3OQCA

Ubiquitin-fold modifier 1 specific protease, ufsp2
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
461
structure length
416
Chain Sequence
b'MDILFRIRGGFDLAFQLAPPKEMFIKNALRQVLSDLTTKLSSDALVLRVCNSLWPNSDGELTDSSACKNVVRFITQQIVNIDLMLEISHYINMSLPIDAVVSVAPEESWGKVRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSPDFWNKDAYYNLCLPQRPNAL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ufm1-specific protease 2
publication title Structure of ubiquitin-fold modifier 1-specific protease UfSP2
pubmed doi rcsb
source organism Mus musculus
molecule tags Hydrolase
total genus 104
structure length 416
sequence length 461
chains with identical sequence B
ec nomenclature ec 3.4.22.-:
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07910 Peptidase_C78 Peptidase family C78
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.130 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3oqcA02
3OQCA 2Z84A
chains in the Genus database with same CATH superfamily
3H8BA 4W5CA 2FYEA 1GLOA 2R9OA 1EWPA 3TNXA 2OP3A 4PI3A 2IBIA 2E01A 5F02A 3USVA 1YZBA 1GCBA 1PVJA 1CQDA 2DZYA 4XZXA 4Q8GA 3WXEA 4IUMA 1Q6KA 2OZ2A 3MJ5A 3RVVA 1Y4HA 3LXSA 2ACTA 3BY4A 2FT2A 3IEJA 3BOWA 8PCHA 3HHAA 2Z84A 4HXDB 4R3DA 3IOQA 4BOZA 3K24A 3I06A 2DJGB 2G7YA 3MHHA 2XU5A 1MHWA 3TMPA 3KX1A 1EWMA 4YYQA 4BS6A 3PT2A 1PPOA 2PADA 1S4VA 3MTVA 2JQGR 2DC6A 2E03A 3H6SA 3LFYA 4DMYA 2R9FA 2B1NA 3OISA 4W4UA 1BGOA 4I04A 4IP3A 1STFE 1PPDA 2GHUA 2H7JA 7PCKA 3RVXA 4D8IA 3MORA 2HD5A 4BSQA 1MEGA 3WXGA 3MTNA 4PP2E 2AGAA 1EWOA 2JTCA 3BPFA 4FJCA 4QRXA 2AS8A 1SP4B 2FUDA 5J94A 1UKFA 1U5IA 2J7QC 2BDZA 4QH6A 2UZJA 1PXVA 3RNVA 1PBHA 4X6HA 1AECA 4OELA 2YJCA 2BTWA 2O6XA 2HH5A 3PHWA 4D8BA 1CSBB 2E02A 2B1MA 2PBHA 4OEMA 3WXFA 1ICFA 5PADA 4YVAA 4PP1A 4RF1A 2IPPB 1F2BA 4XR7A 4YYUA 1BY8A 1HUCB 2NQIA 1KFUL 1AYWA 4KLBA 1THEA 3ZNHA 1ATKA 4OVZB 4PT5A 3S3QA 1VSNA 4CDFB 1CVZA 1NPZA 1DKIA 1CJLA 5CHVA 2FRAA 4QBBA 1NLJA 3I3TA 3MP2A 4N79A 1IWDA 1U9VA 2JQFR 5CVMA 2FRQA 2FO5A 1NB5A 3KWBX 3PHUA 3O65A 1ME4A 1PIPA 6PADA 1AYUA 1CS8A 1KHQA 4P16A 2DC9A 3IFUA 3BC3A 4REZA 1GMYA 2AU1A 5FPWA 1SNKA 3PHXA 4MZSA 4M0WA 2ARYA 1Y08A 2AUXA 1TL9A 1F29A 1U9WA 5CVNB 1JQPA 3C9EA 3P5UA 1PPNA 3AI8A 1PADA 1CB5A 3BBAA 3O0UA 4MI7A 4I05A 2AYNA 5CHTA 2YJBA 1K3BB 1VJVA 4MM3B 3MHSA 5A24A 2DC7A 2CIOA 1NB3A 2AUZA 3P5VA 2FQ9A 3DF0A 3M99A 4BPVA 4BQVA 1PCIA 1CV8A 1CPJA 1F2CA 1QOLA 4FIPA 1AU3A 2Y5BA 4G54A 2DCAA 2DC8A 4ZTBA 2HXZA 4PADA 1GECE 2FTDA 4BOQA 1YALA 1AIMA 4K7CA 3GCBA 5EGWA 4N8WA 1YK7A 4RY2A 1BP4A 2AIMA 2CB5A 3QSDA 1QDQA 5K16A 3F5VA 1CTEA 1QXPA 2NQGA 4BS5A 3CBKA 1YT7A 4BOPA 1DEUA 3IHPA 1PE6A 1MIRA 1AU2A 2P0RA 4WURA 2BTWB 3BPMA 3OF8A 5EZSA 1YVBA 2JRIA 2G8JA 3H7DA 2J7QA 2YJ8A 4P6EA 1ZCMA 1O0EA 4WA6A 2DZZA 3PW3A 2VHFA 5JH3A 3PNRA 3B21A 1KHPA 2NQAA 2DCBA 1KFXL 3D6SA 5KO3A 2VHSA 3BB7A 1MS6A 1YK8A 2Y6EA 4YYSA 3W30A 2DCCA 3IMAA 1TU6A 1U9QX 5CVOB 4P6GA 4YYVA 3KWZA 4N4ZA 4Q8HA 2P7UA 1AYVA 1X9YA 3OQCA 3PRPA 1PPPA 1AU4A 2AVWA 3C0RA 4CDCB 3CBJA 4CDDB 3E9SA 4XUIA 3KKUA 3PSEA 4RF0A 2YJ2A 1MEMA 2XU4A 3P5WA 2C0YA 2WBFX 2DCDA 2BU3A 2PREA 1XKGA 5JA7A 3B79A 4AXMA 3P5XA 2HWKA 3V6EA 3TRKA 1TLOA 4OW0A 4BOUA 3KSEA 3E1ZB 1EWLA 3ERVA 3H8CA 3ZUAA 1ITOA 2R9NA 2YJ9A 3PDFA 3H89A 5JZEA 2AYOA 4I07A 3QT4A 4MZOA 4AXLA 1NQCA 3QJ3A 4DMXA 1KXRA 1M6DA 2P86A 2GFOA 2FE8A 1QMYA 1EF7A 2PNSA 2DOSA 3U8EA 3IV2A 1A6RA 4MSXA 3CH3X 5EZQA 4ZUXU 2NQDB 3HD3A 2G8EA 4D8EA 4BOSA 3S3RA 4X6JA 4FK5A 3OVZA 1AU0A 1DF0A 5EF4A 2G6DA 3KFQA 4HWYA 3PRMA 1MDWA 3IUTA 3HWNA 3HHIA 3RVWA 4X6IA 3BCNA 1ZIVA 3W31A 1FH0A 4CZWA 1BQIA 2F1GA 4YYWA 1NL6A 2R6NA 1POPA 4W5BA 3N3GA 4YV8A 4GUAA 4RKXA 3N3KA 4CDEB 4A5UA 3KW9A 4QRVA 9PAPA 4YYRA 2F7DA 2R9MA 3CH2X 3OF9A 4OVZA 2ATOA 4RNAA 5E6JA 3F75A 3V6CA 2HHNA 1U9XA 3K9MA 3BWKA 3N4CA 1ME3A 2XU1A 2OULA 3O1GA 2E00A 2BDLA 2XU3A 4QRGA 2DJFB 3NHEA 2R9CA 3K8UA 3OVXA 3PBHA 1F2AA
chains in the Genus database with same CATH topology
4RF1A 1YZBA 1PVJA 2FE8A 4XZXA 3ZNHA 4IUMA 2DOSA 3MJ5A 4OVZB 4PT5A 3BY4A 4BOPA 1DKIA 5EZQA 2Z84A 4HXDB 4R3DA 4D8EA 4BOSA 4WURA 2BTWB 4BOZA 5EZSA 2JRIA 2J7QA 3MP2A 3TMPA 3PT2A 3B21A 3MTVA 3PHUA 3PRMA 3O65A 5KO3A 3BB7A 4P16A 3W30A 3IFUA 3W31A 4IP3A 4REZA 3PHXA 3OQCA 3PRPA 4D8IA 3C0RA 4M0WA 4GUAA 3E9SA 4RKXA 3PSEA 4RF0A 2AGAA 4A5UA 2JTCA 2BU3A 4MI7A 3BBAA 1UKFA 2J7QC 4MM3B 2HWKA 2UZJA 4OVZA 3TRKA 4RNAA 5E6JA 3RNVA 4OW0A 4BOUA 2BTWA 3PHWA 4D8BA 5JZEA 4ZTBA 4BOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OQC A;  2Z84 A; 
#chains in the Genus database with same CATH topology
 3H8B A;  4W5C A;  2FYE A;  1GLO A;  2R9O A;  1EWP A;  3TNX A;  2OP3 A;  4PI3 A;  2IBI A;  2E01 A;  5F02 A;  3USV A;  1YZB A;  1GCB A;  1PVJ A;  1CQD A;  2DZY A;  4XZX A;  4Q8G A;  3WXE A;  4IUM A;  1Q6K A;  2OZ2 A;  3MJ5 A;  3RVV A;  1Y4H A;  3LXS A;  2ACT A;  3BY4 A;  2FT2 A;  3IEJ A;  3BOW A;  8PCH A;  3HHA A;  2Z84 A;  4HXD B;  4R3D A;  3IOQ A;  4BOZ A;  3K24 A;  3I06 A;  2DJG B;  2G7Y A;  3MHH A;  2XU5 A;  1MHW A;  3TMP A;  3KX1 A;  1EWM A;  4YYQ A;  4BS6 A;  3PT2 A;  1PPO A;  2PAD A;  1S4V A;  3MTV A;  2JQG R;  2DC6 A;  2E03 A;  3H6S A;  3LFY A;  4DMY A;  2R9F A;  2B1N A;  3OIS A;  4W4U A;  1BGO A;  4I04 A;  4IP3 A;  1STF E;  1PPD A;  2GHU A;  2H7J A;  7PCK A;  3RVX A;  4D8I A;  3MOR A;  2HD5 A;  4BSQ A;  1MEG A;  3WXG A;  3MTN A;  4PP2 E;  2AGA A;  1EWO A;  2JTC A;  3BPF A;  4FJC A;  4QRX A;  2AS8 A;  1SP4 B;  2FUD A;  5J94 A;  1UKF A;  1U5I A;  2J7Q C;  2BDZ A;  4QH6 A;  2UZJ A;  1PXV A;  3RNV A;  1PBH A;  4X6H A;  1AEC A;  4OEL A;  2YJC A;  2BTW A;  2O6X A;  2HH5 A;  3PHW A;  4D8B A;  1CSB B;  2E02 A;  2B1M A;  2PBH A;  4OEM A;  3WXF A;  1ICF A;  5PAD A;  4YVA A;  4PP1 A;  4RF1 A;  2IPP B;  1F2B A;  4XR7 A;  4YYU A;  1BY8 A;  1HUC B;  2NQI A;  1KFU L;  1AYW A;  4KLB A;  1THE A;  3ZNH A;  1ATK A;  4OVZ B;  4PT5 A;  3S3Q A;  1VSN A;  4CDF B;  1CVZ A;  1NPZ A;  1DKI A;  1CJL A;  5CHV A;  2FRA A;  4QBB A;  1NLJ A;  3I3T A;  3MP2 A;  4N79 A;  1IWD A;  1U9V A;  2JQF R;  5CVM A;  2FRQ A;  2FO5 A;  1NB5 A;  3KWB X;  3PHU A;  3O65 A;  1ME4 A;  1PIP A;  6PAD A;  1AYU A;  1CS8 A;  1KHQ A;  4P16 A;  2DC9 A;  3IFU A;  3BC3 A;  4REZ A;  1GMY A;  2AU1 A;  5FPW A;  1SNK A;  3PHX A;  4MZS A;  4M0W A;  2ARY A;  1Y08 A;  2AUX A;  1TL9 A;  1F29 A;  1U9W A;  5CVN B;  1JQP A;  3C9E A;  3P5U A;  1PPN A;  3AI8 A;  1PAD A;  1CB5 A;  3BBA A;  3O0U A;  4MI7 A;  4I05 A;  2AYN A;  5CHT A;  2YJB A;  1K3B B;  1VJV A;  4MM3 B;  3MHS A;  5A24 A;  2DC7 A;  2CIO A;  1NB3 A;  2AUZ A;  3P5V A;  2FQ9 A;  3DF0 A;  3M99 A;  4BPV A;  4BQV A;  1PCI A;  1CV8 A;  1CPJ A;  1F2C A;  1QOL A;  4FIP A;  1AU3 A;  2Y5B A;  4G54 A;  2DCA A;  2DC8 A;  4ZTB A;  2HXZ A;  4PAD A;  1GEC E;  2FTD A;  4BOQ A;  1YAL A;  1AIM A;  4K7C A;  3GCB A;  5EGW A;  4N8W A;  1YK7 A;  4RY2 A;  1BP4 A;  2AIM A;  2CB5 A;  3QSD A;  1QDQ A;  5K16 A;  3F5V A;  1CTE A;  1QXP A;  2NQG A;  4BS5 A;  3CBK A;  1YT7 A;  4BOP A;  1DEU A;  3IHP A;  1PE6 A;  1MIR A;  1AU2 A;  2P0R A;  4WUR A;  2BTW B;  3BPM A;  3OF8 A;  5EZS A;  1YVB A;  2JRI A;  2G8J A;  3H7D A;  2J7Q A;  2YJ8 A;  4P6E A;  1ZCM A;  1O0E A;  4WA6 A;  2DZZ A;  3PW3 A;  2VHF A;  5JH3 A;  3PNR A;  3B21 A;  1KHP A;  2NQA A;  2DCB A;  1KFX L;  3D6S A;  5KO3 A;  2VHS A;  3BB7 A;  1MS6 A;  1YK8 A;  2Y6E A;  4YYS A;  3W30 A;  2DCC A;  3IMA A;  1TU6 A;  1U9Q X;  5CVO B;  4P6G A;  4YYV A;  3KWZ A;  4N4Z A;  4Q8H A;  2P7U A;  1AYV A;  1X9Y A;  3OQC A;  3PRP A;  1PPP A;  1AU4 A;  2AVW A;  3C0R A;  4CDC B;  3CBJ A;  4CDD B;  3E9S A;  4XUI A;  3KKU A;  3PSE A;  4RF0 A;  2YJ2 A;  1MEM A;  2XU4 A;  3P5W A;  2C0Y A;  2WBF X;  2DCD A;  2BU3 A;  2PRE A;  1XKG A;  5JA7 A;  3B79 A;  4AXM A;  3P5X A;  2HWK A;  3V6E A;  3TRK A;  1TLO A;  4OW0 A;  4BOU A;  3KSE A;  3E1Z B;  1EWL A;  3ERV A;  3H8C A;  3ZUA A;  1ITO A;  2R9N A;  2YJ9 A;  3PDF A;  3H89 A;  5JZE A;  2AYO A;  4I07 A;  3QT4 A;  4MZO A;  4AXL A;  1NQC A;  3QJ3 A;  4DMX A;  1KXR A;  1M6D A;  2P86 A;  2GFO A;  2FE8 A;  1QMY A;  1EF7 A;  2PNS A;  2DOS A;  3U8E A;  3IV2 A;  1A6R A;  4MSX A;  3CH3 X;  5EZQ A;  4ZUX U;  2NQD B;  3HD3 A;  2G8E A;  4D8E A;  4BOS A;  3S3R A;  4X6J A;  4FK5 A;  3OVZ A;  1AU0 A;  1DF0 A;  5EF4 A;  2G6D A;  3KFQ A;  4HWY A;  3PRM A;  1MDW A;  3IUT A;  3HWN A;  3HHI A;  3RVW A;  4X6I A;  3BCN A;  1ZIV A;  3W31 A;  1FH0 A;  4CZW A;  1BQI A;  2F1G A;  4YYW A;  1NL6 A;  2R6N A;  1POP A;  4W5B A;  3N3G A;  4YV8 A;  4GUA A;  4RKX A;  3N3K A;  4CDE B;  4A5U A;  3KW9 A;  4QRV A;  9PAP A;  4YYR A;  2F7D A;  2R9M A;  3CH2 X;  3OF9 A;  4OVZ A;  2ATO A;  4RNA A;  5E6J A;  3F75 A;  3V6C A;  2HHN A;  1U9X A;  3K9M A;  3BWK A;  3N4C A;  1ME3 A;  2XU1 A;  2OUL A;  3O1G A;  2E00 A;  2BDL A;  2XU3 A;  4QRG A;  2DJF B;  3NHE A;  2R9C A;  3K8U A;  3OVX A;  3PBH A;  1F2A A; 
#chains in the Genus database with same CATH homology
 4RF1 A;  1YZB A;  1PVJ A;  2FE8 A;  4XZX A;  3ZNH A;  4IUM A;  2DOS A;  3MJ5 A;  4OVZ B;  4PT5 A;  3BY4 A;  4BOP A;  1DKI A;  5EZQ A;  2Z84 A;  4HXD B;  4R3D A;  4D8E A;  4BOS A;  4WUR A;  2BTW B;  4BOZ A;  5EZS A;  2JRI A;  2J7Q A;  3MP2 A;  3TMP A;  3PT2 A;  3B21 A;  3MTV A;  3PHU A;  3PRM A;  3O65 A;  5KO3 A;  3BB7 A;  4P16 A;  3W30 A;  3IFU A;  3W31 A;  4IP3 A;  4REZ A;  3PHX A;  3OQC A;  3PRP A;  4D8I A;  3C0R A;  4M0W A;  4GUA A;  3E9S A;  4RKX A;  3PSE A;  4RF0 A;  2AGA A;  4A5U A;  2JTC A;  2BU3 A;  4MI7 A;  3BBA A;  1UKF A;  2J7Q C;  4MM3 B;  2HWK A;  2UZJ A;  4OVZ A;  3TRK A;  4RNA A;  5E6J A;  3RNV A;  4OW0 A;  4BOU A;  2BTW A;  3PHW A;  4D8B A;  5JZE A;  4ZTB A;  4BOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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