2J7QA

Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein m48 in complex with a ubquitin-based suicide substrate
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
232
structure length
232
Chain Sequence
b'MKIVRASRDQSAPVYGPRAGSQCMSNCFTFLHTCYLMGIDPVLDTTSLDAVLDSGARLDAIADEKVKRQALTDHPYRLGTEIPTVIETPAGITGHALSRPFNGTAETQDLGGYKCLGILDFLTYARGKPLPVYIIVTVGVHTRGVIVARGATYVFDPHTTDLSAEAAVYVCDDFTEAISALSFFTEMIGDFYYDAVLVYFTRCRTTLISPSELLVQIMDQYKDPDIDASVMS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes
pubmed doi rcsb
molecule keywords MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEA
source organism Murine cytomegalovirus
molecule tags Hydrolase
total genus 69
structure length 232
sequence length 232
ec nomenclature
pdb deposition date 2006-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.120 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 2j7qA00
2J7QC 2J7QA
chains in the Genus database with same CATH superfamily
1YZBA 5JA7A 1AYVA 3PRMA 4QRGA 1THEA 3F5VA 2G8EA 2HH5A 3CBKA 2AGAA 3BPMA 1NPZA 3OVXA 1PPDA 1BP4A 4MSXA 1TL9A 3OQCA 1ICFA 2Y6EA 3BY4A 3V6EA 1AU4A 1YT7A 1PCIA 2HD5A 5CVNB 1EWLA 2DC7A 3IOQA 1AIMA 3P5VA 5CVMA 1M6DA 3ZNHA 1PVJA 3M99A 3LFYA 4XZXA 5KO3A 2FRQA 3P5UA 3IV2A 1BY8A 4I07A 3OISA 3WXFA 2R6NA 2XU3A 1CVZA 3IEJA 4Q8GA 4BOQA 4YYRA 1F2AA 1UKFA 2HWKA 1VSNA 2Y5BA 2AUXA 1PE6A 2BU3A 3K24A 3QJ3A 2P0RA 3N3KA 2B1NA 4K7CA 2PNSA 5FPWA 3WXGA 1CPJA 4MZSA 1NQCA 1F29A 3E9SA 3BPFA 4YV8A 1ZCMA 1EWMA 1DKIA 2AVWA 4ZUXU 2J7QA 2NQIA 1NL6A 2DCAA 5JZEA 2IPPB 3I3TA 2AYNA 3D6SA 3PW3A 1MEMA 1MDWA 2GFOA 1MHWA 1CJLA 1ZIVA 1GECE 3PDFA 2DC6A 3H7DA 3HHAA 3HHIA 4M0WA 4W5CA 2IBIA 4N8WA 1GMYA 3MP2A 1Q6KA 3OF8A 4PP2E 1PBHA 4RNAA 1EWOA 1AYUA 1MEGA 4BOPA 4HXDB 1MIRA 3TRKA 1DF0A 1NLJA 1BGOA 4PI3A 3PBHA 2PREA 3PHXA 2UZJA 1GCBA 4X6HA 1KFXL 4ZTBA 1QXPA 4QRXA 5EF4A 2B1MA 1AU3A 4AXMA 4IUMA 1IWDA 4N4ZA 2E03A 3BCNA 3KWBX 3IMAA 1YK8A 2CB5A 1NB3A 4OEMA 2ATOA 2VHSA 5A24A 4G54A 2ARYA 1EWPA 1AYWA 2F7DA 3K9MA 5K16A 3PHUA 3TMPA 2P86A 2E01A 2NQDB 2FYEA 2JQGR 2FO5A 1YALA 4OVZA 2DJGB 3U8EA 1AU0A 4QH6A 4BOSA 3WXEA 3ERVA 3OF9A 4YYWA 4WURA 3BB7A 2AU1A 3B21A 3QSDA 8PCHA 3KWZA 4RF0A 4BS6A 5CHVA 3H6SA 2WBFX 3KSEA 2AIMA 2FT2A 4X6JA 2DCDA 3TNXA 1TLOA 2BTWA 4MI7A 4RY2A 7PCKA 1K3BB 3W31A 3H8BA 2GHUA 1S4VA 1VJVA 1U9XA 5J94A 4BOUA 4RF1A 3S3RA 1SNKA 2R9CA 2E02A 5EZQA 2E00A 4I05A 1MS6A 2C0YA 4YYSA 2YJ2A 3O0UA 4BPVA 1F2BA 1QOLA 3ZUAA 2JQFR 3V6CA 2DJFB 1POPA 4AXLA 2FQ9A 1F2CA 1CSBB 1PPNA 3BWKA 2YJCA 2G7YA 1KHPA 2F1GA 3QT4A 2H7JA 3LXSA 1NB5A 3B79A 3HD3A 4CZWA 4CDDB 4A5UA 3RVXA 1ITOA 4CDFB 2XU5A 2OULA 1X9YA 3HWNA 4REZA 3K8UA 3O1GA 3O65A 1CTEA 2P7UA 4RKXA 3C9EA 1XKGA 2OP3A 3MHSA 2PBHA 5F02A 2BTWB 1BQIA 4IP3A 3BBAA 4YYUA 3P5XA 4OELA 1ATKA 3I06A 6PADA 2AUZA 3PSEA 3OVZA 1U5IA 4GUAA 3MHHA 3MORA 4W4UA 1SP4B 5CVOB 3N3GA 3IUTA 1U9WA 3PRPA 2FTDA 4D8EA 2JRIA 2DC9A 2YJ9A 2BDZA 2FRAA 1YVBA 1PADA 1QMYA 3P5WA 3GCBA 4BOZA 3N4CA 1EF7A 2JTCA 4YVAA 1CB5A 3USVA 4N79A 1JQPA 1CS8A 3KW9A 2R9FA 4PP1A 4P6EA 1PXVA 3MJ5A 2HXZA 2AS8A 2G8JA 4FK5A 1AU2A 2CIOA 3PNRA 1TU6A 4D8IA 4DMXA 2R9OA 5CHTA 2DZYA 3RVWA 4R3DA 2DC8A 4BQVA 2FE8A 9PAPA 2VHFA 1STFE 4WA6A 2FUDA 3BOWA 2DCBA 2O6XA 4PT5A 1PPPA 1U9VA 4YYVA 4PADA 3H8CA 4MM3B 2YJ8A 3AI8A 1KXRA 3DF0A 5PADA 2XU4A 4D8BA 2ACTA 5E6JA 1O0EA 5EZSA 4KLBA 2YJBA 4FIPA 1FH0A 4P6GA 4BSQA 3S3QA 1CQDA 2AYOA 1KHQA 3PHWA 1PIPA 3IFUA 1U9QX 2G6DA 2OZ2A 4X6IA 2BDLA 3C0RA 1Y08A 3CH2X 3KFQA 1HUCB 5JH3A 1A6RA 4QRVA 4HWYA 2J7QC 1ME3A 4I04A 1PPOA 4CDCB 4OVZB 4Q8HA 1YK7A 4P16A 3RNVA 4FJCA 3RVVA 2HHNA 1ME4A 2NQAA 2NQGA 4XUIA 3MTVA 3F75A 1DEUA 2R9NA 5EGWA 3KX1A 4YYQA 4CDEB 3H89A 4XR7A 2DOSA 4MZOA 4QBBA 2XU1A 2R9MA 2PADA 1KFUL 2DZZA 4BS5A 1QDQA 3PT2A 3KKUA 4W5BA 3CBJA 2Z84A 1CV8A 3CH3X 3NHEA 3BC3A 1GLOA 3IHPA 3MTNA 4OW0A 1Y4HA 1AECA 3W30A 2DCCA 4DMYA 3E1ZB
chains in the Genus database with same CATH topology
1YZBA 3PRMA 3MP2A 4PT5A 4RNAA 2AGAA 4BOPA 4MM3B 4HXDB 3TRKA 3OQCA 4D8BA 5E6JA 3BY4A 3PHXA 5EZSA 2UZJA 4ZTBA 3PHWA 3IFUA 4A5UA 4REZA 3C0RA 4IUMA 3ZNHA 3O65A 1PVJA 4RKXA 4XZXA 5KO3A 4BOQA 2BTWB 2J7QC 4IP3A 1UKFA 3BBAA 2HWKA 4OVZB 3TMPA 3PHUA 4P16A 3RNVA 2BU3A 3PSEA 4GUAA 3MTVA 4OVZA 3PRPA 4BOSA 4D8EA 2JRIA 4WURA 2DOSA 3BB7A 3E9SA 3B21A 4RF0A 1DKIA 4BOZA 2JTCA 2J7QA 3PT2A 2BTWA 4MI7A 5JZEA 2Z84A 3W31A 3MJ5A 4D8IA 4BOUA 4RF1A 4M0WA 4OW0A 4R3DA 2FE8A 5EZQA 3W30A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J7Q C;  2J7Q A; 
#chains in the Genus database with same CATH topology
 1YZB A;  5JA7 A;  1AYV A;  3PRM A;  4QRG A;  1THE A;  3F5V A;  2G8E A;  2HH5 A;  3CBK A;  2AGA A;  3BPM A;  1NPZ A;  3OVX A;  1PPD A;  1BP4 A;  4MSX A;  1TL9 A;  3OQC A;  1ICF A;  2Y6E A;  3BY4 A;  3V6E A;  1AU4 A;  1YT7 A;  1PCI A;  2HD5 A;  5CVN B;  1EWL A;  2DC7 A;  3IOQ A;  1AIM A;  3P5V A;  5CVM A;  1M6D A;  3ZNH A;  1PVJ A;  3M99 A;  3LFY A;  4XZX A;  5KO3 A;  2FRQ A;  3P5U A;  3IV2 A;  1BY8 A;  4I07 A;  3OIS A;  3WXF A;  2R6N A;  2XU3 A;  1CVZ A;  3IEJ A;  4Q8G A;  4BOQ A;  4YYR A;  1F2A A;  1UKF A;  2HWK A;  1VSN A;  2Y5B A;  2AUX A;  1PE6 A;  2BU3 A;  3K24 A;  3QJ3 A;  2P0R A;  3N3K A;  2B1N A;  4K7C A;  2PNS A;  5FPW A;  3WXG A;  1CPJ A;  4MZS A;  1NQC A;  1F29 A;  3E9S A;  3BPF A;  4YV8 A;  1ZCM A;  1EWM A;  1DKI A;  2AVW A;  4ZUX U;  2J7Q A;  2NQI A;  1NL6 A;  2DCA A;  5JZE A;  2IPP B;  3I3T A;  2AYN A;  3D6S A;  3PW3 A;  1MEM A;  1MDW A;  2GFO A;  1MHW A;  1CJL A;  1ZIV A;  1GEC E;  3PDF A;  2DC6 A;  3H7D A;  3HHA A;  3HHI A;  4M0W A;  4W5C A;  2IBI A;  4N8W A;  1GMY A;  3MP2 A;  1Q6K A;  3OF8 A;  4PP2 E;  1PBH A;  4RNA A;  1EWO A;  1AYU A;  1MEG A;  4BOP A;  4HXD B;  1MIR A;  3TRK A;  1DF0 A;  1NLJ A;  1BGO A;  4PI3 A;  3PBH A;  2PRE A;  3PHX A;  2UZJ A;  1GCB A;  4X6H A;  1KFX L;  4ZTB A;  1QXP A;  4QRX A;  5EF4 A;  2B1M A;  1AU3 A;  4AXM A;  4IUM A;  1IWD A;  4N4Z A;  2E03 A;  3BCN A;  3KWB X;  3IMA A;  1YK8 A;  2CB5 A;  1NB3 A;  4OEM A;  2ATO A;  2VHS A;  5A24 A;  4G54 A;  2ARY A;  1EWP A;  1AYW A;  2F7D A;  3K9M A;  5K16 A;  3PHU A;  3TMP A;  2P86 A;  2E01 A;  2NQD B;  2FYE A;  2JQG R;  2FO5 A;  1YAL A;  4OVZ A;  2DJG B;  3U8E A;  1AU0 A;  4QH6 A;  4BOS A;  3WXE A;  3ERV A;  3OF9 A;  4YYW A;  4WUR A;  3BB7 A;  2AU1 A;  3B21 A;  3QSD A;  8PCH A;  3KWZ A;  4RF0 A;  4BS6 A;  5CHV A;  3H6S A;  2WBF X;  3KSE A;  2AIM A;  2FT2 A;  4X6J A;  2DCD A;  3TNX A;  1TLO A;  2BTW A;  4MI7 A;  4RY2 A;  7PCK A;  1K3B B;  3W31 A;  3H8B A;  2GHU A;  1S4V A;  1VJV A;  1U9X A;  5J94 A;  4BOU A;  4RF1 A;  3S3R A;  1SNK A;  2R9C A;  2E02 A;  5EZQ A;  2E00 A;  4I05 A;  1MS6 A;  2C0Y A;  4YYS A;  2YJ2 A;  3O0U A;  4BPV A;  1F2B A;  1QOL A;  3ZUA A;  2JQF R;  3V6C A;  2DJF B;  1POP A;  4AXL A;  2FQ9 A;  1F2C A;  1CSB B;  1PPN A;  3BWK A;  2YJC A;  2G7Y A;  1KHP A;  2F1G A;  3QT4 A;  2H7J A;  3LXS A;  1NB5 A;  3B79 A;  3HD3 A;  4CZW A;  4CDD B;  4A5U A;  3RVX A;  1ITO A;  4CDF B;  2XU5 A;  2OUL A;  1X9Y A;  3HWN A;  4REZ A;  3K8U A;  3O1G A;  3O65 A;  1CTE A;  2P7U A;  4RKX A;  3C9E A;  1XKG A;  2OP3 A;  3MHS A;  2PBH A;  5F02 A;  2BTW B;  1BQI A;  4IP3 A;  3BBA A;  4YYU A;  3P5X A;  4OEL A;  1ATK A;  3I06 A;  6PAD A;  2AUZ A;  3PSE A;  3OVZ A;  1U5I A;  4GUA A;  3MHH A;  3MOR A;  4W4U A;  1SP4 B;  5CVO B;  3N3G A;  3IUT A;  1U9W A;  3PRP A;  2FTD A;  4D8E A;  2JRI A;  2DC9 A;  2YJ9 A;  2BDZ A;  2FRA A;  1YVB A;  1PAD A;  1QMY A;  3P5W A;  3GCB A;  4BOZ A;  3N4C A;  1EF7 A;  2JTC A;  4YVA A;  1CB5 A;  3USV A;  4N79 A;  1JQP A;  1CS8 A;  3KW9 A;  2R9F A;  4PP1 A;  4P6E A;  1PXV A;  3MJ5 A;  2HXZ A;  2AS8 A;  2G8J A;  4FK5 A;  1AU2 A;  2CIO A;  3PNR A;  1TU6 A;  4D8I A;  4DMX A;  2R9O A;  5CHT A;  2DZY A;  3RVW A;  4R3D A;  2DC8 A;  4BQV A;  2FE8 A;  9PAP A;  2VHF A;  1STF E;  4WA6 A;  2FUD A;  3BOW A;  2DCB A;  2O6X A;  4PT5 A;  1PPP A;  1U9V A;  4YYV A;  4PAD A;  3H8C A;  4MM3 B;  2YJ8 A;  3AI8 A;  1KXR A;  3DF0 A;  5PAD A;  2XU4 A;  4D8B A;  2ACT A;  5E6J A;  1O0E A;  5EZS A;  4KLB A;  2YJB A;  4FIP A;  1FH0 A;  4P6G A;  4BSQ A;  3S3Q A;  1CQD A;  2AYO A;  1KHQ A;  3PHW A;  1PIP A;  3IFU A;  1U9Q X;  2G6D A;  2OZ2 A;  4X6I A;  2BDL A;  3C0R A;  1Y08 A;  3CH2 X;  3KFQ A;  1HUC B;  5JH3 A;  1A6R A;  4QRV A;  4HWY A;  2J7Q C;  1ME3 A;  4I04 A;  1PPO A;  4CDC B;  4OVZ B;  4Q8H A;  1YK7 A;  4P16 A;  3RNV A;  4FJC A;  3RVV A;  2HHN A;  1ME4 A;  2NQA A;  2NQG A;  4XUI A;  3MTV A;  3F75 A;  1DEU A;  2R9N A;  5EGW A;  3KX1 A;  4YYQ A;  4CDE B;  3H89 A;  4XR7 A;  2DOS A;  4MZO A;  4QBB A;  2XU1 A;  2R9M A;  2PAD A;  1KFU L;  2DZZ A;  4BS5 A;  1QDQ A;  3PT2 A;  3KKU A;  4W5B A;  3CBJ A;  2Z84 A;  1CV8 A;  3CH3 X;  3NHE A;  3BC3 A;  1GLO A;  3IHP A;  3MTN A;  4OW0 A;  1Y4H A;  1AEC A;  3W30 A;  2DCC A;  4DMY A;  3E1Z B; 
#chains in the Genus database with same CATH homology
 1YZB A;  3PRM A;  3MP2 A;  4PT5 A;  4RNA A;  2AGA A;  4BOP A;  4MM3 B;  4HXD B;  3TRK A;  3OQC A;  4D8B A;  5E6J A;  3BY4 A;  3PHX A;  5EZS A;  2UZJ A;  4ZTB A;  3PHW A;  3IFU A;  4A5U A;  4REZ A;  3C0R A;  4IUM A;  3ZNH A;  3O65 A;  1PVJ A;  4RKX A;  4XZX A;  5KO3 A;  4BOQ A;  2BTW B;  2J7Q C;  4IP3 A;  1UKF A;  3BBA A;  2HWK A;  4OVZ B;  3TMP A;  3PHU A;  4P16 A;  3RNV A;  2BU3 A;  3PSE A;  4GUA A;  3MTV A;  4OVZ A;  3PRP A;  4BOS A;  4D8E A;  2JRI A;  4WUR A;  2DOS A;  3BB7 A;  3E9S A;  3B21 A;  4RF0 A;  1DKI A;  4BOZ A;  2JTC A;  2J7Q A;  3PT2 A;  2BTW A;  4MI7 A;  5JZE A;  2Z84 A;  3W31 A;  3MJ5 A;  4D8I A;  4BOU A;  4RF1 A;  4M0W A;  4OW0 A;  4R3D A;  2FE8 A;  5EZQ A;  3W30 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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