3W30A

Structual basis for the recognition of ubc13 by the shigella flexneri effector ospi
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
192
structure length
192
Chain Sequence
NVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNASGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Shigella flexneri
publication title Structural Basis for the Recognition of Ubc13 by the Shigella flexneri Effector OspI.
pubmed doi rcsb
molecule keywords ORF169b
total genus 53
structure length 192
sequence length 192
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-12-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.140 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3w30A00
3B21A 3W31A 4IP3A 4XZXA 3W30A
chains in the Genus database with same CATH superfamily
3C9EA 4MSXA 4I07A 4WURA 1KFUL 2CB5A 2R9CA 4HWYA 2DC6A 1EWMA 1U9WA 3MHSA 4QRVA 1F2CA 2YJBA 4OVZA 3CH2X 7PCKA 1VJVA 5CVNB 3S3QA 2ARYA 4YYWA 9PAPA 1IWDA 2DC9A 5EZQA 1DEUA 4PT5A 1MDWA 3LXSA 4YYUA 1XKGA 1ZIVA 4W5CA 2JTCA 4D8BA 2J7QC 4K7CA 6PADA 1UKFA 1DKIA 1NLJA 3ZNHA 1Y4HA 1NQCA 3KX1A 5EGWA 1NPZA 2Z84A 3M99A 1K3BB 4P6GA 3H8CA 1X9YA 3B79A 3OISA 3PRMA 3C0RA 4PADA 3IFUA 1HUCB 3WXGA 2DCCA 3N4CA 3RVXA 4FK5A 2BDZA 2XU4A 5EZSA 5FPWA 1Q6KA 3D6SA 2ACTA 4XUIA 4M0WA 1PPPA 4MI7A 1EWLA 1TL9A 3PNRA 3IV2A 1CQDA 1F2BA 2B1MA 4R3DA 2NQDB 2AUXA 4AXMA 1ICFA 3TNXA 3NHEA 3KWBX 4I05A 2YJ9A 3IUTA 2FE8A 2YJ2A 1JQPA 2AUZA 1MIRA 5F02A 2HHNA 2HD5A 2OP3A 2B1NA 2G8JA 4BOPA 3RVWA 2YJCA 2O6XA 1AYWA 1KHPA 1BGOA 3PHWA 3K9MA 3MP2A 2DCAA 3BPFA 3V6CA 2R9MA 2BU3A 3PRPA 1CSBB 2GFOA 2AVWA 1CTEA 2BDLA 2J7QA 4YYSA 2JQFR 2XU5A 2JQGR 1BQIA 3HHAA 5JH3A 5CVOB 3H89A 1PVJA 2PADA 3OQCA 1CB5A 1YT7A 4RNAA 5KO3A 4MZOA 4CZWA 2R9OA 1O0EA 1AECA 1AYVA 3TRKA 4PP1A 3RNVA 1S4VA 3O0UA 1CPJA 2DZYA 3B21A 1ME3A 4XR7A 2DJFB 2PREA 1PBHA 5JZEA 2HWKA 1CVZA 1F29A 3QT4A 4YYVA 3K8UA 2AYNA 3MTNA 1PIPA 1Y08A 2BTWB 4CDFB 2G7YA 3CBKA 5CHVA 4G54A 1POPA 1KHQA 1MS6A 3MHHA 4OW0A 1A6RA 4KLBA 2WBFX 4A5UA 3W31A 2BTWA 2DC8A 1PADA 3F75A 2FUDA 1EF7A 3CBJA 1TLOA 2GHUA 3BY4A 2FYEA 4XZXA 4MZSA 2E00A 1AU2A 1MEMA 1YK8A 2E03A 3USVA 1KXRA 4FIPA 3PHUA 1AU0A 2G8EA 2F1GA 5EF4A 1PE6A 1MEGA 4BOSA 4BPVA 3P5WA 3WXFA 1YALA 5JA7A 1AYUA 4MM3B 4YV8A 3BB7A 4OEMA 1TU6A 5J94A 4DMYA 1STFE 4WA6A 8PCHA 4CDCB 4RF0A 2R9FA 2R9NA 3S3RA 1THEA 3IOQA 4PP2E 2Y5BA 2Y6EA 1SNKA 2DCBA 2FT2A 1KFXL 1U9XA 2FRQA 2UZJA 1QMYA 2FTDA 1VSNA 3E9SA 3KW9A 3AI8A 2PBHA 2AGAA 3I06A 5CHTA 1PXVA 2DZZA 2NQGA 4P6EA 4YYRA 3K24A 3OF8A 1QXPA 4QBBA 1CJLA 1NB3A 4PI3A 5A24A 2R6NA 4BOUA 4N8WA 3MTVA 3BWKA 3IMAA 1GCBA 1YZBA 3TMPA 4P16A 1YK7A 4BS5A 4QRGA 1EWOA 4ZTBA 3CH3X 3OVZA 4FJCA 4Q8GA 1CV8A 3P5UA 4RKXA 3KKUA 2P7UA 2P86A 4BOZA 1YVBA 2VHFA 2P0RA 1GECE 3KSEA 3N3GA 4IUMA 5CVMA 3WXEA 2ATOA 3PHXA 2CIOA 1F2AA 3BCNA 3HHIA 5PADA 1U9QX 3BOWA 2E02A 3P5VA 3PDFA 3MORA 2XU3A 2YJ8A 1EWPA 4BSQA 4Q8HA 2DOSA 2NQIA 2HH5A 5K16A 3W30A 3H6SA 1NL6A 1AIMA 4BOQA 4QH6A 1DF0A 3KFQA 3OF9A 2NQAA 1ATKA 3RVVA 4ZUXU 2OULA 4N4ZA 2XU1A 4I04A 4QRXA 1QDQA 1MHWA 3IHPA 2AU1A 3ERVA 2FQ9A 3P5XA 3QSDA 2IPPB 2PNSA 4N79A 1GLOA 2H7JA 4W5BA 3DF0A 4RF1A 2FO5A 2DJGB 3BPMA 3F5VA 4HXDB 2FRAA 2F7DA 1PPDA 4IP3A 3ZUAA 3BC3A 4RY2A 4X6HA 1QOLA 4YVAA 1PPOA 3GCBA 1AU3A 1PPNA 1ZCMA 1U9VA 3N3KA 4CDDB 1BP4A 1PCIA 5E6JA 3I3TA 3PSEA 4X6IA 2DCDA 3LFYA 1AU4A 2HXZA 3E1ZB 3O1GA 1BY8A 3U8EA 2JRIA 4AXLA 3H7DA 4BS6A 3PBHA 4D8IA 4OELA 4GUAA 2OZ2A 4DMXA 4CDEB 1NB5A 1GMYA 3PT2A 3PW3A 1SP4B 2AYOA 4REZA 3MJ5A 3HD3A 4W4UA 2DC7A 3V6EA 2IBIA 1ME4A 1FH0A 2AS8A 1U5IA 4BQVA 3H8BA 3HWNA 1M6DA 3KWZA 2E01A 2G6DA 2AIMA 4YYQA 1CS8A 3IEJA 2C0YA 3OVXA 3O65A 3QJ3A 2VHSA 4OVZB 4D8EA 3BBAA 1ITOA 4X6JA
chains in the Genus database with same CATH topology
3E9SA 2UZJA 2J7QA 4WURA 2AGAA 4RF1A 1PVJA 4OVZA 4HXDB 3OQCA 4RNAA 4IP3A 5KO3A 3TRKA 5EZQA 4PT5A 3RNVA 3B21A 4BOUA 4D8BA 2JTCA 2J7QC 3MTVA 5JZEA 2HWKA 1UKFA 1DKIA 3ZNHA 1YZBA 5E6JA 3PSEA 2Z84A 3TMPA 4P16A 2BTWB 4ZTBA 3PRMA 3C0RA 4OW0A 3IFUA 2JRIA 4RKXA 4D8IA 4BOZA 4A5UA 3W31A 2BTWA 5EZSA 4GUAA 4IUMA 3PHXA 4M0WA 3BY4A 4MI7A 3PT2A 4XZXA 4REZA 3MJ5A 4R3DA 3PHUA 2DOSA 4BOSA 3W30A 2FE8A 4BOQA 4MM3B 3BB7A 4BOPA 4RF0A 3PHWA 3MP2A 3O65A 4OVZB 4D8EA 3BBAA 2BU3A 3PRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B21 A;  3W31 A;  4IP3 A;  4XZX A;  3W30 A; 
#chains in the Genus database with same CATH topology
 3C9E A;  4MSX A;  4I07 A;  4WUR A;  1KFU L;  2CB5 A;  2R9C A;  4HWY A;  2DC6 A;  1EWM A;  1U9W A;  3MHS A;  4QRV A;  1F2C A;  2YJB A;  4OVZ A;  3CH2 X;  7PCK A;  1VJV A;  5CVN B;  3S3Q A;  2ARY A;  4YYW A;  9PAP A;  1IWD A;  2DC9 A;  5EZQ A;  1DEU A;  4PT5 A;  1MDW A;  3LXS A;  4YYU A;  1XKG A;  1ZIV A;  4W5C A;  2JTC A;  4D8B A;  2J7Q C;  4K7C A;  6PAD A;  1UKF A;  1DKI A;  1NLJ A;  3ZNH A;  1Y4H A;  1NQC A;  3KX1 A;  5EGW A;  1NPZ A;  2Z84 A;  3M99 A;  1K3B B;  4P6G A;  3H8C A;  1X9Y A;  3B79 A;  3OIS A;  3PRM A;  3C0R A;  4PAD A;  3IFU A;  1HUC B;  3WXG A;  2DCC A;  3N4C A;  3RVX A;  4FK5 A;  2BDZ A;  2XU4 A;  5EZS A;  5FPW A;  1Q6K A;  3D6S A;  2ACT A;  4XUI A;  4M0W A;  1PPP A;  4MI7 A;  1EWL A;  1TL9 A;  3PNR A;  3IV2 A;  1CQD A;  1F2B A;  2B1M A;  4R3D A;  2NQD B;  2AUX A;  4AXM A;  1ICF A;  3TNX A;  3NHE A;  3KWB X;  4I05 A;  2YJ9 A;  3IUT A;  2FE8 A;  2YJ2 A;  1JQP A;  2AUZ A;  1MIR A;  5F02 A;  2HHN A;  2HD5 A;  2OP3 A;  2B1N A;  2G8J A;  4BOP A;  3RVW A;  2YJC A;  2O6X A;  1AYW A;  1KHP A;  1BGO A;  3PHW A;  3K9M A;  3MP2 A;  2DCA A;  3BPF A;  3V6C A;  2R9M A;  2BU3 A;  3PRP A;  1CSB B;  2GFO A;  2AVW A;  1CTE A;  2BDL A;  2J7Q A;  4YYS A;  2JQF R;  2XU5 A;  2JQG R;  1BQI A;  3HHA A;  5JH3 A;  5CVO B;  3H89 A;  1PVJ A;  2PAD A;  3OQC A;  1CB5 A;  1YT7 A;  4RNA A;  5KO3 A;  4MZO A;  4CZW A;  2R9O A;  1O0E A;  1AEC A;  1AYV A;  3TRK A;  4PP1 A;  3RNV A;  1S4V A;  3O0U A;  1CPJ A;  2DZY A;  3B21 A;  1ME3 A;  4XR7 A;  2DJF B;  2PRE A;  1PBH A;  5JZE A;  2HWK A;  1CVZ A;  1F29 A;  3QT4 A;  4YYV A;  3K8U A;  2AYN A;  3MTN A;  1PIP A;  1Y08 A;  2BTW B;  4CDF B;  2G7Y A;  3CBK A;  5CHV A;  4G54 A;  1POP A;  1KHQ A;  1MS6 A;  3MHH A;  4OW0 A;  1A6R A;  4KLB A;  2WBF X;  4A5U A;  3W31 A;  2BTW A;  2DC8 A;  1PAD A;  3F75 A;  2FUD A;  1EF7 A;  3CBJ A;  1TLO A;  2GHU A;  3BY4 A;  2FYE A;  4XZX A;  4MZS A;  2E00 A;  1AU2 A;  1MEM A;  1YK8 A;  2E03 A;  3USV A;  1KXR A;  4FIP A;  3PHU A;  1AU0 A;  2G8E A;  2F1G A;  5EF4 A;  1PE6 A;  1MEG A;  4BOS A;  4BPV A;  3P5W A;  3WXF A;  1YAL A;  5JA7 A;  1AYU A;  4MM3 B;  4YV8 A;  3BB7 A;  4OEM A;  1TU6 A;  5J94 A;  4DMY A;  1STF E;  4WA6 A;  8PCH A;  4CDC B;  4RF0 A;  2R9F A;  2R9N A;  3S3R A;  1THE A;  3IOQ A;  4PP2 E;  2Y5B A;  2Y6E A;  1SNK A;  2DCB A;  2FT2 A;  1KFX L;  1U9X A;  2FRQ A;  2UZJ A;  1QMY A;  2FTD A;  1VSN A;  3E9S A;  3KW9 A;  3AI8 A;  2PBH A;  2AGA A;  3I06 A;  5CHT A;  1PXV A;  2DZZ A;  2NQG A;  4P6E A;  4YYR A;  3K24 A;  3OF8 A;  1QXP A;  4QBB A;  1CJL A;  1NB3 A;  4PI3 A;  5A24 A;  2R6N A;  4BOU A;  4N8W A;  3MTV A;  3BWK A;  3IMA A;  1GCB A;  1YZB A;  3TMP A;  4P16 A;  1YK7 A;  4BS5 A;  4QRG A;  1EWO A;  4ZTB A;  3CH3 X;  3OVZ A;  4FJC A;  4Q8G A;  1CV8 A;  3P5U A;  4RKX A;  3KKU A;  2P7U A;  2P86 A;  4BOZ A;  1YVB A;  2VHF A;  2P0R A;  1GEC E;  3KSE A;  3N3G A;  4IUM A;  5CVM A;  3WXE A;  2ATO A;  3PHX A;  2CIO A;  1F2A A;  3BCN A;  3HHI A;  5PAD A;  1U9Q X;  3BOW A;  2E02 A;  3P5V A;  3PDF A;  3MOR A;  2XU3 A;  2YJ8 A;  1EWP A;  4BSQ A;  4Q8H A;  2DOS A;  2NQI A;  2HH5 A;  5K16 A;  3W30 A;  3H6S A;  1NL6 A;  1AIM A;  4BOQ A;  4QH6 A;  1DF0 A;  3KFQ A;  3OF9 A;  2NQA A;  1ATK A;  3RVV A;  4ZUX U;  2OUL A;  4N4Z A;  2XU1 A;  4I04 A;  4QRX A;  1QDQ A;  1MHW A;  3IHP A;  2AU1 A;  3ERV A;  2FQ9 A;  3P5X A;  3QSD A;  2IPP B;  2PNS A;  4N79 A;  1GLO A;  2H7J A;  4W5B A;  3DF0 A;  4RF1 A;  2FO5 A;  2DJG B;  3BPM A;  3F5V A;  4HXD B;  2FRA A;  2F7D A;  1PPD A;  4IP3 A;  3ZUA A;  3BC3 A;  4RY2 A;  4X6H A;  1QOL A;  4YVA A;  1PPO A;  3GCB A;  1AU3 A;  1PPN A;  1ZCM A;  1U9V A;  3N3K A;  4CDD B;  1BP4 A;  1PCI A;  5E6J A;  3I3T A;  3PSE A;  4X6I A;  2DCD A;  3LFY A;  1AU4 A;  2HXZ A;  3E1Z B;  3O1G A;  1BY8 A;  3U8E A;  2JRI A;  4AXL A;  3H7D A;  4BS6 A;  3PBH A;  4D8I A;  4OEL A;  4GUA A;  2OZ2 A;  4DMX A;  4CDE B;  1NB5 A;  1GMY A;  3PT2 A;  3PW3 A;  1SP4 B;  2AYO A;  4REZ A;  3MJ5 A;  3HD3 A;  4W4U A;  2DC7 A;  3V6E A;  2IBI A;  1ME4 A;  1FH0 A;  2AS8 A;  1U5I A;  4BQV A;  3H8B A;  3HWN A;  1M6D A;  3KWZ A;  2E01 A;  2G6D A;  2AIM A;  4YYQ A;  1CS8 A;  3IEJ A;  2C0Y A;  3OVX A;  3O65 A;  3QJ3 A;  2VHS A;  4OVZ B;  4D8E A;  3BBA A;  1ITO A;  4X6J A; 
#chains in the Genus database with same CATH homology
 3E9S A;  2UZJ A;  2J7Q A;  4WUR A;  2AGA A;  4RF1 A;  1PVJ A;  4OVZ A;  4HXD B;  3OQC A;  4RNA A;  4IP3 A;  5KO3 A;  3TRK A;  5EZQ A;  4PT5 A;  3RNV A;  3B21 A;  4BOU A;  4D8B A;  2JTC A;  2J7Q C;  3MTV A;  5JZE A;  2HWK A;  1UKF A;  1DKI A;  3ZNH A;  1YZB A;  5E6J A;  3PSE A;  2Z84 A;  3TMP A;  4P16 A;  2BTW B;  4ZTB A;  3PRM A;  3C0R A;  4OW0 A;  3IFU A;  2JRI A;  4RKX A;  4D8I A;  4BOZ A;  4A5U A;  3W31 A;  2BTW A;  5EZS A;  4GUA A;  4IUM A;  3PHX A;  4M0W A;  3BY4 A;  4MI7 A;  3PT2 A;  4XZX A;  4REZ A;  3MJ5 A;  4R3D A;  3PHU A;  2DOS A;  4BOS A;  3W30 A;  2FE8 A;  4BOQ A;  4MM3 B;  3BB7 A;  4BOP A;  4RF0 A;  3PHW A;  3MP2 A;  3O65 A;  4OVZ B;  4D8E A;  3BBA A;  2BU3 A;  3PRP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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