3OQCA

Ubiquitin-fold modifier 1 specific protease, ufsp2
Total Genus 104
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
461
structure length
416
Chain Sequence
MDILFRIRGGFDLAFQLAPPKEMFIKNALRQVLSDLTTKLSSDALVLRVCNSLWPNSDGELTDSSACKNVVRFITQQIVNIDLMLEISHYINMSLPIDAVVSVAPEESWGKVRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSPDFWNKDAYYNLCLPQRPNAL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Ufm1-specific protease 2
publication title Structure of ubiquitin-fold modifier 1-specific protease UfSP2
pubmed doi rcsb
source organism Mus musculus
molecule tags Hydrolase
total genus 104
structure length 416
sequence length 461
chains with identical sequence B
ec nomenclature ec 3.4.22.-:
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07910 Peptidase_C78 Peptidase family C78
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.130 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3oqcA02
3OQCA 2Z84A
chains in the Genus database with same CATH superfamily
1ITOA 4KLBA 4R3DA 1NLJA 4P16A 4I04A 4MI7A 4RF1A 1SNKA 2FRQA 3MTVA 3W30A 2H7JA 5JA7A 2DJFB 2BDLA 1U9XA 4OW0A 2O6XA 2NQGA 5EZSA 4BOZA 1XKGA 3OISA 2Y5BA 4REZA 3HHAA 3RNVA 2P0RA 3CBJA 3PSEA 3AI8A 5PADA 2DZZA 5EZQA 3TMPA 1KFXL 3KW9A 3P5XA 2YJ2A 3IOQA 3OVXA 1YZBA 2XU1A 3MTNA 3MHHA 2ARYA 2BTWA 3O65A 2G8EA 3QSDA 4IUMA 4YYVA 2R9CA 2BDZA 2CB5A 2J7QC 3B21A 4YYQA 2OP3A 3F5VA 3KKUA 1EWPA 1AU3A 1AYUA 2CIOA 4PP2E 4MM3B 5EGWA 4PADA 1ATKA 1EWLA 4W5CA 2AGAA 2JRIA 3WXGA 3H8CA 4RNAA 2F1GA 2FT2A 3BC3A 2FE8A 1MEGA 3PHWA 1DEUA 2YJ9A 1CQDA 3WXFA 3P5VA 4RKXA 1U9WA 3PNRA 4D8BA 3ZNHA 1AU0A 2E00A 4DMYA 1KXRA 3MHSA 1YK7A 3S3RA 1F2BA 1MEMA 2DC7A 1U9QX 2JQFR 6PADA 5CHTA 2Y6EA 4FJCA 4CZWA 1CB5A 3DF0A 2FO5A 3BB7A 1AYVA 2AYOA 3HD3A 4HXDB 4BS6A 3H8BA 3N3GA 3F75A 1YK8A 4PI3A 1PBHA 2AIMA 1TLOA 1ME3A 4N79A 3PHUA 4RF0A 2E02A 4QBBA 1GCBA 3U8EA 1YALA 1NPZA 1MS6A 3KX1A 3OQCA 2FTDA 1A6RA 1CVZA 4GUAA 4BSQA 1ZIVA 2DCBA 1DKIA 1HUCB 1YT7A 3PHXA 3P5WA 3O0UA 5CHVA 4M0WA 1F2CA 4YV8A 4PT5A 2G8JA 4QRGA 2G6DA 3CBKA 1MHWA 4I07A 4CDCB 9PAPA 3OVZA 4CDFB 1MIRA 2R9NA 5CVMA 3BOWA 1U9VA 4YYWA 4BOUA 1QOLA 1EWOA 2B1MA 2XU5A 3I06A 1IWDA 4X6HA 3IUTA 4X6JA 3PRPA 3OF8A 1M6DA 5K16A 4DMXA 1AU2A 2HXZA 3V6CA 1YVBA 4MZOA 3BBAA 1VJVA 1Q6KA 3IHPA 2JQGR 3NHEA 5E6JA 1MDWA 1GLOA 1THEA 3W31A 4BPVA 3E9SA 2IPPB 3IMAA 1VSNA 5F02A 3QT4A 4YYUA 3LFYA 1NB3A 2PNSA 3MP2A 2R6NA 1F2AA 3KWZA 3E1ZB 3KFQA 2BTWB 2AU1A 2DOSA 2OZ2A 1AU4A 2PREA 4XR7A 3BPMA 3HWNA 4W4UA 5CVNB 2HHNA 3QJ3A 2UZJA 1KHPA 4YVAA 1O0EA 3K24A 4YYSA 5A24A 3PBHA 3TNXA 2R9FA 4P6GA 2BU3A 2DC8A 4XUIA 3RVVA 5EF4A 2AVWA 3CH2X 4I05A 3ZUAA 2DC9A 2R9MA 3HHIA 4MSXA 1AYWA 3V6EA 3K9MA 2HD5A 3C9EA 3ERVA 1PADA 3B79A 4XZXA 4QRVA 1ZCMA 1Y4HA 3D6SA 2FQ9A 3N4CA 4WA6A 1F29A 2ATOA 3H89A 4N4ZA 4X6IA 3IV2A 3N3KA 4A5UA 4ZUXU 2DZYA 1K3BB 1GMYA 4CDDB 4P6EA 3H6SA 3KWBX 1PPPA 2DCDA 1BY8A 2DCCA 2FUDA 2OULA 2IBIA 2NQIA 2VHSA 5JH3A 1QDQA 7PCKA 1QXPA 1DF0A 3RVWA 3IEJA 1AIMA 2FYEA 1JQPA 1GECE 1QMYA 1PPOA 2ACTA 3BCNA 4D8EA 4MZSA 2G7YA 1UKFA 2AYNA 1ICFA 1PPDA 4IP3A 4AXLA 2F7DA 5KO3A 3I3TA 2GHUA 1Y08A 1PVJA 4OVZA 3WXEA 1TU6A 2E01A 3H7DA 2YJCA 1U5IA 1BP4A 3PT2A 5J94A 3BY4A 4AXMA 2AUZA 4BOSA 4QRXA 2HWKA 1S4VA 1CS8A 2DC6A 2J7QA 4CDEB 2YJ8A 3GCBA 1EWMA 3BPFA 4N8WA 4FIPA 4OVZB 4OELA 1NQCA 1POPA 1TL9A 4Q8HA 4W5BA 3K8UA 4WURA 2Z84A 3S3QA 4G54A 1CJLA 2WBFX 1STFE 5FPWA 4BOPA 2NQAA 1BQIA 4D8IA 2JTCA 4FK5A 1X9YA 2PBHA 1CV8A 1KFUL 3O1GA 1KHQA 1NB5A 3CH3X 1PE6A 3PW3A 2P7UA 2PADA 1CSBB 1CTEA 5JZEA 1PIPA 3MORA 1AECA 2NQDB 2YJBA 4ZTBA 2XU4A 4PP1A 1NL6A 3OF9A 4Q8GA 2XU3A 2GFOA 1ME4A 4HWYA 8PCHA 1CPJA 2C0YA 1PPNA 2E03A 4K7CA 2B1NA 1PCIA 3USVA 4BS5A 3KSEA 5CVOB 2FRAA 3P5UA 2VHFA 3MJ5A 4BQVA 4RY2A 1EF7A 2AUXA 1PXVA 2R9OA 2DJGB 3BWKA 2DCAA 3PRMA 1SP4B 3M99A 2AS8A 3TRKA 3IFUA 3C0RA 4QH6A 1BGOA 3RVXA 2P86A 1FH0A 4BOQA 2HH5A 4OEMA 3PDFA 3LXSA 4YYRA
chains in the Genus database with same CATH topology
4R3DA 2UZJA 4HXDB 4P16A 3PT2A 4MI7A 4RF1A 3BY4A 3MTVA 3W30A 4BOSA 2HWKA 2BU3A 4OW0A 2J7QA 3PHUA 4RF0A 5EZSA 4BOZA 4OVZB 3OQCA 4REZA 3RNVA 3PSEA 4GUAA 5EZQA 3TMPA 4WURA 2Z84A 1DKIA 3PHXA 4XZXA 4M0WA 1YZBA 4BOPA 4PT5A 2BTWA 3O65A 4D8IA 2JTCA 4IUMA 2J7QC 3B21A 4A5UA 4MM3B 4BOUA 5JZEA 3PRPA 4ZTBA 2AGAA 2JRIA 4RNAA 2FE8A 3PHWA 3BBAA 4RKXA 4D8BA 5E6JA 3ZNHA 3MJ5A 4D8EA 3W31A 1UKFA 3E9SA 4IP3A 3MP2A 3PRMA 3TRKA 3IFUA 2BTWB 2DOSA 3C0RA 5KO3A 4BOQA 1PVJA 4OVZA 3BB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OQC A;  2Z84 A; 
#chains in the Genus database with same CATH topology
 1ITO A;  4KLB A;  4R3D A;  1NLJ A;  4P16 A;  4I04 A;  4MI7 A;  4RF1 A;  1SNK A;  2FRQ A;  3MTV A;  3W30 A;  2H7J A;  5JA7 A;  2DJF B;  2BDL A;  1U9X A;  4OW0 A;  2O6X A;  2NQG A;  5EZS A;  4BOZ A;  1XKG A;  3OIS A;  2Y5B A;  4REZ A;  3HHA A;  3RNV A;  2P0R A;  3CBJ A;  3PSE A;  3AI8 A;  5PAD A;  2DZZ A;  5EZQ A;  3TMP A;  1KFX L;  3KW9 A;  3P5X A;  2YJ2 A;  3IOQ A;  3OVX A;  1YZB A;  2XU1 A;  3MTN A;  3MHH A;  2ARY A;  2BTW A;  3O65 A;  2G8E A;  3QSD A;  4IUM A;  4YYV A;  2R9C A;  2BDZ A;  2CB5 A;  2J7Q C;  3B21 A;  4YYQ A;  2OP3 A;  3F5V A;  3KKU A;  1EWP A;  1AU3 A;  1AYU A;  2CIO A;  4PP2 E;  4MM3 B;  5EGW A;  4PAD A;  1ATK A;  1EWL A;  4W5C A;  2AGA A;  2JRI A;  3WXG A;  3H8C A;  4RNA A;  2F1G A;  2FT2 A;  3BC3 A;  2FE8 A;  1MEG A;  3PHW A;  1DEU A;  2YJ9 A;  1CQD A;  3WXF A;  3P5V A;  4RKX A;  1U9W A;  3PNR A;  4D8B A;  3ZNH A;  1AU0 A;  2E00 A;  4DMY A;  1KXR A;  3MHS A;  1YK7 A;  3S3R A;  1F2B A;  1MEM A;  2DC7 A;  1U9Q X;  2JQF R;  6PAD A;  5CHT A;  2Y6E A;  4FJC A;  4CZW A;  1CB5 A;  3DF0 A;  2FO5 A;  3BB7 A;  1AYV A;  2AYO A;  3HD3 A;  4HXD B;  4BS6 A;  3H8B A;  3N3G A;  3F75 A;  1YK8 A;  4PI3 A;  1PBH A;  2AIM A;  1TLO A;  1ME3 A;  4N79 A;  3PHU A;  4RF0 A;  2E02 A;  4QBB A;  1GCB A;  3U8E A;  1YAL A;  1NPZ A;  1MS6 A;  3KX1 A;  3OQC A;  2FTD A;  1A6R A;  1CVZ A;  4GUA A;  4BSQ A;  1ZIV A;  2DCB A;  1DKI A;  1HUC B;  1YT7 A;  3PHX A;  3P5W A;  3O0U A;  5CHV A;  4M0W A;  1F2C A;  4YV8 A;  4PT5 A;  2G8J A;  4QRG A;  2G6D A;  3CBK A;  1MHW A;  4I07 A;  4CDC B;  9PAP A;  3OVZ A;  4CDF B;  1MIR A;  2R9N A;  5CVM A;  3BOW A;  1U9V A;  4YYW A;  4BOU A;  1QOL A;  1EWO A;  2B1M A;  2XU5 A;  3I06 A;  1IWD A;  4X6H A;  3IUT A;  4X6J A;  3PRP A;  3OF8 A;  1M6D A;  5K16 A;  4DMX A;  1AU2 A;  2HXZ A;  3V6C A;  1YVB A;  4MZO A;  3BBA A;  1VJV A;  1Q6K A;  3IHP A;  2JQG R;  3NHE A;  5E6J A;  1MDW A;  1GLO A;  1THE A;  3W31 A;  4BPV A;  3E9S A;  2IPP B;  3IMA A;  1VSN A;  5F02 A;  3QT4 A;  4YYU A;  3LFY A;  1NB3 A;  2PNS A;  3MP2 A;  2R6N A;  1F2A A;  3KWZ A;  3E1Z B;  3KFQ A;  2BTW B;  2AU1 A;  2DOS A;  2OZ2 A;  1AU4 A;  2PRE A;  4XR7 A;  3BPM A;  3HWN A;  4W4U A;  5CVN B;  2HHN A;  3QJ3 A;  2UZJ A;  1KHP A;  4YVA A;  1O0E A;  3K24 A;  4YYS A;  5A24 A;  3PBH A;  3TNX A;  2R9F A;  4P6G A;  2BU3 A;  2DC8 A;  4XUI A;  3RVV A;  5EF4 A;  2AVW A;  3CH2 X;  4I05 A;  3ZUA A;  2DC9 A;  2R9M A;  3HHI A;  4MSX A;  1AYW A;  3V6E A;  3K9M A;  2HD5 A;  3C9E A;  3ERV A;  1PAD A;  3B79 A;  4XZX A;  4QRV A;  1ZCM A;  1Y4H A;  3D6S A;  2FQ9 A;  3N4C A;  4WA6 A;  1F29 A;  2ATO A;  3H89 A;  4N4Z A;  4X6I A;  3IV2 A;  3N3K A;  4A5U A;  4ZUX U;  2DZY A;  1K3B B;  1GMY A;  4CDD B;  4P6E A;  3H6S A;  3KWB X;  1PPP A;  2DCD A;  1BY8 A;  2DCC A;  2FUD A;  2OUL A;  2IBI A;  2NQI A;  2VHS A;  5JH3 A;  1QDQ A;  7PCK A;  1QXP A;  1DF0 A;  3RVW A;  3IEJ A;  1AIM A;  2FYE A;  1JQP A;  1GEC E;  1QMY A;  1PPO A;  2ACT A;  3BCN A;  4D8E A;  4MZS A;  2G7Y A;  1UKF A;  2AYN A;  1ICF A;  1PPD A;  4IP3 A;  4AXL A;  2F7D A;  5KO3 A;  3I3T A;  2GHU A;  1Y08 A;  1PVJ A;  4OVZ A;  3WXE A;  1TU6 A;  2E01 A;  3H7D A;  2YJC A;  1U5I A;  1BP4 A;  3PT2 A;  5J94 A;  3BY4 A;  4AXM A;  2AUZ A;  4BOS A;  4QRX A;  2HWK A;  1S4V A;  1CS8 A;  2DC6 A;  2J7Q A;  4CDE B;  2YJ8 A;  3GCB A;  1EWM A;  3BPF A;  4N8W A;  4FIP A;  4OVZ B;  4OEL A;  1NQC A;  1POP A;  1TL9 A;  4Q8H A;  4W5B A;  3K8U A;  4WUR A;  2Z84 A;  3S3Q A;  4G54 A;  1CJL A;  2WBF X;  1STF E;  5FPW A;  4BOP A;  2NQA A;  1BQI A;  4D8I A;  2JTC A;  4FK5 A;  1X9Y A;  2PBH A;  1CV8 A;  1KFU L;  3O1G A;  1KHQ A;  1NB5 A;  3CH3 X;  1PE6 A;  3PW3 A;  2P7U A;  2PAD A;  1CSB B;  1CTE A;  5JZE A;  1PIP A;  3MOR A;  1AEC A;  2NQD B;  2YJB A;  4ZTB A;  2XU4 A;  4PP1 A;  1NL6 A;  3OF9 A;  4Q8G A;  2XU3 A;  2GFO A;  1ME4 A;  4HWY A;  8PCH A;  1CPJ A;  2C0Y A;  1PPN A;  2E03 A;  4K7C A;  2B1N A;  1PCI A;  3USV A;  4BS5 A;  3KSE A;  5CVO B;  2FRA A;  3P5U A;  2VHF A;  3MJ5 A;  4BQV A;  4RY2 A;  1EF7 A;  2AUX A;  1PXV A;  2R9O A;  2DJG B;  3BWK A;  2DCA A;  3PRM A;  1SP4 B;  3M99 A;  2AS8 A;  3TRK A;  3IFU A;  3C0R A;  4QH6 A;  1BGO A;  3RVX A;  2P86 A;  1FH0 A;  4BOQ A;  2HH5 A;  4OEM A;  3PDF A;  3LXS A;  4YYR A; 
#chains in the Genus database with same CATH homology
 4R3D A;  2UZJ A;  4HXD B;  4P16 A;  3PT2 A;  4MI7 A;  4RF1 A;  3BY4 A;  3MTV A;  3W30 A;  4BOS A;  2HWK A;  2BU3 A;  4OW0 A;  2J7Q A;  3PHU A;  4RF0 A;  5EZS A;  4BOZ A;  4OVZ B;  3OQC A;  4REZ A;  3RNV A;  3PSE A;  4GUA A;  5EZQ A;  3TMP A;  4WUR A;  2Z84 A;  1DKI A;  3PHX A;  4XZX A;  4M0W A;  1YZB A;  4BOP A;  4PT5 A;  2BTW A;  3O65 A;  4D8I A;  2JTC A;  4IUM A;  2J7Q C;  3B21 A;  4A5U A;  4MM3 B;  4BOU A;  5JZE A;  3PRP A;  4ZTB A;  2AGA A;  2JRI A;  4RNA A;  2FE8 A;  3PHW A;  3BBA A;  4RKX A;  4D8B A;  5E6J A;  3ZNH A;  3MJ5 A;  4D8E A;  3W31 A;  1UKF A;  3E9S A;  4IP3 A;  3MP2 A;  3PRM A;  3TRK A;  3IFU A;  2BTW B;  2DOS A;  3C0R A;  5KO3 A;  4BOQ A;  1PVJ A;  4OVZ A;  3BB7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...