2J7QA

Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein m48 in complex with a ubquitin-based suicide substrate
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
232
structure length
232
Chain Sequence
MKIVRASRDQSAPVYGPRAGSQCMSNCFTFLHTCYLMGIDPVLDTTSLDAVLDSGARLDAIADEKVKRQALTDHPYRLGTEIPTVIETPAGITGHALSRPFNGTAETQDLGGYKCLGILDFLTYARGKPLPVYIIVTVGVHTRGVIVARGATYVFDPHTTDLSAEAAVYVCDDFTEAISALSFFTEMIGDFYYDAVLVYFTRCRTTLISPSELLVQIMDQYKDPDIDASVMS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Murine cytomegalovirus
publication title Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes
pubmed doi rcsb
molecule keywords MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEA
total genus 69
structure length 232
sequence length 232
ec nomenclature
pdb deposition date 2006-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.120 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2j7qA00
2J7QC 2J7QA
chains in the Genus database with same CATH superfamily
3F5VA 1M6DA 3CH3X 2BTWB 4YYSA 1JQPA 1U9WA 4X6IA 3OVXA 1MEGA 2F1GA 2P0RA 2G8JA 1CV8A 3WXGA 1Y08A 4M0WA 3E9SA 3OQCA 1Q6KA 3OF9A 1F2CA 4PP2E 1DKIA 3HHIA 1VSNA 4PI3A 1X9YA 3V6EA 1ZCMA 1AU3A 4RF1A 1CPJA 3MHHA 4YYWA 2HH5A 2DC7A 5EF4A 3TRKA 3HHAA 2J7QC 1STFE 5CHVA 3I3TA 1KFUL 3PSEA 2BDLA 3W31A 3MTNA 3V6CA 1THEA 4BOUA 3S3QA 1A6RA 2B1NA 2IPPB 1QOLA 3F75A 3OVZA 3MTVA 1UKFA 1EWOA 2XU5A 4RNAA 1MS6A 4AXMA 3WXFA 1ZIVA 2OP3A 4X6HA 1NB5A 3ERVA 3IMAA 3OISA 4GUAA 2FTDA 3BC3A 3BPFA 3M99A 3H89A 4HXDB 3MP2A 2YJ8A 2CB5A 4P16A 1SNKA 3U8EA 2G6DA 2DJFB 1ME4A 2AUZA 2FYEA 3TMPA 4BOSA 4W5BA 4IUMA 2Y6EA 4BS6A 5KO3A 1Y4HA 2XU1A 4YVAA 1PCIA 4FK5A 4QRGA 1K3BB 4I07A 3CBJA 1AYWA 1VJVA 1MIRA 2YJ2A 2WBFX 3N3GA 2YJ9A 1QDQA 1BQIA 3K9MA 3RNVA 2BTWA 2O6XA 1YZBA 2BU3A 4YYRA 1ICFA 3ZNHA 1GLOA 3LFYA 3KFQA 3PRPA 4YYQA 4REZA 3RVXA 3PNRA 1CJLA 2JQFR 3CBKA 2IBIA 2BDZA 2JTCA 1AYUA 1YK8A 4RKXA 4BQVA 1IWDA 3GCBA 1CSBB 3N4CA 4N8WA 1CS8A 2NQAA 3BWKA 2OZ2A 3P5VA 2GHUA 4RF0A 1YK7A 3DF0A 5EZQA 4PP1A 3H8CA 1XKGA 2HWKA 2FRAA 4IP3A 2AYOA 4D8EA 2UZJA 3I06A 3H8BA 1U9VA 3P5UA 2FRQA 2FE8A 4OW0A 4I05A 3RVWA 2OULA 2ATOA 2HHNA 2NQGA 3W30A 3IEJA 4D8IA 3PHWA 1PPNA 2DJGB 4CDCB 2FQ9A 2PBHA 3KSEA 2AIMA 1HUCB 3N3KA 2PREA 3B21A 1CTEA 2AGAA 2GFOA 2R9MA 3KWBX 2VHSA 2DC6A 3QSDA 1AECA 4ZTBA 4BPVA 1AU2A 3E1ZB 3O1GA 3IHPA 4PT5A 5JH3A 9PAPA 1PPOA 3KKUA 1POPA 3TNXA 8PCHA 2R9CA 2B1MA 2HXZA 5K16A 1NPZA 2YJBA 2NQIA 4PADA 1F2BA 2FT2A 2R6NA 1TLOA 1SP4B 1ME3A 4MM3B 4W4UA 4G54A 1MEMA 1TL9A 2DOSA 1EWMA 5E6JA 4KLBA 2JRIA 1U5IA 3H7DA 4HWYA 2AU1A 1PBHA 3CH2X 2VHFA 2J7QA 4QH6A 1F29A 1YALA 1PADA 4MSXA 4P6EA 2AVWA 2AYNA 2P86A 3PDFA 3D6SA 1PPDA 3C0RA 4FIPA 1PVJA 5CHTA 3HD3A 1S4VA 4XUIA 4YV8A 3QT4A 5FPWA 2DCCA 3PHXA 1KHQA 1U9QX 4CDFB 3IFUA 5CVOB 1AYVA 4BS5A 3IV2A 1U9XA 3NHEA 5F02A 3O0UA 4WURA 4X6JA 4XR7A 2DCDA 4OELA 5A24A 4OVZB 3P5WA 2E01A 1NQCA 2E03A 4BOQA 1KFXL 1YT7A 2Y5BA 4CDDB 2DZZA 1PE6A 1FH0A 2ACTA 3LXSA 2JQGR 3IUTA 2DZYA 3BBAA 4Q8GA 3MJ5A 2R9FA 1BP4A 1GECE 1TU6A 1KHPA 2F7DA 4Q8HA 1AU4A 2NQDB 3USVA 1MDWA 3PT2A 3ZUAA 1QMYA 3PRMA 1ITOA 3BB7A 4MI7A 5PADA 3S3RA 3QJ3A 2E00A 5JZEA 2DC8A 2YJCA 3HWNA 5JA7A 3B79A 3O65A 1MHWA 2G8EA 3H6SA 4W5CA 3BCNA 1AIMA 4R3DA 1NLJA 4DMYA 3C9EA 3RVVA 4I04A 1NB3A 2PADA 2HD5A 3KW9A 1PXVA 3K24A 1EWPA 1CQDA 4WA6A 2AUXA 4QRXA 4MZSA 4YYVA 6PADA 2FO5A 1AU0A 5CVNB 4K7CA 3BOWA 3K8UA 3P5XA 2XU3A 3KWZA 5EZSA 4YYUA 4BOZA 3BPMA 2Z84A 2G7YA 4RY2A 1YVBA 2R9NA 4XZXA 3WXEA 1PPPA 2P7UA 4OVZA 4A5UA 3IOQA 2H7JA 5J94A 5EGWA 1ATKA 1GMYA 4D8BA 2E02A 2C0YA 3PW3A 2AS8A 1BY8A 1EWLA 2FUDA 4ZUXU 1BGOA 3AI8A 4N4ZA 4MZOA 4BOPA 1GCBA 3PBHA 2CIOA 4BSQA 1QXPA 4DMXA 1DEUA 2DCAA 2ARYA 3OF8A 2DC9A 2XU4A 4AXLA 1NL6A 3BY4A 4N79A 4P6GA 1DF0A 4OEMA 1F2AA 1EF7A 1PIPA 2PNSA 1KXRA 7PCKA 4FJCA 3MHSA 1O0EA 5CVMA 4QBBA 1CVZA 3MORA 4CDEB 4QRVA 3PHUA 2DCBA 2R9OA 4CZWA 1CB5A 3KX1A
chains in the Genus database with same CATH topology
2JRIA 2BTWB 3PRPA 2J7QA 4REZA 4M0WA 2JTCA 3E9SA 3OQCA 4RKXA 5EZSA 1DKIA 4BOZA 3C0RA 1PVJA 4RF1A 3PHXA 2Z84A 4RF0A 3IFUA 5EZQA 3TRKA 2J7QC 2HWKA 4XZXA 4WURA 4IP3A 4OVZA 4A5UA 4D8EA 2UZJA 3PSEA 4D8BA 3W31A 4OVZB 4BOUA 2FE8A 5E6JA 4BOQA 4OW0A 3MTVA 1UKFA 3W30A 4RNAA 4D8IA 3PHWA 4GUAA 3BBAA 4BOPA 4HXDB 3MJ5A 3MP2A 4P16A 3B21A 2AGAA 4BOSA 3TMPA 4IUMA 4ZTBA 4PT5A 3BY4A 3PT2A 5KO3A 3PRMA 3BB7A 4MI7A 5JZEA 3O65A 3PHUA 4MM3B 3RNVA 2BTWA 4R3DA 1YZBA 2BU3A 2DOSA 3ZNHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J7Q C;  2J7Q A; 
#chains in the Genus database with same CATH topology
 3F5V A;  1M6D A;  3CH3 X;  2BTW B;  4YYS A;  1JQP A;  1U9W A;  4X6I A;  3OVX A;  1MEG A;  2F1G A;  2P0R A;  2G8J A;  1CV8 A;  3WXG A;  1Y08 A;  4M0W A;  3E9S A;  3OQC A;  1Q6K A;  3OF9 A;  1F2C A;  4PP2 E;  1DKI A;  3HHI A;  1VSN A;  4PI3 A;  1X9Y A;  3V6E A;  1ZCM A;  1AU3 A;  4RF1 A;  1CPJ A;  3MHH A;  4YYW A;  2HH5 A;  2DC7 A;  5EF4 A;  3TRK A;  3HHA A;  2J7Q C;  1STF E;  5CHV A;  3I3T A;  1KFU L;  3PSE A;  2BDL A;  3W31 A;  3MTN A;  3V6C A;  1THE A;  4BOU A;  3S3Q A;  1A6R A;  2B1N A;  2IPP B;  1QOL A;  3F75 A;  3OVZ A;  3MTV A;  1UKF A;  1EWO A;  2XU5 A;  4RNA A;  1MS6 A;  4AXM A;  3WXF A;  1ZIV A;  2OP3 A;  4X6H A;  1NB5 A;  3ERV A;  3IMA A;  3OIS A;  4GUA A;  2FTD A;  3BC3 A;  3BPF A;  3M99 A;  3H89 A;  4HXD B;  3MP2 A;  2YJ8 A;  2CB5 A;  4P16 A;  1SNK A;  3U8E A;  2G6D A;  2DJF B;  1ME4 A;  2AUZ A;  2FYE A;  3TMP A;  4BOS A;  4W5B A;  4IUM A;  2Y6E A;  4BS6 A;  5KO3 A;  1Y4H A;  2XU1 A;  4YVA A;  1PCI A;  4FK5 A;  4QRG A;  1K3B B;  4I07 A;  3CBJ A;  1AYW A;  1VJV A;  1MIR A;  2YJ2 A;  2WBF X;  3N3G A;  2YJ9 A;  1QDQ A;  1BQI A;  3K9M A;  3RNV A;  2BTW A;  2O6X A;  1YZB A;  2BU3 A;  4YYR A;  1ICF A;  3ZNH A;  1GLO A;  3LFY A;  3KFQ A;  3PRP A;  4YYQ A;  4REZ A;  3RVX A;  3PNR A;  1CJL A;  2JQF R;  3CBK A;  2IBI A;  2BDZ A;  2JTC A;  1AYU A;  1YK8 A;  4RKX A;  4BQV A;  1IWD A;  3GCB A;  1CSB B;  3N4C A;  4N8W A;  1CS8 A;  2NQA A;  3BWK A;  2OZ2 A;  3P5V A;  2GHU A;  4RF0 A;  1YK7 A;  3DF0 A;  5EZQ A;  4PP1 A;  3H8C A;  1XKG A;  2HWK A;  2FRA A;  4IP3 A;  2AYO A;  4D8E A;  2UZJ A;  3I06 A;  3H8B A;  1U9V A;  3P5U A;  2FRQ A;  2FE8 A;  4OW0 A;  4I05 A;  3RVW A;  2OUL A;  2ATO A;  2HHN A;  2NQG A;  3W30 A;  3IEJ A;  4D8I A;  3PHW A;  1PPN A;  2DJG B;  4CDC B;  2FQ9 A;  2PBH A;  3KSE A;  2AIM A;  1HUC B;  3N3K A;  2PRE A;  3B21 A;  1CTE A;  2AGA A;  2GFO A;  2R9M A;  3KWB X;  2VHS A;  2DC6 A;  3QSD A;  1AEC A;  4ZTB A;  4BPV A;  1AU2 A;  3E1Z B;  3O1G A;  3IHP A;  4PT5 A;  5JH3 A;  9PAP A;  1PPO A;  3KKU A;  1POP A;  3TNX A;  8PCH A;  2R9C A;  2B1M A;  2HXZ A;  5K16 A;  1NPZ A;  2YJB A;  2NQI A;  4PAD A;  1F2B A;  2FT2 A;  2R6N A;  1TLO A;  1SP4 B;  1ME3 A;  4MM3 B;  4W4U A;  4G54 A;  1MEM A;  1TL9 A;  2DOS A;  1EWM A;  5E6J A;  4KLB A;  2JRI A;  1U5I A;  3H7D A;  4HWY A;  2AU1 A;  1PBH A;  3CH2 X;  2VHF A;  2J7Q A;  4QH6 A;  1F29 A;  1YAL A;  1PAD A;  4MSX A;  4P6E A;  2AVW A;  2AYN A;  2P86 A;  3PDF A;  3D6S A;  1PPD A;  3C0R A;  4FIP A;  1PVJ A;  5CHT A;  3HD3 A;  1S4V A;  4XUI A;  4YV8 A;  3QT4 A;  5FPW A;  2DCC A;  3PHX A;  1KHQ A;  1U9Q X;  4CDF B;  3IFU A;  5CVO B;  1AYV A;  4BS5 A;  3IV2 A;  1U9X A;  3NHE A;  5F02 A;  3O0U A;  4WUR A;  4X6J A;  4XR7 A;  2DCD A;  4OEL A;  5A24 A;  4OVZ B;  3P5W A;  2E01 A;  1NQC A;  2E03 A;  4BOQ A;  1KFX L;  1YT7 A;  2Y5B A;  4CDD B;  2DZZ A;  1PE6 A;  1FH0 A;  2ACT A;  3LXS A;  2JQG R;  3IUT A;  2DZY A;  3BBA A;  4Q8G A;  3MJ5 A;  2R9F A;  1BP4 A;  1GEC E;  1TU6 A;  1KHP A;  2F7D A;  4Q8H A;  1AU4 A;  2NQD B;  3USV A;  1MDW A;  3PT2 A;  3ZUA A;  1QMY A;  3PRM A;  1ITO A;  3BB7 A;  4MI7 A;  5PAD A;  3S3R A;  3QJ3 A;  2E00 A;  5JZE A;  2DC8 A;  2YJC A;  3HWN A;  5JA7 A;  3B79 A;  3O65 A;  1MHW A;  2G8E A;  3H6S A;  4W5C A;  3BCN A;  1AIM A;  4R3D A;  1NLJ A;  4DMY A;  3C9E A;  3RVV A;  4I04 A;  1NB3 A;  2PAD A;  2HD5 A;  3KW9 A;  1PXV A;  3K24 A;  1EWP A;  1CQD A;  4WA6 A;  2AUX A;  4QRX A;  4MZS A;  4YYV A;  6PAD A;  2FO5 A;  1AU0 A;  5CVN B;  4K7C A;  3BOW A;  3K8U A;  3P5X A;  2XU3 A;  3KWZ A;  5EZS A;  4YYU A;  4BOZ A;  3BPM A;  2Z84 A;  2G7Y A;  4RY2 A;  1YVB A;  2R9N A;  4XZX A;  3WXE A;  1PPP A;  2P7U A;  4OVZ A;  4A5U A;  3IOQ A;  2H7J A;  5J94 A;  5EGW A;  1ATK A;  1GMY A;  4D8B A;  2E02 A;  2C0Y A;  3PW3 A;  2AS8 A;  1BY8 A;  1EWL A;  2FUD A;  4ZUX U;  1BGO A;  3AI8 A;  4N4Z A;  4MZO A;  4BOP A;  1GCB A;  3PBH A;  2CIO A;  4BSQ A;  1QXP A;  4DMX A;  1DEU A;  2DCA A;  2ARY A;  3OF8 A;  2DC9 A;  2XU4 A;  4AXL A;  1NL6 A;  3BY4 A;  4N79 A;  4P6G A;  1DF0 A;  4OEM A;  1F2A A;  1EF7 A;  1PIP A;  2PNS A;  1KXR A;  7PCK A;  4FJC A;  3MHS A;  1O0E A;  5CVM A;  4QBB A;  1CVZ A;  3MOR A;  4CDE B;  4QRV A;  3PHU A;  2DCB A;  2R9O A;  4CZW A;  1CB5 A;  3KX1 A; 
#chains in the Genus database with same CATH homology
 2JRI A;  2BTW B;  3PRP A;  2J7Q A;  4REZ A;  4M0W A;  2JTC A;  3E9S A;  3OQC A;  4RKX A;  5EZS A;  1DKI A;  4BOZ A;  3C0R A;  1PVJ A;  4RF1 A;  3PHX A;  2Z84 A;  4RF0 A;  3IFU A;  5EZQ A;  3TRK A;  2J7Q C;  2HWK A;  4XZX A;  4WUR A;  4IP3 A;  4OVZ A;  4A5U A;  4D8E A;  2UZJ A;  3PSE A;  4D8B A;  3W31 A;  4OVZ B;  4BOU A;  2FE8 A;  5E6J A;  4BOQ A;  4OW0 A;  3MTV A;  1UKF A;  3W30 A;  4RNA A;  4D8I A;  3PHW A;  4GUA A;  3BBA A;  4BOP A;  4HXD B;  3MJ5 A;  3MP2 A;  4P16 A;  3B21 A;  2AGA A;  4BOS A;  3TMP A;  4IUM A;  4ZTB A;  4PT5 A;  3BY4 A;  3PT2 A;  5KO3 A;  3PRM A;  3BB7 A;  4MI7 A;  5JZE A;  3O65 A;  3PHU A;  4MM3 B;  3RNV A;  2BTW A;  4R3D A;  1YZB A;  2BU3 A;  2DOS A;  3ZNH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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