7CA 1AU2A 4QRXA 5JA7A 1BQIA 8PCHA 3MJ5A 4QRGA 4CDFB 3HHIA 3E9SA 1CB5A 1NB5A 4IUMA 2DJFB 1GMYA 4CZWA 1U5IA 2NQIA 2DC6A 1YK8A 1BY8A 4BS5A 3LXSA 2YJ9A 2ACTA 4RF1A 1Q6KA 2JTCA 2P86A 2XU5A 3PNRA 4FIPA 4WURA 3MHSA 1F29A 4Q8GA 4PP1A 2FE8A 3PW3A 2BDLA 4BOUA 3MHHA 4RY2A 3BB7A 4BOQA 1F2CA 2C0YA 3TMPA 2AYNA 4OEMA 1U9QX 1CSBB 2NQAA 1PPNA 3USVA 5EZSA 4YYRA 2B1MA 1ICFA 2BTWB 2G8JA 1EF7A 1YZBA 3CH2X 1CS8A 3S3QA 1KFUL 4CDEB 1ME3A 3QSDA 2AU1A 2CIOA 5EGWA 2DCAA 3CBKA 3RVVA 4X6HA 2F1GA 3H7DA 4I04A 4BS6A 3O65A 5EF4A 1QOLA 3S3RA 4YYVA 3BOWA 1NQCA 2DCDA 1MDWA 3B79A 1CPJA 3KWZA 2AUXA 1EWMA 3OQCA 3BY4A 2FT2A 1PPOA 3RNVA 1AECA 1EWPA 1PPDA 3IEJA 3P5UA 1THEA 4MM3B 1FH0A 2YJ2A 3DF0A 4G54A 1GECE 2P7UA 3PBHA 1VJVA 1PVJA 4RKXA 4M0WA 1ITOA 1BP4A 4HWYA 1XKGA 1PIPA 2JQFR 1AYVA 2B1NA 3BC3A 2DCCA 4R3DA 4KLBA 4OELA 2AUZA 3I3TA 1U9XA 2BDZA 1MEGA 1GLOA 3LFYA 3IHPA 2DCBA 3BPFA 1AYUA 3ERVA 3PHUA 2NQGA 1YVBA 4Q8HA 2YJBA 4X6JA 2F7DA
chains in the Genus database with same CATH topology
4PT5A 3TMPA 5KO3A 4D8BA 4D8EA 4XZXA 4ZTBA 5EZSA 4BOPA 2Z84A 3TRKA 2J7QC 2BTWB 4BOSA 1YZBA 4P16A 2J7QA 2DOSA 3IFUA 1UKFA 4IP3A 4D8IA 3PSEA 3O65A 4OVZA 2HWKA 3MP2A 4REZA 3W31A 3BBAA 3W30A 4OW0A 3BB7A 3OQCA 3BY4A 4RF0A 3RNVA 2BU3A 1DKIA 5JZEA 3PHWA 4MM3B 4A5UA 2BTWA 4BOZA 2JRIA 3B21A 5EZQA 3MTVA 1PVJA 5E6JA 4RKXA 3MJ5A 4M0WA 3PRMA 3E9SA 4RNAA 4IUMA 2AGAA 3PT2A 2UZJA 4GUAA 3PRPA 3C0RA 4R3DA 3PHXA 4RF1A 4MI7A 3ZNHA 2JTCA 3PHUA 4WURA 4OVZB 4HXDB 2FE8A 4BOUA 4BOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HXD B;  3BY4 A;  3PSE A;  3PHX A;  3TMP A;  3PRM A;  4BOS A;  4BOP A;  5JZE A;  3ZNH A;  3PHW A;  3PRP A;  3PT2 A;  3C0R A;  4BOU A;  3PHU A;  4BOZ A;  4BOQ A; 
#chains in the Genus database with same CATH topology
 4PT5 A;  2PAD A;  2YJ8 A;  4N4Z A;  3O1G A;  1QXP A;  5FPW A;  4BPV A;  4WA6 A;  3KKU A;  4D8E A;  2E00 A;  2R6N A;  1AYW A;  4BSQ A;  1O0E A;  2FTD A;  2E01 A;  3HD3 A;  3OVX A;  3TRK A;  1MIR A;  1NL6 A;  2J7Q C;  3OF9 A;  4BOS A;  2G8E A;  2J7Q A;  3P5V A;  1PE6 A;  1MHW A;  2GFO A;  2DOS A;  1UKF A;  2R9M A;  3RVX A;  3HWN A;  7PCK A;  3PSE A;  4OVZ A;  1KHP A;  1MEM A;  1AU3 A;  3MP2 A;  4DMY A;  1TLO A;  1HUC B;  2G7Y A;  2PNS A;  3W31 A;  1PPP A;  9PAP A;  3W30 A;  4OW0 A;  2DJG B;  3WXE A;  4RF0 A;  2R9N A;  1PBH A;  2WBF X;  3TNX A;  2FUD A;  1IWD A;  1AIM A;  1MS6 A;  3WXG A;  3PHW A;  2GHU A;  2P0R A;  5JH3 A;  3IMA A;  1PCI A;  3NHE A;  4PP2 E;  2XU3 A;  5E6J A;  3M99 A;  1ZCM A;  1TL9 A;  3WXF A;  4MSX A;  3IUT A;  1NB3 A;  3C9E A;  3QJ3 A;  2FO5 A;  1SNK A;  1F2A A;  2G6D A;  3MOR A;  2OZ2 A;  3OF8 A;  2IBI A;  3C0R A;  3KW9 A;  3P5W A;  2DC7 A;  4MI7 A;  1QMY A;  3U8E A;  1EWO A;  4I05 A;  3F5V A;  4MZS A;  4ZUX U;  3N3K A;  4N8W A;  3H89 A;  2Y5B A;  1AU0 A;  2JQG R;  1EWL A;  4OVZ B;  4I07 A;  4QH6 A;  3GCB A;  4P6G A;  1STF E;  1SP4 B;  3I06 A;  1M6D A;  2FRQ A;  1YT7 A;  3IV2 A;  4XZX A;  2DC9 A;  2E03 A;  1JQP A;  1Y4H A;  1NPZ A;  2PBH A;  5CHV A;  3BWK A;  5CHT A;  3KWB X;  3E1Z B;  2ARY A;  4DMX A;  3IFU A;  5F02 A;  2CB5 A;  2IPP B;  5CVO B;  2DZY A;  4W5B A;  4YVA A;  6PAD A;  2DC8 A;  3H8B A;  4XUI A;  4CDC B;  2HD5 A;  4YYQ A;  3PDF A;  2NQD B;  2FYE A;  2HWK A;  3K24 A;  5K16 A;  1VSN A;  3H8C A;  1Y08 A;  2DZZ A;  2PRE A;  5CVN B;  2HXZ A;  1POP A;  1PAD A;  2VHF A;  4YYW A;  5A24 A;  1X9Y A;  1DKI A;  4W5C A;  1KHQ A;  3AI8 A;  1PXV A;  3BPM A;  3RVW A;  1KFX L;  3CH3 X;  3MTN A;  4YYS A;  1KXR A;  2R9O A;  3B21 A;  2H7J A;  3MTV A;  2OUL A;  4W4U A;  3ZUA A;  3IOQ A;  3K9M A;  1YK7 A;  1AU4 A;  1QDQ A;  4N79 A;  1ME4 A;  3PRM A;  3KFQ A;  1CQD A;  3CBJ A;  4RNA A;  2AVW A;  3OIS A;  2AGA A;  3KSE A;  4MZO A;  2E02 A;  3PT2 A;  2ATO A;  2UZJ A;  1F2B A;  1S4V A;  4GUA A;  3PRP A;  3PHX A;  1NLJ A;  3ZNH A;  2FRA A;  3H6S A;  2XU4 A;  4AXL A;  4FK5 A;  2XU1 A;  4QRV A;  2HHN A;  2VHS A;  1CJL A;  1CTE A;  3O0U A;  4HXD B;  4CDD B;  4XR7 A;  3K8U A;  2R9C A;  1CVZ A;  3KX1 A;  4FJC A;  4YV8 A;  4QBB A;  1GCB A;  5KO3 A;  2AYO A;  4PI3 A;  4D8B A;  3P5X A;  3V6E A;  4ZTB A;  4BOP A;  1K3B B;  2Z84 A;  4BQV A;  2R9F A;  1U9W A;  2Y6E A;  2O6X A;  4P16 A;  5CVM A;  5PAD A;  4YYU A;  3V6C A;  1ZIV A;  1ATK A;  2FQ9 A;  3QT4 A;  3OVZ A;  1U9V A;  3N4C A;  4IP3 A;  4D8I A;  2HH5 A;  1TU6 A;  3HHA A;  4X6I A;  1CV8 A;  2OP3 A;  1A6R A;  1DEU A;  3D6S A;  4REZ A;  4P6E A;  1BGO A;  3BBA A;  3N3G A;  2BU3 A;  3F75 A;  1DF0 A;  2YJC A;  4PAD A;  3BCN A;  4AXM A;  5JZE A;  1YAL A;  2AIM A;  2AS8 A;  4A5U A;  2BTW A;  5J94 A;  4BOZ A;  2JRI A;  5EZQ A;  4K7C A;  1AU2 A;  4QRX A;  5JA7 A;  1BQI A;  8PCH A;  3MJ5 A;  4QRG A;  4CDF B;  3HHI A;  3E9S A;  1CB5 A;  1NB5 A;  4IUM A;  2DJF B;  1GMY A;  4CZW A;  1U5I A;  2NQI A;  2DC6 A;  1YK8 A;  1BY8 A;  4BS5 A;  3LXS A;  2YJ9 A;  2ACT A;  4RF1 A;  1Q6K A;  2JTC A;  2P86 A;  2XU5 A;  3PNR A;  4FIP A;  4WUR A;  3MHS A;  1F29 A;  4Q8G A;  4PP1 A;  2FE8 A;  3PW3 A;  2BDL A;  4BOU A;  3MHH A;  4RY2 A;  3BB7 A;  4BOQ A;  1F2C A;  2C0Y A;  3TMP A;  2AYN A;  4OEM A;  1U9Q X;  1CSB B;  2NQA A;  1PPN A;  3USV A;  5EZS A;  4YYR A;  2B1M A;  1ICF A;  2BTW B;  2G8J A;  1EF7 A;  1YZB A;  3CH2 X;  1CS8 A;  3S3Q A;  1KFU L;  4CDE B;  1ME3 A;  3QSD A;  2AU1 A;  2CIO A;  5EGW A;  2DCA A;  3CBK A;  3RVV A;  4X6H A;  2F1G A;  3H7D A;  4I04 A;  4BS6 A;  3O65 A;  5EF4 A;  1QOL A;  3S3R A;  4YYV A;  3BOW A;  1NQC A;  2DCD A;  1MDW A;  3B79 A;  1CPJ A;  3KWZ A;  2AUX A;  1EWM A;  3OQC A;  3BY4 A;  2FT2 A;  1PPO A;  3RNV A;  1AEC A;  1EWP A;  1PPD A;  3IEJ A;  3P5U A;  1THE A;  4MM3 B;  1FH0 A;  2YJ2 A;  3DF0 A;  4G54 A;  1GEC E;  2P7U A;  3PBH A;  1VJV A;  1PVJ A;  4RKX A;  4M0W A;  1ITO A;  1BP4 A;  4HWY A;  1XKG A;  1PIP A;  2JQF R;  1AYV A;  2B1N A;  3BC3 A;  2DCC A;  4R3D A;  4KLB A;  4OEL A;  2AUZ A;  3I3T A;  1U9X A;  2BDZ A;  1MEG A;  1GLO A;  3LFY A;  3IHP A;  2DCB A;  3BPF A;  1AYU A;  3ERV A;  3PHU A;  2NQG A;  1YVB A;  4Q8H A;  2YJB A;  4X6J A;  2F7D A; 
#chains in the Genus database with same CATH homology
 4PT5 A;  3TMP A;  5KO3 A;  4D8B A;  4D8E A;  4XZX A;  4ZTB A;  5EZS A;  4BOP A;  2Z84 A;  3TRK A;  2J7Q C;  2BTW B;  4BOS A;  1YZB A;  4P16 A;  2J7Q A;  2DOS A;  3IFU A;  1UKF A;  4IP3 A;  4D8I A;  3PSE A;  3O65 A;  4OVZ A;  2HWK A;  3MP2 A;  4REZ A;  3W31 A;  3BBA A;  3W30 A;  4OW0 A;  3BB7 A;  3OQC A;  3BY4 A;  4RF0 A;  3RNV A;  2BU3 A;  1DKI A;  5JZE A;  3PHW A;  4MM3 B;  4A5U A;  2BTW A;  4BOZ A;  2JRI A;  3B21 A;  5EZQ A;  3MTV A;  1PVJ A;  5E6J A;  4RKX A;  3MJ5 A;  4M0W A;  3PRM A;  3E9S A;  4RNA A;  4IUM A;  2AGA A;  3PT2 A;  2UZJ A;  4GUA A;  3PRP A;  3C0R A;  4R3D A;  3PHX A;  4RF1 A;  4MI7 A;  3ZNH A;  2JTC A;  3PHU A;  4WUR A;  4OVZ B;  4HXD B;  2FE8 A;  4BOU A;  4BOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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