3OQCA

Ubiquitin-fold modifier 1 specific protease, ufsp2
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
461
structure length
416
Chain Sequence
MDILFRIRGGFDLAFQLAPPKEMFIKNALRQVLSDLTTKLSSDALVLRVCNSLWPNSDGELTDSSACKNVVRFITQQIVNIDLMLEISHYINMSLPIDAVVSVAPEESWGKVRKLLVDAILRQLVDVEKCILRYMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRINAYHFPDELYKDGYIRNPHTYLSPPNIEGSMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGVTSKILFVNQGSEMASQGRELANHFQNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEKGWCGWKSPDFWNKDAYYNLCLPQRPNAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of ubiquitin-fold modifier 1-specific protease UfSP2
pubmed doi rcsb
source organism Mus musculus
molecule tags Hydrolase
molecule keywords Ufm1-specific protease 2
total genus 104
structure length 416
sequence length 461
chains with identical sequence B
ec nomenclature ec 3.4.22.-:
pdb deposition date 2010-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07910 Peptidase_C78 Peptidase family C78
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.130 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3oqcA02
3OQCA 2Z84A
chains in the Genus database with same CATH superfamily
1FH0A 3OVXA 4DMXA 1YVBA 2R9MA 4MM3B 1PCIA 4MI7A 3ZNHA 1MEMA 3O1GA 1K3BB 1ZIVA 4G54A 4AXMA 8PCHA 4P6EA 2IBIA 1IWDA 3W30A 1PIPA 3PHWA 2AS8A 1AU4A 1QMYA 4RY2A 1CPJA 4ZUXU 1KFUL 2BDLA 4XUIA 4W4UA 1NPZA 1X9YA 1SP4B 1GLOA 2ATOA 2VHFA 2F7DA 4X6JA 3IV2A 5PADA 3MTVA 1BGOA 1ME3A 3RVVA 2FTDA 3GCBA 1Q6KA 3KX1A 4MSXA 2FUDA 1F29A 4M0WA 4RF0A 2B1MA 5E6JA 2ARYA 2BDZA 3MHSA 2H7JA 1THEA 1F2CA 4GUAA 2YJ9A 3BBAA 3KFQA 3N3GA 5FPWA 3V6CA 3NHEA 3ERVA 2DZZA 1MEGA 1KXRA 5CVNB 1UKFA 1QOLA 1TU6A 4OEMA 3PW3A 2DCAA 1TLOA 1POPA 1TL9A 3PBHA 3OQCA 2PREA 2AYNA 2YJ8A 4A5UA 1A6RA 1NB5A 2JQGR 2XU3A 2WBFX 1SNKA 3MJ5A 4MZSA 2OULA 1MIRA 4BOQA 1ZCMA 2Y5BA 1BP4A 3C9EA 2G6DA 2ACTA 3PT2A 1HUCB 1PPOA 2R6NA 3H6SA 1CSBB 5JZEA 4Q8GA 3IOQA 4DMYA 1AYWA 5CHVA 4YYVA 1NL6A 4CDCB 1JQPA 3H8BA 3CH2X 2AU1A 3PHXA 4XR7A 1EWOA 3P5WA 2AUXA 1PPDA 2HXZA 4W5BA 1EF7A 2FRQA 2C0YA 2E02A 2DC8A 2YJCA 2DC6A 3DF0A 2YJBA 1QDQA 1Y4HA 4MZOA 4AXLA 2BTWB 2PBHA 3O65A 1VSNA 4HWYA 4HXDB 2NQGA 2F1GA 2O6XA 3PDFA 3E1ZB 2DC9A 3QJ3A 4FIPA 5EZSA 1AU3A 4PP1A 3O0UA 1AECA 1YK7A 4CZWA 4YYRA 1BQIA 2NQAA 3B21A 4XZXA 4BPVA 2JQFR 2AUZA 5EGWA 3CBJA 4YYUA 1O0EA 2DC7A 3IFUA 1YZBA 3KW9A 4K7CA 2R9NA 4BS6A 2XU1A 3OISA 3IHPA 3LXSA 5KO3A 2B1NA 2XU4A 1EWMA 2VHSA 2E01A 2G8EA 4FJCA 2IPPB 3S3RA 3W31A 1YALA 3MORA 1PE6A 4RKXA 3KKUA 1CTEA 4OVZA 2OZ2A 1YT7A 1AYUA 2E03A 3TRKA 3OVZA 3IMAA 2OP3A 1U5IA 3M99A 3PRPA 3S3QA 3AI8A 2JTCA 3TNXA 1PPPA 3E9SA 3BPFA 1AU2A 2AIMA 4WA6A 4R3DA 2YJ2A 3USVA 4RNAA 3QSDA 1MHWA 4BOUA 4YV8A 4BOSA 3MTNA 3TMPA 1DF0A 2DCCA 1PVJA 2AVWA 4BOZA 4QBBA 2P0RA 4PP2E 1CB5A 4N8WA 2FT2A 5CVMA 2P86A 4CDEB 2J7QA 4FK5A 2BU3A 4D8EA 3RVWA 1GECE 1PBHA 2J7QC 4YYSA 3B79A 2DJFB 2HWKA 2PADA 3WXFA 2FQ9A 1EWLA 3K9MA 3HWNA 5EF4A 5EZQA 4N79A 4YYWA 1U9QX 1GMYA 2FYEA 5JH3A 2HHNA 4OVZB 4P16A 1ITOA 3KSEA 4IUMA 4BQVA 3HHAA 1U9XA 1MDWA 1S4VA 5F02A 4OELA 2DJGB 4YVAA 2Z84A 3BWKA 3WXEA 2PNSA 1PXVA 4QRGA 3IUTA 4ZTBA 1DEUA 3K24A 2DCBA 2G8JA 3H8CA 2GFOA 4QRVA 1DKIA 1KFXL 2FE8A 1Y08A 3QT4A 1ATKA 3N3KA 3I06A 1AIMA 3HHIA 2Y6EA 2FRAA 3MHHA 2AYOA 1U9VA 2AGAA 3I3TA 4KLBA 1CJLA 1CS8A 3C0RA 4Q8HA 1ICFA 3BOWA 1ME4A 1CV8A 1EWPA 1AU0A 3PRMA 4CDFB 3KWBX 4QH6A 4BSQA 3BC3A 1F2BA 3HD3A 3PNRA 3ZUAA 5A24A 3D6SA 5J94A 1M6DA 2P7UA 4W5CA 1XKGA 4P6GA 3N4CA 2GHUA 2R9FA 3BB7A 2E00A 4X6HA 2DCDA 2CB5A 1CVZA 2XU5A 1NLJA 1KHPA 1AYVA 3BPMA 1YK8A 3MP2A 1VJVA 4BOPA 2JRIA 1QXPA 1PADA 4PT5A 3IEJA 3RVXA 5JA7A 3KWZA 2HD5A 2NQDB 1NB3A 3F5VA 2CIOA 7PCKA 3BCNA 5CHTA 1STFE 4IP3A 3BY4A 2DOSA 3P5XA 4WURA 4QRXA 5K16A 2HH5A 4D8IA 3P5VA 5CVOB 1MS6A 4RF1A 2BTWA 3PSEA 3WXGA 4OW0A 4I05A 1CQDA 1GCBA 3OF8A 4REZA 4X6IA 1NQCA 2NQIA 2R9CA 3CBKA 3PHUA 4D8BA 4PI3A 3H7DA 3K8UA 3H89A 3LFYA 4I04A 4PADA 9PAPA 2UZJA 1F2AA 1KHQA 1U9WA 2G7YA 3V6EA 4CDDB 2DZYA 3CH3X 3F75A 1PPNA 3P5UA 4N4ZA 3OF9A 2R9OA 4YYQA 1BY8A 4I07A 3RNVA 3U8EA 4BS5A 6PADA 2FO5A
chains in the Genus database with same CATH topology
3B21A 2BU3A 4XZXA 1DKIA 2FE8A 5E6JA 4D8EA 4IP3A 4R3DA 3PT2A 3W31A 3BY4A 2DOSA 4OVZB 4WURA 4P16A 4RNAA 4MM3B 3OQCA 2UZJA 2J7QC 3MP2A 4MI7A 3ZNHA 4IUMA 2BTWB 4RKXA 3O65A 4BOUA 2AGAA 5JZEA 4GUAA 4HXDB 3MTVA 3BBAA 3C0RA 3IFUA 2HWKA 4BOSA 4BOPA 4OVZA 4D8IA 3TMPA 2JRIA 4A5UA 1PVJA 1YZBA 4RF1A 4BOZA 2Z84A 2BTWA 4PT5A 3PSEA 5EZSA 3PHWA 3W30A 4OW0A 3TRKA 3MJ5A 3PHXA 3BB7A 3PRMA 4REZA 3PRPA 5EZQA 4BOQA 3RNVA 1UKFA 2JTCA 3PHUA 4ZTBA 5KO3A 3E9SA 4D8BA 4RF0A 4M0WA 2J7QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OQC A;  2Z84 A; 
#chains in the Genus database with same CATH topology
 1FH0 A;  3OVX A;  4DMX A;  1YVB A;  2R9M A;  4MM3 B;  1PCI A;  4MI7 A;  3ZNH A;  1MEM A;  3O1G A;  1K3B B;  1ZIV A;  4G54 A;  4AXM A;  8PCH A;  4P6E A;  2IBI A;  1IWD A;  3W30 A;  1PIP A;  3PHW A;  2AS8 A;  1AU4 A;  1QMY A;  4RY2 A;  1CPJ A;  4ZUX U;  1KFU L;  2BDL A;  4XUI A;  4W4U A;  1NPZ A;  1X9Y A;  1SP4 B;  1GLO A;  2ATO A;  2VHF A;  2F7D A;  4X6J A;  3IV2 A;  5PAD A;  3MTV A;  1BGO A;  1ME3 A;  3RVV A;  2FTD A;  3GCB A;  1Q6K A;  3KX1 A;  4MSX A;  2FUD A;  1F29 A;  4M0W A;  4RF0 A;  2B1M A;  5E6J A;  2ARY A;  2BDZ A;  3MHS A;  2H7J A;  1THE A;  1F2C A;  4GUA A;  2YJ9 A;  3BBA A;  3KFQ A;  3N3G A;  5FPW A;  3V6C A;  3NHE A;  3ERV A;  2DZZ A;  1MEG A;  1KXR A;  5CVN B;  1UKF A;  1QOL A;  1TU6 A;  4OEM A;  3PW3 A;  2DCA A;  1TLO A;  1POP A;  1TL9 A;  3PBH A;  3OQC A;  2PRE A;  2AYN A;  2YJ8 A;  4A5U A;  1A6R A;  1NB5 A;  2JQG R;  2XU3 A;  2WBF X;  1SNK A;  3MJ5 A;  4MZS A;  2OUL A;  1MIR A;  4BOQ A;  1ZCM A;  2Y5B A;  1BP4 A;  3C9E A;  2G6D A;  2ACT A;  3PT2 A;  1HUC B;  1PPO A;  2R6N A;  3H6S A;  1CSB B;  5JZE A;  4Q8G A;  3IOQ A;  4DMY A;  1AYW A;  5CHV A;  4YYV A;  1NL6 A;  4CDC B;  1JQP A;  3H8B A;  3CH2 X;  2AU1 A;  3PHX A;  4XR7 A;  1EWO A;  3P5W A;  2AUX A;  1PPD A;  2HXZ A;  4W5B A;  1EF7 A;  2FRQ A;  2C0Y A;  2E02 A;  2DC8 A;  2YJC A;  2DC6 A;  3DF0 A;  2YJB A;  1QDQ A;  1Y4H A;  4MZO A;  4AXL A;  2BTW B;  2PBH A;  3O65 A;  1VSN A;  4HWY A;  4HXD B;  2NQG A;  2F1G A;  2O6X A;  3PDF A;  3E1Z B;  2DC9 A;  3QJ3 A;  4FIP A;  5EZS A;  1AU3 A;  4PP1 A;  3O0U A;  1AEC A;  1YK7 A;  4CZW A;  4YYR A;  1BQI A;  2NQA A;  3B21 A;  4XZX A;  4BPV A;  2JQF R;  2AUZ A;  5EGW A;  3CBJ A;  4YYU A;  1O0E A;  2DC7 A;  3IFU A;  1YZB A;  3KW9 A;  4K7C A;  2R9N A;  4BS6 A;  2XU1 A;  3OIS A;  3IHP A;  3LXS A;  5KO3 A;  2B1N A;  2XU4 A;  1EWM A;  2VHS A;  2E01 A;  2G8E A;  4FJC A;  2IPP B;  3S3R A;  3W31 A;  1YAL A;  3MOR A;  1PE6 A;  4RKX A;  3KKU A;  1CTE A;  4OVZ A;  2OZ2 A;  1YT7 A;  1AYU A;  2E03 A;  3TRK A;  3OVZ A;  3IMA A;  2OP3 A;  1U5I A;  3M99 A;  3PRP A;  3S3Q A;  3AI8 A;  2JTC A;  3TNX A;  1PPP A;  3E9S A;  3BPF A;  1AU2 A;  2AIM A;  4WA6 A;  4R3D A;  2YJ2 A;  3USV A;  4RNA A;  3QSD A;  1MHW A;  4BOU A;  4YV8 A;  4BOS A;  3MTN A;  3TMP A;  1DF0 A;  2DCC A;  1PVJ A;  2AVW A;  4BOZ A;  4QBB A;  2P0R A;  4PP2 E;  1CB5 A;  4N8W A;  2FT2 A;  5CVM A;  2P86 A;  4CDE B;  2J7Q A;  4FK5 A;  2BU3 A;  4D8E A;  3RVW A;  1GEC E;  1PBH A;  2J7Q C;  4YYS A;  3B79 A;  2DJF B;  2HWK A;  2PAD A;  3WXF A;  2FQ9 A;  1EWL A;  3K9M A;  3HWN A;  5EF4 A;  5EZQ A;  4N79 A;  4YYW A;  1U9Q X;  1GMY A;  2FYE A;  5JH3 A;  2HHN A;  4OVZ B;  4P16 A;  1ITO A;  3KSE A;  4IUM A;  4BQV A;  3HHA A;  1U9X A;  1MDW A;  1S4V A;  5F02 A;  4OEL A;  2DJG B;  4YVA A;  2Z84 A;  3BWK A;  3WXE A;  2PNS A;  1PXV A;  4QRG A;  3IUT A;  4ZTB A;  1DEU A;  3K24 A;  2DCB A;  2G8J A;  3H8C A;  2GFO A;  4QRV A;  1DKI A;  1KFX L;  2FE8 A;  1Y08 A;  3QT4 A;  1ATK A;  3N3K A;  3I06 A;  1AIM A;  3HHI A;  2Y6E A;  2FRA A;  3MHH A;  2AYO A;  1U9V A;  2AGA A;  3I3T A;  4KLB A;  1CJL A;  1CS8 A;  3C0R A;  4Q8H A;  1ICF A;  3BOW A;  1ME4 A;  1CV8 A;  1EWP A;  1AU0 A;  3PRM A;  4CDF B;  3KWB X;  4QH6 A;  4BSQ A;  3BC3 A;  1F2B A;  3HD3 A;  3PNR A;  3ZUA A;  5A24 A;  3D6S A;  5J94 A;  1M6D A;  2P7U A;  4W5C A;  1XKG A;  4P6G A;  3N4C A;  2GHU A;  2R9F A;  3BB7 A;  2E00 A;  4X6H A;  2DCD A;  2CB5 A;  1CVZ A;  2XU5 A;  1NLJ A;  1KHP A;  1AYV A;  3BPM A;  1YK8 A;  3MP2 A;  1VJV A;  4BOP A;  2JRI A;  1QXP A;  1PAD A;  4PT5 A;  3IEJ A;  3RVX A;  5JA7 A;  3KWZ A;  2HD5 A;  2NQD B;  1NB3 A;  3F5V A;  2CIO A;  7PCK A;  3BCN A;  5CHT A;  1STF E;  4IP3 A;  3BY4 A;  2DOS A;  3P5X A;  4WUR A;  4QRX A;  5K16 A;  2HH5 A;  4D8I A;  3P5V A;  5CVO B;  1MS6 A;  4RF1 A;  2BTW A;  3PSE A;  3WXG A;  4OW0 A;  4I05 A;  1CQD A;  1GCB A;  3OF8 A;  4REZ A;  4X6I A;  1NQC A;  2NQI A;  2R9C A;  3CBK A;  3PHU A;  4D8B A;  4PI3 A;  3H7D A;  3K8U A;  3H89 A;  3LFY A;  4I04 A;  4PAD A;  9PAP A;  2UZJ A;  1F2A A;  1KHQ A;  1U9W A;  2G7Y A;  3V6E A;  4CDD B;  2DZY A;  3CH3 X;  3F75 A;  1PPN A;  3P5U A;  4N4Z A;  3OF9 A;  2R9O A;  4YYQ A;  1BY8 A;  4I07 A;  3RNV A;  3U8E A;  4BS5 A;  6PAD A;  2FO5 A; 
#chains in the Genus database with same CATH homology
 3B21 A;  2BU3 A;  4XZX A;  1DKI A;  2FE8 A;  5E6J A;  4D8E A;  4IP3 A;  4R3D A;  3PT2 A;  3W31 A;  3BY4 A;  2DOS A;  4OVZ B;  4WUR A;  4P16 A;  4RNA A;  4MM3 B;  3OQC A;  2UZJ A;  2J7Q C;  3MP2 A;  4MI7 A;  3ZNH A;  4IUM A;  2BTW B;  4RKX A;  3O65 A;  4BOU A;  2AGA A;  5JZE A;  4GUA A;  4HXD B;  3MTV A;  3BBA A;  3C0R A;  3IFU A;  2HWK A;  4BOS A;  4BOP A;  4OVZ A;  4D8I A;  3TMP A;  2JRI A;  4A5U A;  1PVJ A;  1YZB A;  4RF1 A;  4BOZ A;  2Z84 A;  2BTW A;  4PT5 A;  3PSE A;  5EZS A;  3PHW A;  3W30 A;  4OW0 A;  3TRK A;  3MJ5 A;  3PHX A;  3BB7 A;  3PRM A;  4REZ A;  3PRP A;  5EZQ A;  4BOQ A;  3RNV A;  1UKF A;  2JTC A;  3PHU A;  4ZTB A;  5KO3 A;  3E9S A;  4D8B A;  4RF0 A;  4M0W A;  2J7Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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