3W30A

Structual basis for the recognition of ubc13 by the shigella flexneri effector ospi
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
192
structure length
192
Chain Sequence
NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ORF169b
publication title Structural Basis for the Recognition of Ubc13 by the Shigella flexneri Effector OspI.
pubmed doi rcsb
source organism Shigella flexneri
molecule tags Immune system
total genus 53
structure length 192
sequence length 192
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-12-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.140 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3w30A00
3W31A 4IP3A 3W30A 3B21A 4XZXA
chains in the Genus database with same CATH superfamily
1KFUL 4DMYA 2F7DA 4KLBA 3V6EA 1MEMA 3IHPA 2YJCA 1AIMA 2PBHA 4DMXA 1A6RA 3BC3A 1U9VA 5J94A 2G8JA 2R9OA 2DCDA 9PAPA 4MZOA 3N3KA 3ERVA 4K7CA 3P5UA 1BY8A 3USVA 2G7YA 1F2BA 4CDFB 3KW9A 4MM3B 3PT2A 1TLOA 2AS8A 2IPPB 1NB5A 1YT7A 3M99A 1Y4HA 4OVZB 3KX1A 3O0UA 1KFXL 3TNXA 3IMAA 4GUAA 1S4VA 3IOQA 3NHEA 6PADA 1THEA 1YALA 2VHFA 4PP1A 2ACTA 1KHQA 1QXPA 1NB3A 2E00A 3BPFA 4X6IA 2BDZA 3V6CA 1CV8A 5CHVA 2NQGA 2OULA 1MEGA 4CDCB 4YYSA 1ME3A 4R3DA 4BOUA 1YK7A 1GECE 2XU1A 5JH3A 4XR7A 2GHUA 4FJCA 2CIOA 5K16A 4CDEB 1ITOA 3HHIA 1VJVA 2E01A 1U5IA 3W30A 3KWZA 1PCIA 3HHAA 1U9WA 2B1MA 4A5UA 1ME4A 4PI3A 4W5CA 4BOPA 4QH6A 4X6JA 2OP3A 3C0RA 1CTEA 2DC6A 3IFUA 4OEMA 3MJ5A 3RNVA 4CZWA 1M6DA 1HUCB 3TMPA 3OVXA 8PCHA 4BQVA 2OZ2A 4PP2E 1AU0A 1AYVA 4W4UA 1PBHA 2E02A 3E9SA 3S3RA 2DOSA 4BSQA 2B1NA 1BQIA 4XUIA 4HWYA 4P16A 3H7DA 4MZSA 1PPNA 3E1ZB 4YYVA 1SNKA 3K9MA 2AUZA 4M0WA 4YYRA 1VSNA 3F75A 2PADA 5EZQA 2FT2A 1AYWA 1AU3A 4G54A 3MHSA 3H6SA 1PVJA 3H89A 4D8BA 3OF9A 2XU4A 3QT4A 2PNSA 4RF0A 3PBHA 3MHHA 3P5XA 5EZSA 4WURA 4RKXA 3N3GA 3WXEA 1BGOA 2AGAA 2FUDA 5JA7A 2J7QA 1U9QX 3CBJA 1FH0A 2HH5A 4YVAA 1O0EA 2AU1A 1Q6KA 3O1GA 3U8EA 2YJBA 4RNAA 4RF1A 3RVWA 4BS6A 3LFYA 4RY2A 4I04A 2HWKA 1NLJA 5EGWA 2R9FA 4IUMA 1MS6A 1CPJA 2R6NA 1UKFA 4AXMA 2Y6EA 4YV8A 3CH2X 2P7UA 2DCAA 4N8WA 2AYNA 2CB5A 4IP3A 3BWKA 3ZUAA 3KSEA 3KKUA 3RVVA 2YJ9A 1IWDA 4I07A 3C9EA 1MHWA 3P5WA 2JRIA 4WA6A 3OF8A 1AYUA 4MI7A 2DZYA 3B21A 1DKIA 1EWPA 2ARYA 3RVXA 1BP4A 1CQDA 1AECA 1CS8A 2YJ8A 2DJFB 3IUTA 3PSEA 4OW0A 4MSXA 2AYOA 2R9CA 3AI8A 2JTCA 2BTWB 4D8IA 1EWOA 1NPZA 4D8EA 4OELA 2DZZA 4QRVA 2FRAA 2HHNA 2XU5A 1CJLA 2PREA 2DC9A 3PDFA 5CVOB 3W31A 5JZEA 2FO5A 3BB7A 4PT5A 5CVMA 3H8BA 3OISA 3PW3A 1TL9A 3S3QA 1F29A 1AU2A 1SP4B 2DCBA 2F1GA 1DEUA 2Y5BA 2ATOA 3ZNHA 3IEJA 3K24A 4Q8HA 1PPPA 4BOSA 3WXGA 4XZXA 1STFE 1EF7A 3OQCA 1MDWA 3I06A 1K3BB 1NL6A 4N79A 1QMYA 1CSBB 5A24A 5PADA 4YYQA 4P6EA 2DCCA 4Q8GA 4AXLA 1CVZA 1EWMA 2P86A 1TU6A 2YJ2A 3MTVA 4I05A 4W5BA 2DC8A 7PCKA 4YYUA 2FRQA 2JQFR 4QRXA 2UZJA 1EWLA 1NQCA 2R9MA 4OVZA 1JQPA 3HWNA 2AVWA 2E03A 4HXDB 4YYWA 2O6XA 2G6DA 1MIRA 4BS5A 4QBBA 3K8UA 1PXVA 2FQ9A 1YVBA 4QRGA 4X6HA 1ICFA 2C0YA 4BPVA 1CB5A 5CVNB 3OVZA 3BCNA 3PNRA 2IBIA 5E6JA 1YK8A 3CH3X 3KFQA 3DF0A 3I3TA 2NQDB 1ZIVA 2BDLA 2JQGR 3GCBA 3H8CA 2J7QC 2Z84A 1POPA 2VHSA 3MTNA 2DJGB 2G8EA 3QSDA 3BBAA 1DF0A 3P5VA 1U9XA 2GFOA 5CHTA 2XU3A 1F2CA 2HD5A 4FIPA 1PE6A 3PHXA 3MORA 1PADA 2AIMA 1GLOA 3PHUA 3O65A 2NQAA 1F2AA 3HD3A 3KWBX 3BOWA 1GCBA 4FK5A 3BY4A 4N4ZA 3WXFA 5EF4A 3LXSA 2AUXA 3PRPA 2FE8A 2FYEA 3MP2A 1KHPA 2BTWA 5KO3A 1YZBA 1GMYA 3B79A 1ZCMA 3PRMA 3D6SA 3TRKA 3F5VA 3CBKA 3N4CA 1Y08A 1AU4A 2NQIA 3IV2A 4REZA 2FTDA 2DC7A 4BOZA 1KXRA 3QJ3A 1PPDA 4ZUXU 1PPOA 2H7JA 3BPMA 2R9NA 4PADA 4CDDB 1QOLA 1X9YA 2WBFX 1ATKA 3PHWA 1PIPA 2HXZA 1XKGA 1QDQA 4ZTBA 5F02A 2P0RA 5FPWA 2BU3A 4P6GA 4BOQA
chains in the Genus database with same CATH topology
2JRIA 4MI7A 3B21A 1DKIA 3E9SA 2DOSA 4P16A 3PSEA 4OW0A 4MM3B 3PT2A 5E6JA 4M0WA 2JTCA 2BTWB 5EZQA 4OVZB 4D8IA 2J7QC 4D8EA 2Z84A 4GUAA 1PVJA 4D8BA 3BBAA 3W31A 4RF0A 5JZEA 5EZSA 4WURA 3PHXA 4RKXA 3BB7A 4PT5A 2AGAA 3PHUA 3O65A 2J7QA 3BY4A 4R3DA 4BOUA 4RNAA 3ZNHA 3PRPA 2FE8A 4RF1A 3MP2A 4BOSA 4XZXA 2BTWA 5KO3A 3OQCA 1YZBA 3PRMA 2HWKA 3TRKA 4IUMA 3W30A 1UKFA 4REZA 4BOZA 4A5UA 4BOPA 3MTVA 3C0RA 3PHWA 4IP3A 3IFUA 2UZJA 3MJ5A 4ZTBA 4OVZA 3RNVA 4HXDB 3TMPA 2BU3A 4BOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W31 A;  4IP3 A;  3W30 A;  3B21 A;  4XZX A; 
#chains in the Genus database with same CATH topology
 1KFU L;  4DMY A;  2F7D A;  4KLB A;  3V6E A;  1MEM A;  3IHP A;  2YJC A;  1AIM A;  2PBH A;  4DMX A;  1A6R A;  3BC3 A;  1U9V A;  5J94 A;  2G8J A;  2R9O A;  2DCD A;  9PAP A;  4MZO A;  3N3K A;  3ERV A;  4K7C A;  3P5U A;  1BY8 A;  3USV A;  2G7Y A;  1F2B A;  4CDF B;  3KW9 A;  4MM3 B;  3PT2 A;  1TLO A;  2AS8 A;  2IPP B;  1NB5 A;  1YT7 A;  3M99 A;  1Y4H A;  4OVZ B;  3KX1 A;  3O0U A;  1KFX L;  3TNX A;  3IMA A;  4GUA A;  1S4V A;  3IOQ A;  3NHE A;  6PAD A;  1THE A;  1YAL A;  2VHF A;  4PP1 A;  2ACT A;  1KHQ A;  1QXP A;  1NB3 A;  2E00 A;  3BPF A;  4X6I A;  2BDZ A;  3V6C A;  1CV8 A;  5CHV A;  2NQG A;  2OUL A;  1MEG A;  4CDC B;  4YYS A;  1ME3 A;  4R3D A;  4BOU A;  1YK7 A;  1GEC E;  2XU1 A;  5JH3 A;  4XR7 A;  2GHU A;  4FJC A;  2CIO A;  5K16 A;  4CDE B;  1ITO A;  3HHI A;  1VJV A;  2E01 A;  1U5I A;  3W30 A;  3KWZ A;  1PCI A;  3HHA A;  1U9W A;  2B1M A;  4A5U A;  1ME4 A;  4PI3 A;  4W5C A;  4BOP A;  4QH6 A;  4X6J A;  2OP3 A;  3C0R A;  1CTE A;  2DC6 A;  3IFU A;  4OEM A;  3MJ5 A;  3RNV A;  4CZW A;  1M6D A;  1HUC B;  3TMP A;  3OVX A;  8PCH A;  4BQV A;  2OZ2 A;  4PP2 E;  1AU0 A;  1AYV A;  4W4U A;  1PBH A;  2E02 A;  3E9S A;  3S3R A;  2DOS A;  4BSQ A;  2B1N A;  1BQI A;  4XUI A;  4HWY A;  4P16 A;  3H7D A;  4MZS A;  1PPN A;  3E1Z B;  4YYV A;  1SNK A;  3K9M A;  2AUZ A;  4M0W A;  4YYR A;  1VSN A;  3F75 A;  2PAD A;  5EZQ A;  2FT2 A;  1AYW A;  1AU3 A;  4G54 A;  3MHS A;  3H6S A;  1PVJ A;  3H89 A;  4D8B A;  3OF9 A;  2XU4 A;  3QT4 A;  2PNS A;  4RF0 A;  3PBH A;  3MHH A;  3P5X A;  5EZS A;  4WUR A;  4RKX A;  3N3G A;  3WXE A;  1BGO A;  2AGA A;  2FUD A;  5JA7 A;  2J7Q A;  1U9Q X;  3CBJ A;  1FH0 A;  2HH5 A;  4YVA A;  1O0E A;  2AU1 A;  1Q6K A;  3O1G A;  3U8E A;  2YJB A;  4RNA A;  4RF1 A;  3RVW A;  4BS6 A;  3LFY A;  4RY2 A;  4I04 A;  2HWK A;  1NLJ A;  5EGW A;  2R9F A;  4IUM A;  1MS6 A;  1CPJ A;  2R6N A;  1UKF A;  4AXM A;  2Y6E A;  4YV8 A;  3CH2 X;  2P7U A;  2DCA A;  4N8W A;  2AYN A;  2CB5 A;  4IP3 A;  3BWK A;  3ZUA A;  3KSE A;  3KKU A;  3RVV A;  2YJ9 A;  1IWD A;  4I07 A;  3C9E A;  1MHW A;  3P5W A;  2JRI A;  4WA6 A;  3OF8 A;  1AYU A;  4MI7 A;  2DZY A;  3B21 A;  1DKI A;  1EWP A;  2ARY A;  3RVX A;  1BP4 A;  1CQD A;  1AEC A;  1CS8 A;  2YJ8 A;  2DJF B;  3IUT A;  3PSE A;  4OW0 A;  4MSX A;  2AYO A;  2R9C A;  3AI8 A;  2JTC A;  2BTW B;  4D8I A;  1EWO A;  1NPZ A;  4D8E A;  4OEL A;  2DZZ A;  4QRV A;  2FRA A;  2HHN A;  2XU5 A;  1CJL A;  2PRE A;  2DC9 A;  3PDF A;  5CVO B;  3W31 A;  5JZE A;  2FO5 A;  3BB7 A;  4PT5 A;  5CVM A;  3H8B A;  3OIS A;  3PW3 A;  1TL9 A;  3S3Q A;  1F29 A;  1AU2 A;  1SP4 B;  2DCB A;  2F1G A;  1DEU A;  2Y5B A;  2ATO A;  3ZNH A;  3IEJ A;  3K24 A;  4Q8H A;  1PPP A;  4BOS A;  3WXG A;  4XZX A;  1STF E;  1EF7 A;  3OQC A;  1MDW A;  3I06 A;  1K3B B;  1NL6 A;  4N79 A;  1QMY A;  1CSB B;  5A24 A;  5PAD A;  4YYQ A;  4P6E A;  2DCC A;  4Q8G A;  4AXL A;  1CVZ A;  1EWM A;  2P86 A;  1TU6 A;  2YJ2 A;  3MTV A;  4I05 A;  4W5B A;  2DC8 A;  7PCK A;  4YYU A;  2FRQ A;  2JQF R;  4QRX A;  2UZJ A;  1EWL A;  1NQC A;  2R9M A;  4OVZ A;  1JQP A;  3HWN A;  2AVW A;  2E03 A;  4HXD B;  4YYW A;  2O6X A;  2G6D A;  1MIR A;  4BS5 A;  4QBB A;  3K8U A;  1PXV A;  2FQ9 A;  1YVB A;  4QRG A;  4X6H A;  1ICF A;  2C0Y A;  4BPV A;  1CB5 A;  5CVN B;  3OVZ A;  3BCN A;  3PNR A;  2IBI A;  5E6J A;  1YK8 A;  3CH3 X;  3KFQ A;  3DF0 A;  3I3T A;  2NQD B;  1ZIV A;  2BDL A;  2JQG R;  3GCB A;  3H8C A;  2J7Q C;  2Z84 A;  1POP A;  2VHS A;  3MTN A;  2DJG B;  2G8E A;  3QSD A;  3BBA A;  1DF0 A;  3P5V A;  1U9X A;  2GFO A;  5CHT A;  2XU3 A;  1F2C A;  2HD5 A;  4FIP A;  1PE6 A;  3PHX A;  3MOR A;  1PAD A;  2AIM A;  1GLO A;  3PHU A;  3O65 A;  2NQA A;  1F2A A;  3HD3 A;  3KWB X;  3BOW A;  1GCB A;  4FK5 A;  3BY4 A;  4N4Z A;  3WXF A;  5EF4 A;  3LXS A;  2AUX A;  3PRP A;  2FE8 A;  2FYE A;  3MP2 A;  1KHP A;  2BTW A;  5KO3 A;  1YZB A;  1GMY A;  3B79 A;  1ZCM A;  3PRM A;  3D6S A;  3TRK A;  3F5V A;  3CBK A;  3N4C A;  1Y08 A;  1AU4 A;  2NQI A;  3IV2 A;  4REZ A;  2FTD A;  2DC7 A;  4BOZ A;  1KXR A;  3QJ3 A;  1PPD A;  4ZUX U;  1PPO A;  2H7J A;  3BPM A;  2R9N A;  4PAD A;  4CDD B;  1QOL A;  1X9Y A;  2WBF X;  1ATK A;  3PHW A;  1PIP A;  2HXZ A;  1XKG A;  1QDQ A;  4ZTB A;  5F02 A;  2P0R A;  5FPW A;  2BU3 A;  4P6G A;  4BOQ A; 
#chains in the Genus database with same CATH homology
 2JRI A;  4MI7 A;  3B21 A;  1DKI A;  3E9S A;  2DOS A;  4P16 A;  3PSE A;  4OW0 A;  4MM3 B;  3PT2 A;  5E6J A;  4M0W A;  2JTC A;  2BTW B;  5EZQ A;  4OVZ B;  4D8I A;  2J7Q C;  4D8E A;  2Z84 A;  4GUA A;  1PVJ A;  4D8B A;  3BBA A;  3W31 A;  4RF0 A;  5JZE A;  5EZS A;  4WUR A;  3PHX A;  4RKX A;  3BB7 A;  4PT5 A;  2AGA A;  3PHU A;  3O65 A;  2J7Q A;  3BY4 A;  4R3D A;  4BOU A;  4RNA A;  3ZNH A;  3PRP A;  2FE8 A;  4RF1 A;  3MP2 A;  4BOS A;  4XZX A;  2BTW A;  5KO3 A;  3OQC A;  1YZB A;  3PRM A;  2HWK A;  3TRK A;  4IUM A;  3W30 A;  1UKF A;  4REZ A;  4BOZ A;  4A5U A;  4BOP A;  3MTV A;  3C0R A;  3PHW A;  4IP3 A;  3IFU A;  2UZJ A;  3MJ5 A;  4ZTB A;  4OVZ A;  3RNV A;  4HXD B;  3TMP A;  2BU3 A;  4BOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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