4HXDB

Diversity of ubiquitin and isg15 specificity amongst nairoviruses viral ovarian tumor domain proteases
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
157
structure length
157
Chain Sequence
DFLDSLIWERVVDEQYITNPTFCVSDYFEVIRQPGDGNCFYHSIAELFFDVKTPSSFRKVKEHLQLAAEVYYDTEPEAVGTGISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNSTEQVTAAIKFGPGRVSTALNLMHVGRTHFDALRII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/viral protein
source organism Homo sapiens
publication title Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases.
pubmed doi rcsb
molecule keywords Polyubiquitin-C
total genus 43
structure length 157
sequence length 157
chains with identical sequence D
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4hxdB00
3PHXA 3PRPA 4BOUA 5JZEA 3PT2A 4BOZA 3BY4A 3C0RA 3TMPA 4BOSA 3PSEA 4BOQA 4HXDB 3ZNHA 3PHUA 4BOPA 3PHWA 3PRMA
chains in the Genus database with same CATH superfamily
1MS6A 1YT7A 3PT2A 4CZWA 1KFXL 1VJVA 1F2CA 4OW0A 4RNAA 3TNXA 2E03A 4PT5A 3CBJA 4OVZB 3PDFA 2JTCA 4HWYA 3C9EA 5EGWA 2OULA 4A5UA 3OF8A 2ARYA 1YK8A 2ACTA 1AU2A 1CVZA 1XKGA 2WBFX 3NHEA 4QRXA 2DCCA 3F75A 3OF9A 2FRQA 4N4ZA 2YJ9A 2JRIA 3U8EA 3HWNA 4W5BA 1U9WA 4Q8GA 2AUZA 1YK7A 1KHQA 4M0WA 1JQPA 4W5CA 4HXDB 3W31A 5EF4A 1AU3A 2DJFB 1QDQA 1CPJA 4RF0A 3USVA 2DZZA 3MTVA 2HD5A 2DC8A 3GCBA 1F29A 5JZEA 4PADA 4YYRA 3P5VA 1CS8A 2JQGR 2NQDB 2VHSA 2H7JA 3BWKA 4YYVA 3K9MA 3S3RA 2AYNA 2G7YA 2XU5A 1CJLA 1CV8A 1F2BA 2NQGA 3BC3A 3IMAA 2DCDA 2DOSA 3H89A 1PCIA 2AS8A 2B1MA 2R9MA 4OEMA 2F1GA 4MSXA 4D8EA 4R3DA 3LXSA 2VHFA 1PADA 4DMYA 1STFE 1ZCMA 2O6XA 3PHXA 1MIRA 3W30A 7PCKA 1PPOA 3KFQA 2DZYA 1ICFA 5F02A 2FQ9A 2XU3A 5EZSA 4K7CA 1GLOA 4N8WA 3PHWA 2FYEA 3ZNHA 4QH6A 2R9OA 4BS5A 1BY8A 1AECA 3MHHA 1IWDA 4I04A 3CBKA 4CDFB 1O0EA 2DJGB 1BQIA 1NB3A 3OVZA 3V6CA 2E00A 1PIPA 3TMPA 2DCBA 2DC7A 2CB5A 1NLJA 2YJBA 3BBAA 3LFYA 1YALA 3PW3A 3E1ZB 3IEJA 2AIMA 4XZXA 1DEUA 3OISA 3HHIA 4MZOA 1AU4A 8PCHA 3S3QA 2XU4A 2C0YA 2R9CA 4BPVA 2R6NA 3WXEA 4YYUA 4DMXA 3PSEA 3E9SA 2P86A 1S4VA 3N4CA 1QMYA 2NQAA 3QT4A 1PVJA 3AI8A 4XUIA 1U9VA 2P7UA 5CHVA 2P0RA 4QBBA 2G6DA 4AXMA 1YZBA 4W4UA 2E02A 4FJCA 3RVVA 4AXLA 4D8IA 2AU1A 3WXGA 2PNSA 3DF0A 2FO5A 3BY4A 4ZTBA 4WA6A 2HHNA 3KWZA 4YYQA 2FT2A 2G8JA 1AYUA 2R9FA 4X6IA 2BDZA 3IUTA 3QJ3A 2BTWA 1PE6A 1PBHA 2J7QA 1GMYA 3MP2A 3OQCA 4I05A 5JA7A 3TRKA 1CSBB 4MZSA 9PAPA 5JH3A 1DKIA 4X6HA 3RVWA 1NQCA 4P6EA 3V6EA 1Q6KA 1U5IA 1EF7A 1ME4A 2HWKA 2Y5BA 1KHPA 4GUAA 1PPDA 3HD3A 1NB5A 4BOQA 3KW9A 2BTWB 1PXVA 2E01A 1K3BB 4PI3A 4FIPA 3H7DA 2JQFR 1QXPA 1ITOA 4XR7A 3PHUA 4YV8A 2B1NA 2HXZA 3I3TA 3PBHA 2HH5A 1EWOA 4RF1A 2PREA 3M99A 1VSNA 1U9QX 3H8BA 2J7QC 4REZA 3F5VA 5J94A 2NQIA 3D6SA 3MHSA 4BS6A 3O0UA 3B79A 3KWBX 4OVZA 3N3GA 3CH3X 1GECE 3RNVA 3MJ5A 3OVXA 4QRGA 4YYSA 3WXFA 3H8CA 2OZ2A 3PRMA 3QSDA 1Y4HA 4RY2A 3N3KA 4D8BA 1UKFA 4Q8HA 5CHTA 5CVOB 1QOLA 3IOQA 2AVWA 5FPWA 2G8EA 3BB7A 2XU1A 1SNKA 4WURA 1YVBA 1A6RA 1KXRA 4I07A 4PP2E 3P5UA 1CTEA 4BQVA 1BP4A 4G54A 1CQDA 1PPPA 1ZIVA 1GCBA 1PPNA 2IPPB 5KO3A 4BOUA 4BOZA 3BPMA 1EWMA 3ERVA 3CH2X 1Y08A 2CIOA 2FE8A 1SP4B 2AGAA 4KLBA 1U9XA 4P16A 3HHAA 1POPA 4N79A 3PRPA 3RVXA 2Y6EA 4BOSA 5E6JA 4ZUXU 2GHUA 2F7DA 2OP3A 4CDDB 4IUMA 1F2AA 1AU0A 1AIMA 3P5XA 4CDEB 1AYWA 1CB5A 2YJ8A 3ZUAA 1ATKA 1TU6A 4P6GA 2YJ2A 2FUDA 3BOWA 2Z84A 1DF0A 4PP1A 2ATOA 1MEMA 1TLOA 4QRVA 2IBIA 3I06A 3K8UA 1HUCB 4X6JA 5EZQA 2AUXA 1EWLA 1AYVA 3MTNA 3P5WA 4OELA 3BCNA 3IV2A 2DC6A 2BDLA 2FRAA 2AYOA 3KKUA 1MEGA 1X9YA 4YVAA 1KFUL 3IHPA 2DC9A 4BSQA 2BU3A 4BOPA 2YJCA 2GFOA 3H6SA 2PADA 2FTDA 6PADA 1NPZA 4RKXA 3K24A 4FK5A 2R9NA 1M6DA 3BPFA 3O65A 1THEA 3O1GA 4IP3A 3B21A 1EWPA 3IFUA 2DCAA 3PNRA 3MORA 1MHWA 4YYWA 4CDCB 1MDWA 1BGOA 1ME3A 3C0RA 5PADA 5CVMA 3KSEA 5A24A 3KX1A 4MM3B 1FH0A 1NL6A 1TL9A 5K16A 4MI7A 5CVNB 2UZJA 2PBHA
chains in the Genus database with same CATH topology
2J7QA 4BOUA 3PT2A 5EZSA 4BOZA 3MP2A 3OQCA 4OW0A 4RNAA 3PHWA 3ZNHA 4PT5A 3TRKA 4OVZB 2FE8A 1DKIA 2AGAA 2JTCA 4P16A 4A5UA 2HWKA 3PRPA 4GUAA 4BOSA 3TMPA 5E6JA 4BOQA 2BTWB 3BBAA 4IUMA 2JRIA 3PHUA 4M0WA 4XZXA 2Z84A 4RF1A 4HXDB 3W31A 2J7QC 4REZA 5EZQA 4RF0A 3MTVA 3PSEA 3E9SA 5JZEA 4OVZA 1PVJA 3RNVA 3MJ5A 2BU3A 4BOPA 3PRMA 4D8IA 1YZBA 4D8BA 1UKFA 4RKXA 2DOSA 3BB7A 4WURA 3O65A 4D8EA 4R3DA 3BY4A 4IP3A 3B21A 4ZTBA 3IFUA 3PHXA 3W30A 3C0RA 4MM3B 4MI7A 2UZJA 5KO3A 2BTWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PHX A;  3PRP A;  4BOU A;  5JZE A;  3PT2 A;  4BOZ A;  3BY4 A;  3C0R A;  3TMP A;  4BOS A;  3PSE A;  4BOQ A;  4HXD B;  3ZNH A;  3PHU A;  4BOP A;  3PHW A;  3PRM A; 
#chains in the Genus database with same CATH topology
 1MS6 A;  1YT7 A;  3PT2 A;  4CZW A;  1KFX L;  1VJV A;  1F2C A;  4OW0 A;  4RNA A;  3TNX A;  2E03 A;  4PT5 A;  3CBJ A;  4OVZ B;  3PDF A;  2JTC A;  4HWY A;  3C9E A;  5EGW A;  2OUL A;  4A5U A;  3OF8 A;  2ARY A;  1YK8 A;  2ACT A;  1AU2 A;  1CVZ A;  1XKG A;  2WBF X;  3NHE A;  4QRX A;  2DCC A;  3F75 A;  3OF9 A;  2FRQ A;  4N4Z A;  2YJ9 A;  2JRI A;  3U8E A;  3HWN A;  4W5B A;  1U9W A;  4Q8G A;  2AUZ A;  1YK7 A;  1KHQ A;  4M0W A;  1JQP A;  4W5C A;  4HXD B;  3W31 A;  5EF4 A;  1AU3 A;  2DJF B;  1QDQ A;  1CPJ A;  4RF0 A;  3USV A;  2DZZ A;  3MTV A;  2HD5 A;  2DC8 A;  3GCB A;  1F29 A;  5JZE A;  4PAD A;  4YYR A;  3P5V A;  1CS8 A;  2JQG R;  2NQD B;  2VHS A;  2H7J A;  3BWK A;  4YYV A;  3K9M A;  3S3R A;  2AYN A;  2G7Y A;  2XU5 A;  1CJL A;  1CV8 A;  1F2B A;  2NQG A;  3BC3 A;  3IMA A;  2DCD A;  2DOS A;  3H89 A;  1PCI A;  2AS8 A;  2B1M A;  2R9M A;  4OEM A;  2F1G A;  4MSX A;  4D8E A;  4R3D A;  3LXS A;  2VHF A;  1PAD A;  4DMY A;  1STF E;  1ZCM A;  2O6X A;  3PHX A;  1MIR A;  3W30 A;  7PCK A;  1PPO A;  3KFQ A;  2DZY A;  1ICF A;  5F02 A;  2FQ9 A;  2XU3 A;  5EZS A;  4K7C A;  1GLO A;  4N8W A;  3PHW A;  2FYE A;  3ZNH A;  4QH6 A;  2R9O A;  4BS5 A;  1BY8 A;  1AEC A;  3MHH A;  1IWD A;  4I04 A;  3CBK A;  4CDF B;  1O0E A;  2DJG B;  1BQI A;  1NB3 A;  3OVZ A;  3V6C A;  2E00 A;  1PIP A;  3TMP A;  2DCB A;  2DC7 A;  2CB5 A;  1NLJ A;  2YJB A;  3BBA A;  3LFY A;  1YAL A;  3PW3 A;  3E1Z B;  3IEJ A;  2AIM A;  4XZX A;  1DEU A;  3OIS A;  3HHI A;  4MZO A;  1AU4 A;  8PCH A;  3S3Q A;  2XU4 A;  2C0Y A;  2R9C A;  4BPV A;  2R6N A;  3WXE A;  4YYU A;  4DMX A;  3PSE A;  3E9S A;  2P86 A;  1S4V A;  3N4C A;  1QMY A;  2NQA A;  3QT4 A;  1PVJ A;  3AI8 A;  4XUI A;  1U9V A;  2P7U A;  5CHV A;  2P0R A;  4QBB A;  2G6D A;  4AXM A;  1YZB A;  4W4U A;  2E02 A;  4FJC A;  3RVV A;  4AXL A;  4D8I A;  2AU1 A;  3WXG A;  2PNS A;  3DF0 A;  2FO5 A;  3BY4 A;  4ZTB A;  4WA6 A;  2HHN A;  3KWZ A;  4YYQ A;  2FT2 A;  2G8J A;  1AYU A;  2R9F A;  4X6I A;  2BDZ A;  3IUT A;  3QJ3 A;  2BTW A;  1PE6 A;  1PBH A;  2J7Q A;  1GMY A;  3MP2 A;  3OQC A;  4I05 A;  5JA7 A;  3TRK A;  1CSB B;  4MZS A;  9PAP A;  5JH3 A;  1DKI A;  4X6H A;  3RVW A;  1NQC A;  4P6E A;  3V6E A;  1Q6K A;  1U5I A;  1EF7 A;  1ME4 A;  2HWK A;  2Y5B A;  1KHP A;  4GUA A;  1PPD A;  3HD3 A;  1NB5 A;  4BOQ A;  3KW9 A;  2BTW B;  1PXV A;  2E01 A;  1K3B B;  4PI3 A;  4FIP A;  3H7D A;  2JQF R;  1QXP A;  1ITO A;  4XR7 A;  3PHU A;  4YV8 A;  2B1N A;  2HXZ A;  3I3T A;  3PBH A;  2HH5 A;  1EWO A;  4RF1 A;  2PRE A;  3M99 A;  1VSN A;  1U9Q X;  3H8B A;  2J7Q C;  4REZ A;  3F5V A;  5J94 A;  2NQI A;  3D6S A;  3MHS A;  4BS6 A;  3O0U A;  3B79 A;  3KWB X;  4OVZ A;  3N3G A;  3CH3 X;  1GEC E;  3RNV A;  3MJ5 A;  3OVX A;  4QRG A;  4YYS A;  3WXF A;  3H8C A;  2OZ2 A;  3PRM A;  3QSD A;  1Y4H A;  4RY2 A;  3N3K A;  4D8B A;  1UKF A;  4Q8H A;  5CHT A;  5CVO B;  1QOL A;  3IOQ A;  2AVW A;  5FPW A;  2G8E A;  3BB7 A;  2XU1 A;  1SNK A;  4WUR A;  1YVB A;  1A6R A;  1KXR A;  4I07 A;  4PP2 E;  3P5U A;  1CTE A;  4BQV A;  1BP4 A;  4G54 A;  1CQD A;  1PPP A;  1ZIV A;  1GCB A;  1PPN A;  2IPP B;  5KO3 A;  4BOU A;  4BOZ A;  3BPM A;  1EWM A;  3ERV A;  3CH2 X;  1Y08 A;  2CIO A;  2FE8 A;  1SP4 B;  2AGA A;  4KLB A;  1U9X A;  4P16 A;  3HHA A;  1POP A;  4N79 A;  3PRP A;  3RVX A;  2Y6E A;  4BOS A;  5E6J A;  4ZUX U;  2GHU A;  2F7D A;  2OP3 A;  4CDD B;  4IUM A;  1F2A A;  1AU0 A;  1AIM A;  3P5X A;  4CDE B;  1AYW A;  1CB5 A;  2YJ8 A;  3ZUA A;  1ATK A;  1TU6 A;  4P6G A;  2YJ2 A;  2FUD A;  3BOW A;  2Z84 A;  1DF0 A;  4PP1 A;  2ATO A;  1MEM A;  1TLO A;  4QRV A;  2IBI A;  3I06 A;  3K8U A;  1HUC B;  4X6J A;  5EZQ A;  2AUX A;  1EWL A;  1AYV A;  3MTN A;  3P5W A;  4OEL A;  3BCN A;  3IV2 A;  2DC6 A;  2BDL A;  2FRA A;  2AYO A;  3KKU A;  1MEG A;  1X9Y A;  4YVA A;  1KFU L;  3IHP A;  2DC9 A;  4BSQ A;  2BU3 A;  4BOP A;  2YJC A;  2GFO A;  3H6S A;  2PAD A;  2FTD A;  6PAD A;  1NPZ A;  4RKX A;  3K24 A;  4FK5 A;  2R9N A;  1M6D A;  3BPF A;  3O65 A;  1THE A;  3O1G A;  4IP3 A;  3B21 A;  1EWP A;  3IFU A;  2DCA A;  3PNR A;  3MOR A;  1MHW A;  4YYW A;  4CDC B;  1MDW A;  1BGO A;  1ME3 A;  3C0R A;  5PAD A;  5CVM A;  3KSE A;  5A24 A;  3KX1 A;  4MM3 B;  1FH0 A;  1NL6 A;  1TL9 A;  5K16 A;  4MI7 A;  5CVN B;  2UZJ A;  2PBH A; 
#chains in the Genus database with same CATH homology
 2J7Q A;  4BOU A;  3PT2 A;  5EZS A;  4BOZ A;  3MP2 A;  3OQC A;  4OW0 A;  4RNA A;  3PHW A;  3ZNH A;  4PT5 A;  3TRK A;  4OVZ B;  2FE8 A;  1DKI A;  2AGA A;  2JTC A;  4P16 A;  4A5U A;  2HWK A;  3PRP A;  4GUA A;  4BOS A;  3TMP A;  5E6J A;  4BOQ A;  2BTW B;  3BBA A;  4IUM A;  2JRI A;  3PHU A;  4M0W A;  4XZX A;  2Z84 A;  4RF1 A;  4HXD B;  3W31 A;  2J7Q C;  4REZ A;  5EZQ A;  4RF0 A;  3MTV A;  3PSE A;  3E9S A;  5JZE A;  4OVZ A;  1PVJ A;  3RNV A;  3MJ5 A;  2BU3 A;  4BOP A;  3PRM A;  4D8I A;  1YZB A;  4D8B A;  1UKF A;  4RKX A;  2DOS A;  3BB7 A;  4WUR A;  3O65 A;  4D8E A;  4R3D A;  3BY4 A;  4IP3 A;  3B21 A;  4ZTB A;  3IFU A;  3PHX A;  3W30 A;  3C0R A;  4MM3 B;  4MI7 A;  2UZJ A;  5KO3 A;  2BTW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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