2J7QC

Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein m48 in complex with a ubquitin-based suicide substrate
Total Genus 66
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
232
structure length
232
Chain Sequence
MKIVRASRDQSAPVYGPRAGSQCMSNCFTFLHTCYLMGIDPVLDTTSLDAVLDSGARLDAIADEKVKRQALTDHPYRLGTEIPTVIETPAGITGHALSRPFNGTAETQDLGGYKCLGILDFLTYARGKPLPVYIIVTVGVFTRGVIVARGATYVFDPHTTDLSAEAAVYVCDDFTEAISALSFFTEMIGDFYYDAVLVYFTRCRTTLISPSELLVQIMDQYKDPDIDASVMS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEA
publication title Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes
pubmed doi rcsb
source organism Murine cytomegalovirus
total genus 66
structure length 232
sequence length 232
ec nomenclature
pdb deposition date 2006-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.120 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2j7qC00
2J7QA 2J7QC
chains in the Genus database with same CATH superfamily
2DC8A 4BOSA 7PCKA 1EWMA 3KWBX 2IPPB 3IUTA 3N3KA 3H89A 3OF9A 3N3GA 4BOQA 3P5UA 2JQGR 2H7JA 1GECE 1PE6A 3KKUA 3TNXA 4BQVA 1F2BA 2FT2A 2AU1A 1A6RA 1YALA 1CSBB 1CTEA 2DJFB 3LFYA 1HUCB 1STFE 3MP2A 2G8JA 4X6JA 1AU3A 4WURA 3OQCA 1AECA 4HWYA 1CPJA 3MHSA 1PPPA 1YT7A 2R9CA 4IP3A 2P7UA 1O0EA 3W30A 2DJGB 4BPVA 1ME3A 2CIOA 2NQAA 1PPNA 3D6SA 4OELA 3PHWA 4FJCA 3BY4A 4G54A 4YYRA 4QH6A 2HWKA 2F7DA 2YJ9A 1GLOA 4RF0A 1ME4A 3K9MA 4PADA 3BCNA 3ERVA 2R9FA 3KW9A 1VJVA 2Z84A 2BU3A 3KWZA 4XR7A 1U9WA 4AXMA 5KO3A 3OISA 2XU3A 1X9YA 3B21A 4BOPA 3B79A 3H8CA 4ZTBA 3V6CA 2HXZA 4BSQA 3BOWA 1MDWA 1CV8A 3LXSA 3P5VA 1CB5A 9PAPA 1AU0A 4W4UA 4M0WA 2AGAA 4YYUA 3PNRA 1EWOA 4FK5A 2B1MA 1F2CA 5E6JA 1PBHA 2DOSA 1ZIVA 3PBHA 1CS8A 4OW0A 3S3RA 1U9XA 2NQDB 3KX1A 2ACTA 3E9SA 3PW3A 2F1GA 4RY2A 1BY8A 1Y4HA 2FRAA 1NB3A 1QDQA 4W5BA 4QRXA 3O0UA 1CQDA 3RNVA 4P16A 1DF0A 3C0RA 2YJCA 2G6DA 3MORA 4I04A 3MTVA 4R3DA 5JH3A 4X6IA 1AU2A 2AVWA 1VSNA 3E1ZB 1IWDA 3HHAA 3O1GA 1YK8A 1PPOA 3ZNHA 1KHQA 3CBKA 3DF0A 1ICFA 2XU4A 2AIMA 1U9QX 3WXEA 2JQFR 2CB5A 2XU1A 4MI7A 4CDFB 4YYVA 4PP2E 2AYOA 4N8WA 4MZOA 1AYVA 2DC9A 2BDLA 3CH3X 1SNKA 2WBFX 1F2AA 4MM3B 4Q8HA 1NLJA 2FE8A 2ARYA 4YV8A 2G7YA 1AU4A 3NHEA 1F29A 1U9VA 4D8EA 2FRQA 4I07A 3BBAA 4PI3A 4WA6A 4CDDB 5EGWA 3MHHA 5CVOB 1AYWA 2FQ9A 1S4VA 1UKFA 4PT5A 3ZUAA 6PADA 1BGOA 2FTDA 1BP4A 4QRGA 4RF1A 2DCCA 3PRMA 1ATKA 1GCBA 1AYUA 1TL9A 2P0RA 3IFUA 3IHPA 4QBBA 5CHVA 3HD3A 3KFQA 2Y6EA 2DCBA 3WXFA 5CHTA 2NQGA 4OEMA 3IOQA 4GUAA 4PP1A 3IEJA 4CZWA 3MJ5A 2FO5A 2E03A 2G8EA 1DKIA 3H6SA 1GMYA 1PPDA 4DMYA 4OVZA 3IMAA 2YJ2A 1MEMA 3K8UA 5EF4A 1QOLA 1EF7A 4D8IA 5JA7A 3PDFA 3PSEA 1Q6KA 4BOUA 4HXDB 4Q8GA 2R6NA 4RKXA 1KFUL 1KHPA 1SP4B 4CDEB 1Y08A 1TU6A 2GFOA 1EWPA 2R9MA 3PT2A 2R9NA 2BTWA 5F02A 1DEUA 1MEGA 3M99A 1EWLA 2BDZA 5EZQA 1KXRA 2IBIA 4MSXA 3QSDA 3H8BA 3S3QA 2E02A 4YYSA 2AUZA 4D8BA 1YK7A 2HHNA 3OVXA 3IV2A 3QJ3A 4QRVA 3CH2X 4OVZB 4K7CA 3U8EA 3OVZA 2O6XA 3AI8A 3WXGA 3BPFA 1XKGA 3V6EA 4MZSA 3TRKA 2B1NA 2VHFA 3TMPA 1JQPA 3CBJA 4W5CA 1CVZA 3P5XA 4ZUXU 2YJBA 3HHIA 1CJLA 3H7DA 2C0YA 4BOZA 1ITOA 2BTWB 4FIPA 2DCAA 3PHUA 3W31A 1QXPA 2YJ8A 3RVVA 1FH0A 2HD5A 4YYWA 3PRPA 2AS8A 4BS6A 1PADA 1POPA 3K24A 2DCDA 4RNAA 4AXLA 2XU5A 2AYNA 2DC7A 2GHUA 3RVXA 1NPZA 4A5UA 1QMYA 1TLOA 2OULA 1MHWA 2UZJA 4YVAA 5J94A 3F75A 4N4ZA 3I3TA 2Y5BA 5CVNB 2PADA 1NL6A 5FPWA 5K16A 4DMXA 4YYQA 2E00A 3BB7A 5A24A 1BQIA 2AUXA 4IUMA 8PCHA 2NQIA 2DZYA 3C9EA 3PHXA 1PIPA 4XUIA 1THEA 3GCBA 3I06A 5EZSA 1MIRA 2ATOA 1M6DA 1YVBA 4CDCB 3BWKA 2DC6A 1K3BB 3OF8A 3F5VA 3O65A 2DZZA 2JRIA 3RVWA 3MTNA 5PADA 4I05A 4N79A 4P6EA 2PNSA 2OZ2A 1PVJA 4XZXA 1YZBA 4KLBA 4X6HA 1PXVA 2JTCA 3N4CA 2P86A 2FUDA 1AIMA 2E01A 4REZA 1PCIA 3QT4A 1MS6A 1U5IA 2J7QC 2FYEA 2HH5A 2VHSA 3BPMA 5JZEA 3BC3A 2J7QA 1NB5A 1KFXL 1ZCMA 3HWNA 2R9OA 4BS5A 2PREA 3KSEA 3P5WA 1NQCA 2OP3A 3USVA 4P6GA 5CVMA 2PBHA
chains in the Genus database with same CATH topology
5E6JA 4BOSA 4RF1A 2DOSA 3PRMA 4BOZA 3IFUA 4BOQA 2BTWB 4OW0A 3PHUA 3W31A 3E9SA 3PRPA 4GUAA 4RNAA 3MJ5A 3MP2A 3RNVA 1DKIA 4A5UA 4WURA 2UZJA 3OQCA 4P16A 4OVZA 3C0RA 3MTVA 4IP3A 4R3DA 4D8IA 3BB7A 3PSEA 4BOUA 4IUMA 4HXDB 3W30A 4RKXA 3PHXA 3ZNHA 5EZSA 3PHWA 3BY4A 3PT2A 2HWKA 2BTWA 3O65A 2JRIA 4RF0A 4MI7A 2Z84A 2BU3A 5EZQA 1PVJA 4XZXA 5KO3A 1YZBA 3B21A 4MM3B 4BOPA 4D8BA 2JTCA 4ZTBA 2FE8A 4REZA 4OVZB 4D8EA 2J7QC 4M0WA 3BBAA 2AGAA 5JZEA 2J7QA 3TRKA 3TMPA 1UKFA 4PT5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J7Q A;  2J7Q C; 
#chains in the Genus database with same CATH topology
 2DC8 A;  4BOS A;  7PCK A;  1EWM A;  3KWB X;  2IPP B;  3IUT A;  3N3K A;  3H89 A;  3OF9 A;  3N3G A;  4BOQ A;  3P5U A;  2JQG R;  2H7J A;  1GEC E;  1PE6 A;  3KKU A;  3TNX A;  4BQV A;  1F2B A;  2FT2 A;  2AU1 A;  1A6R A;  1YAL A;  1CSB B;  1CTE A;  2DJF B;  3LFY A;  1HUC B;  1STF E;  3MP2 A;  2G8J A;  4X6J A;  1AU3 A;  4WUR A;  3OQC A;  1AEC A;  4HWY A;  1CPJ A;  3MHS A;  1PPP A;  1YT7 A;  2R9C A;  4IP3 A;  2P7U A;  1O0E A;  3W30 A;  2DJG B;  4BPV A;  1ME3 A;  2CIO A;  2NQA A;  1PPN A;  3D6S A;  4OEL A;  3PHW A;  4FJC A;  3BY4 A;  4G54 A;  4YYR A;  4QH6 A;  2HWK A;  2F7D A;  2YJ9 A;  1GLO A;  4RF0 A;  1ME4 A;  3K9M A;  4PAD A;  3BCN A;  3ERV A;  2R9F A;  3KW9 A;  1VJV A;  2Z84 A;  2BU3 A;  3KWZ A;  4XR7 A;  1U9W A;  4AXM A;  5KO3 A;  3OIS A;  2XU3 A;  1X9Y A;  3B21 A;  4BOP A;  3B79 A;  3H8C A;  4ZTB A;  3V6C A;  2HXZ A;  4BSQ A;  3BOW A;  1MDW A;  1CV8 A;  3LXS A;  3P5V A;  1CB5 A;  9PAP A;  1AU0 A;  4W4U A;  4M0W A;  2AGA A;  4YYU A;  3PNR A;  1EWO A;  4FK5 A;  2B1M A;  1F2C A;  5E6J A;  1PBH A;  2DOS A;  1ZIV A;  3PBH A;  1CS8 A;  4OW0 A;  3S3R A;  1U9X A;  2NQD B;  3KX1 A;  2ACT A;  3E9S A;  3PW3 A;  2F1G A;  4RY2 A;  1BY8 A;  1Y4H A;  2FRA A;  1NB3 A;  1QDQ A;  4W5B A;  4QRX A;  3O0U A;  1CQD A;  3RNV A;  4P16 A;  1DF0 A;  3C0R A;  2YJC A;  2G6D A;  3MOR A;  4I04 A;  3MTV A;  4R3D A;  5JH3 A;  4X6I A;  1AU2 A;  2AVW A;  1VSN A;  3E1Z B;  1IWD A;  3HHA A;  3O1G A;  1YK8 A;  1PPO A;  3ZNH A;  1KHQ A;  3CBK A;  3DF0 A;  1ICF A;  2XU4 A;  2AIM A;  1U9Q X;  3WXE A;  2JQF R;  2CB5 A;  2XU1 A;  4MI7 A;  4CDF B;  4YYV A;  4PP2 E;  2AYO A;  4N8W A;  4MZO A;  1AYV A;  2DC9 A;  2BDL A;  3CH3 X;  1SNK A;  2WBF X;  1F2A A;  4MM3 B;  4Q8H A;  1NLJ A;  2FE8 A;  2ARY A;  4YV8 A;  2G7Y A;  1AU4 A;  3NHE A;  1F29 A;  1U9V A;  4D8E A;  2FRQ A;  4I07 A;  3BBA A;  4PI3 A;  4WA6 A;  4CDD B;  5EGW A;  3MHH A;  5CVO B;  1AYW A;  2FQ9 A;  1S4V A;  1UKF A;  4PT5 A;  3ZUA A;  6PAD A;  1BGO A;  2FTD A;  1BP4 A;  4QRG A;  4RF1 A;  2DCC A;  3PRM A;  1ATK A;  1GCB A;  1AYU A;  1TL9 A;  2P0R A;  3IFU A;  3IHP A;  4QBB A;  5CHV A;  3HD3 A;  3KFQ A;  2Y6E A;  2DCB A;  3WXF A;  5CHT A;  2NQG A;  4OEM A;  3IOQ A;  4GUA A;  4PP1 A;  3IEJ A;  4CZW A;  3MJ5 A;  2FO5 A;  2E03 A;  2G8E A;  1DKI A;  3H6S A;  1GMY A;  1PPD A;  4DMY A;  4OVZ A;  3IMA A;  2YJ2 A;  1MEM A;  3K8U A;  5EF4 A;  1QOL A;  1EF7 A;  4D8I A;  5JA7 A;  3PDF A;  3PSE A;  1Q6K A;  4BOU A;  4HXD B;  4Q8G A;  2R6N A;  4RKX A;  1KFU L;  1KHP A;  1SP4 B;  4CDE B;  1Y08 A;  1TU6 A;  2GFO A;  1EWP A;  2R9M A;  3PT2 A;  2R9N A;  2BTW A;  5F02 A;  1DEU A;  1MEG A;  3M99 A;  1EWL A;  2BDZ A;  5EZQ A;  1KXR A;  2IBI A;  4MSX A;  3QSD A;  3H8B A;  3S3Q A;  2E02 A;  4YYS A;  2AUZ A;  4D8B A;  1YK7 A;  2HHN A;  3OVX A;  3IV2 A;  3QJ3 A;  4QRV A;  3CH2 X;  4OVZ B;  4K7C A;  3U8E A;  3OVZ A;  2O6X A;  3AI8 A;  3WXG A;  3BPF A;  1XKG A;  3V6E A;  4MZS A;  3TRK A;  2B1N A;  2VHF A;  3TMP A;  1JQP A;  3CBJ A;  4W5C A;  1CVZ A;  3P5X A;  4ZUX U;  2YJB A;  3HHI A;  1CJL A;  3H7D A;  2C0Y A;  4BOZ A;  1ITO A;  2BTW B;  4FIP A;  2DCA A;  3PHU A;  3W31 A;  1QXP A;  2YJ8 A;  3RVV A;  1FH0 A;  2HD5 A;  4YYW A;  3PRP A;  2AS8 A;  4BS6 A;  1PAD A;  1POP A;  3K24 A;  2DCD A;  4RNA A;  4AXL A;  2XU5 A;  2AYN A;  2DC7 A;  2GHU A;  3RVX A;  1NPZ A;  4A5U A;  1QMY A;  1TLO A;  2OUL A;  1MHW A;  2UZJ A;  4YVA A;  5J94 A;  3F75 A;  4N4Z A;  3I3T A;  2Y5B A;  5CVN B;  2PAD A;  1NL6 A;  5FPW A;  5K16 A;  4DMX A;  4YYQ A;  2E00 A;  3BB7 A;  5A24 A;  1BQI A;  2AUX A;  4IUM A;  8PCH A;  2NQI A;  2DZY A;  3C9E A;  3PHX A;  1PIP A;  4XUI A;  1THE A;  3GCB A;  3I06 A;  5EZS A;  1MIR A;  2ATO A;  1M6D A;  1YVB A;  4CDC B;  3BWK A;  2DC6 A;  1K3B B;  3OF8 A;  3F5V A;  3O65 A;  2DZZ A;  2JRI A;  3RVW A;  3MTN A;  5PAD A;  4I05 A;  4N79 A;  4P6E A;  2PNS A;  2OZ2 A;  1PVJ A;  4XZX A;  1YZB A;  4KLB A;  4X6H A;  1PXV A;  2JTC A;  3N4C A;  2P86 A;  2FUD A;  1AIM A;  2E01 A;  4REZ A;  1PCI A;  3QT4 A;  1MS6 A;  1U5I A;  2J7Q C;  2FYE A;  2HH5 A;  2VHS A;  3BPM A;  5JZE A;  3BC3 A;  2J7Q A;  1NB5 A;  1KFX L;  1ZCM A;  3HWN A;  2R9O A;  4BS5 A;  2PRE A;  3KSE A;  3P5W A;  1NQC A;  2OP3 A;  3USV A;  4P6G A;  5CVM A;  2PBH A; 
#chains in the Genus database with same CATH homology
 5E6J A;  4BOS A;  4RF1 A;  2DOS A;  3PRM A;  4BOZ A;  3IFU A;  4BOQ A;  2BTW B;  4OW0 A;  3PHU A;  3W31 A;  3E9S A;  3PRP A;  4GUA A;  4RNA A;  3MJ5 A;  3MP2 A;  3RNV A;  1DKI A;  4A5U A;  4WUR A;  2UZJ A;  3OQC A;  4P16 A;  4OVZ A;  3C0R A;  3MTV A;  4IP3 A;  4R3D A;  4D8I A;  3BB7 A;  3PSE A;  4BOU A;  4IUM A;  4HXD B;  3W30 A;  4RKX A;  3PHX A;  3ZNH A;  5EZS A;  3PHW A;  3BY4 A;  3PT2 A;  2HWK A;  2BTW A;  3O65 A;  2JRI A;  4RF0 A;  4MI7 A;  2Z84 A;  2BU3 A;  5EZQ A;  1PVJ A;  4XZX A;  5KO3 A;  1YZB A;  3B21 A;  4MM3 B;  4BOP A;  4D8B A;  2JTC A;  4ZTB A;  2FE8 A;  4REZ A;  4OVZ B;  4D8E A;  2J7Q C;  4M0W A;  3BBA A;  2AGA A;  5JZE A;  2J7Q A;  3TRK A;  3TMP A;  1UKF A;  4PT5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...