3OQCA

Ubiquitin-fold modifier 1 specific protease, ufsp2
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
461
structure length
416
Chain Sequence
MDILFRIRGGFDLAFQLAPPKEMFIKNALRQVLSDLTTKLSSDALVLRVCNSLWPNSDGELTDSSACKNVVRFITQQIVNIDLMLEISHYINMSLPIDAVVSVAPEESWGKVRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSPDFWNKDAYYNLCLPQRPNAL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Mus musculus
publication title Structure of ubiquitin-fold modifier 1-specific protease UfSP2
pubmed doi rcsb
molecule keywords Ufm1-specific protease 2
total genus 104
structure length 416
sequence length 461
chains with identical sequence B
ec nomenclature ec 3.4.22.-:
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07910 Peptidase_C78 Peptidase family C78
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.130 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3oqcA02
2Z84A 3OQCA
chains in the Genus database with same CATH superfamily
2Y5BA 2DZYA 4YYSA 5A24A 1CTEA 4N4ZA 4BPVA 2NQGA 1PCIA 1K3BB 2DCDA 3RNVA 2P0RA 4MZOA 4XZXA 1XKGA 4X6IA 4YYRA 1CSBB 4QBBA 1EF7A 1CQDA 3O65A 1HUCB 5EZQA 3MORA 4D8IA 2AUZA 4BQVA 4RF0A 4QRVA 5JA7A 3H8CA 1BQIA 2UZJA 4XUIA 4HXDB 1CS8A 1AU2A 1KHQA 2DJGB 3V6EA 3ERVA 3WXGA 1GCBA 3ZUAA 3MP2A 4BSQA 4Q8GA 1FH0A 1PXVA 3KWZA 3PHWA 3H7DA 3OQCA 2Y6EA 1PPOA 2ACTA 3WXFA 4PP1A 3IFUA 4YYQA 2B1NA 4YYUA 4BOPA 2G8JA 3KWBX 4MZSA 4P6GA 3V6CA 2FT2A 1QXPA 2BTWB 2CIOA 3BPFA 2R9CA 1ATKA 4KLBA 3E1ZB 4IUMA 1STFE 3MTNA 1ME3A 3MHHA 4A5UA 1MIRA 3H89A 4P6EA 4YVAA 2NQAA 4DMYA 2ARYA 3S3QA 1BP4A 1CJLA 2HD5A 2XU3A 5EZSA 3RVXA 4M0WA 4IP3A 1MS6A 2Z84A 3LXSA 3KX1A 2FQ9A 2J7QC 4PI3A 2DC8A 5E6JA 2BTWA 1MDWA 1YZBA 1THEA 3KSEA 1PBHA 2E00A 4I04A 4W4UA 2NQDB 4N8WA 4HWYA 3H6SA 1TU6A 2OP3A 5EGWA 4QRGA 1BY8A 1EWMA 2DC6A 3P5UA 3OF9A 1SNKA 2BDLA 3O0UA 1UKFA 4G54A 1NQCA 4CZWA 2E01A 2DZZA 3BB7A 4CDEB 2O6XA 3C0RA 2DC9A 5K16A 3I3TA 2R9NA 2FTDA 3ZNHA 1YVBA 1F29A 1KHPA 2R9OA 4FIPA 1PPNA 1SP4B 4BOZA 1QDQA 5FPWA 1KFUL 1NLJA 3BC3A 3CH2X 2YJBA 2G7YA 3QSDA 2VHSA 2JRIA 1KFXL 2JQFR 3HD3A 1MEGA 3D6SA 4FJCA 4K7CA 1CB5A 2AVWA 1F2BA 2E02A 1MEMA 2BDZA 3RVVA 2GHUA 9PAPA 4CDFB 2DCCA 2XU1A 1EWPA 1TLOA 2XU4A 3CBKA 2R9MA 1PVJA 1A6RA 4BS5A 4RY2A 4D8BA 1EWOA 3OF8A 4ZUXU 4MI7A 4W5BA 4D8EA 1AECA 2C0YA 2FO5A 2YJ9A 5CVOB 1ZCMA 1PIPA 1NB5A 4WA6A 7PCKA 1YT7A 5CHVA 2NQIA 3PHXA 2P86A 1YALA 4OVZB 1POPA 1U5IA 1AYWA 4MM3B 2AIMA 3PDFA 2IPPB 2YJCA 3O1GA 2FRAA 3NHEA 1DEUA 1Y4HA 2HH5A 1F2CA 2FRQA 1DF0A 1PPDA 1ITOA 4R3DA 2HHNA 4OVZA 3I06A 2P7UA 2DJFB 5PADA 6PADA 1QOLA 4XR7A 1NL6A 4ZTBA 5KO3A 1AIMA 3PHUA 4OELA 3BCNA 2PADA 4W5CA 2J7QA 4FK5A 2AYNA 2YJ2A 1CVZA 4CDDB 4I07A 2F7DA 3IOQA 3MJ5A 3BPMA 2HWKA 3HWNA 2JTCA 3PSEA 1S4VA 3P5WA 2DC7A 4QH6A 4CDCB 2DCBA 3QJ3A 4BOSA 2AGAA 1X9YA 3KFQA 2R9FA 1U9VA 3IHPA 3RVWA 2AUXA 4X6JA 4BOQA 1AU0A 1VSNA 4I05A 1ICFA 3P5XA 4OW0A 1IWDA 2OZ2A 1MHWA 1GLOA 2F1GA 3USVA 1Y08A 3PRMA 4RNAA 1U9XA 2GFOA 2YJ8A 2H7JA 3KKUA 4QRXA 2CB5A 1O0EA 2AYOA 1NPZA 3PNRA 1AU3A 4YYWA 4WURA 1JQPA 2XU5A 3N4CA 3CBJA 3PW3A 4YYVA 4MSXA 2JQGR 4P16A 1GMYA 5CVMA 1F2AA 2DOSA 2VHFA 3TRKA 2WBFX 2PNSA 4DMXA 1ME4A 3PBHA 2BU3A 3IV2A 3BY4A 3IUTA 3C9EA 3BBAA 4PP2E 2PREA 3W31A 3N3GA 3DF0A 3M99A 2OULA 1U9WA 1YK8A 3IEJA 1EWLA 1M6DA 3F75A 3OVXA 1AYVA 3HHIA 4PT5A 4BS6A 1VJVA 4RF1A 3K24A 3OVZA 1NB3A 3P5VA 5CHTA 2E03A 4YV8A 1PADA 5J94A 3CH3X 5JZEA 3IMAA 1CPJA 3W30A 3GCBA 3KW9A 3QT4A 4N79A 3E9SA 2AU1A 2ATOA 4X6HA 5F02A 3LFYA 2DCAA 1PPPA 1Q6KA 1GECE 2FE8A 3TNXA 1PE6A 3N3KA 1YK7A 3U8EA 3PT2A 2B1MA 3F5VA 1TL9A 1KXRA 3B21A 3HHAA 3WXEA 3MTVA 1U9QX 4Q8HA 3S3RA 3B79A 3AI8A 5EF4A 3BWKA 2G8EA 2R6NA 3MHSA 5CVNB 3K8UA 4REZA 3TMPA 4AXMA 4RKXA 1CV8A 3PRPA 2PBHA 3OISA 1QMYA 4OEMA 3H8BA 4AXLA 2HXZA 4BOUA 4PADA 1DKIA 2IBIA 2FUDA 4GUAA 2FYEA 3K9MA 1AYUA 1BGOA 3BOWA 2AS8A 1ZIVA 1AU4A 2G6DA 8PCHA 5JH3A
chains in the Genus database with same CATH topology
2BU3A 4R3DA 3BY4A 3BBAA 1UKFA 4OVZA 3RNVA 3W31A 3BB7A 4XZXA 3C0RA 4ZTBA 3ZNHA 3O65A 5KO3A 5EZQA 3PHUA 4D8IA 4RF0A 2UZJA 4HXDB 2J7QA 4PT5A 4RF1A 4BOZA 3MJ5A 3MP2A 5JZEA 2HWKA 2JTCA 3PSEA 3W30A 3PHWA 3E9SA 2JRIA 3OQCA 4BOSA 2AGAA 3IFUA 2FE8A 4BOPA 4BOQA 3PT2A 1PVJA 3B21A 4OW0A 2BTWB 4D8BA 3MTVA 3PRMA 4MI7A 4IUMA 4RNAA 4D8EA 4A5UA 4REZA 3TMPA 4RKXA 3PRPA 3PHXA 4OVZB 5EZSA 4M0WA 4WURA 4IP3A 2Z84A 4MM3B 2J7QC 4BOUA 5E6JA 2BTWA 1YZBA 1DKIA 4GUAA 4P16A 2DOSA 3TRKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z84 A;  3OQC A; 
#chains in the Genus database with same CATH topology
 2Y5B A;  2DZY A;  4YYS A;  5A24 A;  1CTE A;  4N4Z A;  4BPV A;  2NQG A;  1PCI A;  1K3B B;  2DCD A;  3RNV A;  2P0R A;  4MZO A;  4XZX A;  1XKG A;  4X6I A;  4YYR A;  1CSB B;  4QBB A;  1EF7 A;  1CQD A;  3O65 A;  1HUC B;  5EZQ A;  3MOR A;  4D8I A;  2AUZ A;  4BQV A;  4RF0 A;  4QRV A;  5JA7 A;  3H8C A;  1BQI A;  2UZJ A;  4XUI A;  4HXD B;  1CS8 A;  1AU2 A;  1KHQ A;  2DJG B;  3V6E A;  3ERV A;  3WXG A;  1GCB A;  3ZUA A;  3MP2 A;  4BSQ A;  4Q8G A;  1FH0 A;  1PXV A;  3KWZ A;  3PHW A;  3H7D A;  3OQC A;  2Y6E A;  1PPO A;  2ACT A;  3WXF A;  4PP1 A;  3IFU A;  4YYQ A;  2B1N A;  4YYU A;  4BOP A;  2G8J A;  3KWB X;  4MZS A;  4P6G A;  3V6C A;  2FT2 A;  1QXP A;  2BTW B;  2CIO A;  3BPF A;  2R9C A;  1ATK A;  4KLB A;  3E1Z B;  4IUM A;  1STF E;  3MTN A;  1ME3 A;  3MHH A;  4A5U A;  1MIR A;  3H89 A;  4P6E A;  4YVA A;  2NQA A;  4DMY A;  2ARY A;  3S3Q A;  1BP4 A;  1CJL A;  2HD5 A;  2XU3 A;  5EZS A;  3RVX A;  4M0W A;  4IP3 A;  1MS6 A;  2Z84 A;  3LXS A;  3KX1 A;  2FQ9 A;  2J7Q C;  4PI3 A;  2DC8 A;  5E6J A;  2BTW A;  1MDW A;  1YZB A;  1THE A;  3KSE A;  1PBH A;  2E00 A;  4I04 A;  4W4U A;  2NQD B;  4N8W A;  4HWY A;  3H6S A;  1TU6 A;  2OP3 A;  5EGW A;  4QRG A;  1BY8 A;  1EWM A;  2DC6 A;  3P5U A;  3OF9 A;  1SNK A;  2BDL A;  3O0U A;  1UKF A;  4G54 A;  1NQC A;  4CZW A;  2E01 A;  2DZZ A;  3BB7 A;  4CDE B;  2O6X A;  3C0R A;  2DC9 A;  5K16 A;  3I3T A;  2R9N A;  2FTD A;  3ZNH A;  1YVB A;  1F29 A;  1KHP A;  2R9O A;  4FIP A;  1PPN A;  1SP4 B;  4BOZ A;  1QDQ A;  5FPW A;  1KFU L;  1NLJ A;  3BC3 A;  3CH2 X;  2YJB A;  2G7Y A;  3QSD A;  2VHS A;  2JRI A;  1KFX L;  2JQF R;  3HD3 A;  1MEG A;  3D6S A;  4FJC A;  4K7C A;  1CB5 A;  2AVW A;  1F2B A;  2E02 A;  1MEM A;  2BDZ A;  3RVV A;  2GHU A;  9PAP A;  4CDF B;  2DCC A;  2XU1 A;  1EWP A;  1TLO A;  2XU4 A;  3CBK A;  2R9M A;  1PVJ A;  1A6R A;  4BS5 A;  4RY2 A;  4D8B A;  1EWO A;  3OF8 A;  4ZUX U;  4MI7 A;  4W5B A;  4D8E A;  1AEC A;  2C0Y A;  2FO5 A;  2YJ9 A;  5CVO B;  1ZCM A;  1PIP A;  1NB5 A;  4WA6 A;  7PCK A;  1YT7 A;  5CHV A;  2NQI A;  3PHX A;  2P86 A;  1YAL A;  4OVZ B;  1POP A;  1U5I A;  1AYW A;  4MM3 B;  2AIM A;  3PDF A;  2IPP B;  2YJC A;  3O1G A;  2FRA A;  3NHE A;  1DEU A;  1Y4H A;  2HH5 A;  1F2C A;  2FRQ A;  1DF0 A;  1PPD A;  1ITO A;  4R3D A;  2HHN A;  4OVZ A;  3I06 A;  2P7U A;  2DJF B;  5PAD A;  6PAD A;  1QOL A;  4XR7 A;  1NL6 A;  4ZTB A;  5KO3 A;  1AIM A;  3PHU A;  4OEL A;  3BCN A;  2PAD A;  4W5C A;  2J7Q A;  4FK5 A;  2AYN A;  2YJ2 A;  1CVZ A;  4CDD B;  4I07 A;  2F7D A;  3IOQ A;  3MJ5 A;  3BPM A;  2HWK A;  3HWN A;  2JTC A;  3PSE A;  1S4V A;  3P5W A;  2DC7 A;  4QH6 A;  4CDC B;  2DCB A;  3QJ3 A;  4BOS A;  2AGA A;  1X9Y A;  3KFQ A;  2R9F A;  1U9V A;  3IHP A;  3RVW A;  2AUX A;  4X6J A;  4BOQ A;  1AU0 A;  1VSN A;  4I05 A;  1ICF A;  3P5X A;  4OW0 A;  1IWD A;  2OZ2 A;  1MHW A;  1GLO A;  2F1G A;  3USV A;  1Y08 A;  3PRM A;  4RNA A;  1U9X A;  2GFO A;  2YJ8 A;  2H7J A;  3KKU A;  4QRX A;  2CB5 A;  1O0E A;  2AYO A;  1NPZ A;  3PNR A;  1AU3 A;  4YYW A;  4WUR A;  1JQP A;  2XU5 A;  3N4C A;  3CBJ A;  3PW3 A;  4YYV A;  4MSX A;  2JQG R;  4P16 A;  1GMY A;  5CVM A;  1F2A A;  2DOS A;  2VHF A;  3TRK A;  2WBF X;  2PNS A;  4DMX A;  1ME4 A;  3PBH A;  2BU3 A;  3IV2 A;  3BY4 A;  3IUT A;  3C9E A;  3BBA A;  4PP2 E;  2PRE A;  3W31 A;  3N3G A;  3DF0 A;  3M99 A;  2OUL A;  1U9W A;  1YK8 A;  3IEJ A;  1EWL A;  1M6D A;  3F75 A;  3OVX A;  1AYV A;  3HHI A;  4PT5 A;  4BS6 A;  1VJV A;  4RF1 A;  3K24 A;  3OVZ A;  1NB3 A;  3P5V A;  5CHT A;  2E03 A;  4YV8 A;  1PAD A;  5J94 A;  3CH3 X;  5JZE A;  3IMA A;  1CPJ A;  3W30 A;  3GCB A;  3KW9 A;  3QT4 A;  4N79 A;  3E9S A;  2AU1 A;  2ATO A;  4X6H A;  5F02 A;  3LFY A;  2DCA A;  1PPP A;  1Q6K A;  1GEC E;  2FE8 A;  3TNX A;  1PE6 A;  3N3K A;  1YK7 A;  3U8E A;  3PT2 A;  2B1M A;  3F5V A;  1TL9 A;  1KXR A;  3B21 A;  3HHA A;  3WXE A;  3MTV A;  1U9Q X;  4Q8H A;  3S3R A;  3B79 A;  3AI8 A;  5EF4 A;  3BWK A;  2G8E A;  2R6N A;  3MHS A;  5CVN B;  3K8U A;  4REZ A;  3TMP A;  4AXM A;  4RKX A;  1CV8 A;  3PRP A;  2PBH A;  3OIS A;  1QMY A;  4OEM A;  3H8B A;  4AXL A;  2HXZ A;  4BOU A;  4PAD A;  1DKI A;  2IBI A;  2FUD A;  4GUA A;  2FYE A;  3K9M A;  1AYU A;  1BGO A;  3BOW A;  2AS8 A;  1ZIV A;  1AU4 A;  2G6D A;  8PCH A;  5JH3 A; 
#chains in the Genus database with same CATH homology
 2BU3 A;  4R3D A;  3BY4 A;  3BBA A;  1UKF A;  4OVZ A;  3RNV A;  3W31 A;  3BB7 A;  4XZX A;  3C0R A;  4ZTB A;  3ZNH A;  3O65 A;  5KO3 A;  5EZQ A;  3PHU A;  4D8I A;  4RF0 A;  2UZJ A;  4HXD B;  2J7Q A;  4PT5 A;  4RF1 A;  4BOZ A;  3MJ5 A;  3MP2 A;  5JZE A;  2HWK A;  2JTC A;  3PSE A;  3W30 A;  3PHW A;  3E9S A;  2JRI A;  3OQC A;  4BOS A;  2AGA A;  3IFU A;  2FE8 A;  4BOP A;  4BOQ A;  3PT2 A;  1PVJ A;  3B21 A;  4OW0 A;  2BTW B;  4D8B A;  3MTV A;  3PRM A;  4MI7 A;  4IUM A;  4RNA A;  4D8E A;  4A5U A;  4REZ A;  3TMP A;  4RKX A;  3PRP A;  3PHX A;  4OVZ B;  5EZS A;  4M0W A;  4WUR A;  4IP3 A;  2Z84 A;  4MM3 B;  2J7Q C;  4BOU A;  5E6J A;  2BTW A;  1YZB A;  1DKI A;  4GUA A;  4P16 A;  2DOS A;  3TRK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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