3PRMA

Structural analysis of a viral otu domain protease from the crimean-congo hemorrhagic fever virus in complex with human ubiquitin
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
161
structure length
161
Chain Sequence
DFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase
molecule keywords L protein
publication title Structural analysis of a viral ovarian tumor domain protease from the crimean-congo hemorrhagic Fever virus in complex with covalently bonded ubiquitin.
pubmed doi rcsb
source organism Crimean-congo hemorrhagic fever virus
total genus 40
structure length 161
sequence length 161
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 3prmA00
3C0RA 3PRMA 4HXDB 3ZNHA 4BOSA 3PHXA 4BOUA 3PHWA 4BOZA 3TMPA 4BOPA 4BOQA 3PT2A 5JZEA 3PSEA 3PRPA 3BY4A 3PHUA
chains in the Genus database with same CATH superfamily
3MHHA 5E6JA 2PNSA 2P7UA 3OVXA 2BU3A 3RNVA 1CPJA 3PDFA 1CTEA 1PPPA 1AU2A 2NQDB 1DKIA 3PBHA 1CJLA 1CSBB 2G7YA 1AYWA 1BY8A 1U9VA 1NL6A 1O0EA 1AU4A 2AVWA 4RY2A 3D6SA 1GECE 3IMAA 1Y08A 2DZZA 3P5WA 4CDFB 5JA7A 1PCIA 2P86A 1PPNA 4AXLA 3V6EA 1F2CA 4AXMA 2E01A 3BWKA 3KSEA 1TL9A 4PI3A 8PCHA 1ICFA 3PT2A 2HH5A 4ZUXU 1ZIVA 3TRKA 2IPPB 3OISA 4BQVA 1UKFA 3KX1A 3GCBA 4A5UA 1YT7A 9PAPA 1JQPA 3BCNA 5CVMA 5CVNB 3MP2A 4MSXA 3RVXA 7PCKA 1QOLA 1ATKA 3M99A 3V6CA 1POPA 3HD3A 1AU0A 3C0RA 1GMYA 3H89A 1NPZA 2IBIA 2FT2A 2JRIA 3K8UA 2AIMA 2FYEA 2HXZA 3H6SA 2G8JA 3IFUA 2FRQA 1PVJA 4HXDB 2OP3A 3KWBX 4BOUA 1DEUA 4K7CA 3S3RA 3RVWA 4P6GA 1YK8A 1EF7A 1NB3A 2DCBA 2H7JA 3KWZA 3HHAA 4P6EA 3TMPA 1CVZA 4IP3A 4REZA 3BOWA 1EWMA 3P5UA 1EWOA 4GUAA 3USVA 4N79A 3O0UA 1M6DA 2FO5A 2FQ9A 4I05A 4YVAA 1SP4B 1CQDA 2J7QC 4BOQA 1F2AA 1BP4A 4MI7A 3PSEA 5CHTA 3CH2X 2FTDA 3CH3X 3MTNA 3H8CA 2YJCA 1MIRA 4M0WA 3H8BA 4XR7A 3BC3A 3I06A 5JH3A 1QDQA 2BTWA 2XU5A 2Y5BA 3MHSA 3B79A 4QRVA 3CBKA 4QBBA 4DMXA 4MZSA 2R9MA 4IUMA 4N8WA 2GFOA 3F5VA 2AGAA 3ERVA 2YJ8A 2AUXA 1STFE 3QSDA 1MDWA 4W5BA 5A24A 3HWNA 3WXGA 1AYVA 5K16A 2B1NA 2VHFA 4BOZA 3IOQA 3NHEA 5CVOB 4XZXA 1MHWA 3QJ3A 4BOSA 4BS5A 1F2BA 4CDEB 2WBFX 1KHPA 2J7QA 2HWKA 2DJGB 1U9QX 4CZWA 2HHNA 2R9FA 2AYOA 2FE8A 2PREA 2R6NA 4RF0A 1NQCA 3O1GA 1IWDA 2XU1A 3IEJA 4ZTBA 1GCBA 5EGWA 1KFXL 4X6HA 2G6DA 4HWYA 1QMYA 4RNAA 5J94A 3K24A 3BPFA 4WA6A 2OULA 4RF1A 2NQGA 1MEMA 2CIOA 2ARYA 1YK7A 3OF9A 5EZSA 2GHUA 2P0RA 2C0YA 2XU3A 2JQFR 1EWLA 5PADA 4Q8HA 3OQCA 1ITOA 2DCDA 3PRMA 2F7DA 2YJ9A 2AS8A 2JQGR 3KFQA 3IHPA 2YJ2A 2B1MA 3QT4A 2AUZA 1MS6A 4CDCB 1CS8A 2E03A 3OF8A 3K9MA 3MJ5A 2PBHA 3PW3A 1PXVA 1THEA 4Q8GA 4WURA 3I3TA 2DC6A 3BB7A 1BQIA 3KKUA 3N3GA 4PP1A 1AIMA 2FUDA 3OVZA 5F02A 1A6RA 1ZCMA 4OELA 4FK5A 5CHVA 1HUCB 4D8BA 3N3KA 4RKXA 2E00A 1FH0A 1AYUA 4QRGA 4P16A 2R9NA 2ACTA 1PADA 4R3DA 5EZQA 4PP2E 4X6JA 3H7DA 1U5IA 3E9SA 6PADA 1Y4HA 4I04A 2Y6EA 3F75A 1PBHA 1U9XA 2DCCA 4X6IA 3MTVA 4YYQA 3PRPA 3IV2A 3CBJA 4D8EA 3U8EA 4BSQA 4YV8A 3PHUA 1PPDA 1GLOA 1AU3A 1TU6A 1K3BB 2ATOA 3W30A 2DC7A 1XKGA 1NB5A 2O6XA 5KO3A 1CV8A 1PIPA 1PPOA 1AECA 2BTWB 4BS6A 2HD5A 4W4UA 2DOSA 1MEGA 3KW9A 2F1GA 3E1ZB 1KHQA 2AU1A 3BPMA 4CDDB 3TNXA 4MM3B 1X9YA 1YZBA 2DZYA 4OW0A 1BGOA 1ME4A 2AYNA 3C9EA 3S3QA 3ZNHA 1KFUL 3WXEA 2VHSA 1SNKA 3W31A 2FRAA 3LXSA 4PT5A 2XU4A 4G54A 4OVZA 1VSNA 1CB5A 4W5CA 4BOPA 2PADA 2DCAA 1ME3A 2NQIA 3P5VA 2YJBA 2Z84A 3B21A 4N4ZA 1S4VA 3BBAA 3DF0A 1F29A 3AI8A 1YVBA 3LFYA 3N4CA 4I07A 2CB5A 3RVVA 1U9WA 4QH6A 2OZ2A 1DF0A 1YALA 3BY4A 1EWPA 2DC8A 2JTCA 3PHXA 4YYVA 5FPWA 1VJVA 4FIPA 2DC9A 4PADA 3HHIA 2BDZA 2NQAA 1Q6KA 3PHWA 4KLBA 3IUTA 1QXPA 3ZUAA 4OEMA 1NLJA 5EF4A 4FJCA 2UZJA 4YYUA 4DMYA 4XUIA 4YYSA 1KXRA 3PNRA 5JZEA 2BDLA 2G8EA 2R9OA 2E02A 1TLOA 2DJFB 4OVZB 3O65A 4YYRA 4D8IA 4YYWA 1PE6A 4QRXA 3WXFA 4BPVA 4MZOA 3P5XA 2R9CA 3MORA
chains in the Genus database with same CATH topology
2BTWB 5E6JA 2J7QC 2DOSA 5EZSA 4BOQA 2BU3A 3RNVA 4MI7A 3PSEA 3OQCA 3PRMA 1DKIA 4MM3B 4M0WA 1YZBA 4OW0A 2BTWA 3ZNHA 3MJ5A 4IUMA 3W31A 2AGAA 4WURA 4PT5A 3BB7A 4OVZA 4BOZA 4BOPA 2Z84A 3B21A 4XZXA 3PT2A 3BBAA 4D8BA 3TRKA 4BOSA 4RKXA 1UKFA 4A5UA 3MP2A 4P16A 2J7QA 4R3DA 2HWKA 5EZQA 3E9SA 3BY4A 3C0RA 2JTCA 2FE8A 3PHXA 2JRIA 3MTVA 4RF0A 4ZTBA 3PHWA 3PRPA 3IFUA 4D8EA 1PVJA 4HXDB 2UZJA 4BOUA 3PHUA 4RNAA 3W30A 3TMPA 5JZEA 4RF1A 4IP3A 4REZA 4OVZB 3O65A 4D8IA 5KO3A 4GUAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C0R A;  3PRM A;  4HXD B;  3ZNH A;  4BOS A;  3PHX A;  4BOU A;  3PHW A;  4BOZ A;  3TMP A;  4BOP A;  4BOQ A;  3PT2 A;  5JZE A;  3PSE A;  3PRP A;  3BY4 A;  3PHU A; 
#chains in the Genus database with same CATH topology
 3MHH A;  5E6J A;  2PNS A;  2P7U A;  3OVX A;  2BU3 A;  3RNV A;  1CPJ A;  3PDF A;  1CTE A;  1PPP A;  1AU2 A;  2NQD B;  1DKI A;  3PBH A;  1CJL A;  1CSB B;  2G7Y A;  1AYW A;  1BY8 A;  1U9V A;  1NL6 A;  1O0E A;  1AU4 A;  2AVW A;  4RY2 A;  3D6S A;  1GEC E;  3IMA A;  1Y08 A;  2DZZ A;  3P5W A;  4CDF B;  5JA7 A;  1PCI A;  2P86 A;  1PPN A;  4AXL A;  3V6E A;  1F2C A;  4AXM A;  2E01 A;  3BWK A;  3KSE A;  1TL9 A;  4PI3 A;  8PCH A;  1ICF A;  3PT2 A;  2HH5 A;  4ZUX U;  1ZIV A;  3TRK A;  2IPP B;  3OIS A;  4BQV A;  1UKF A;  3KX1 A;  3GCB A;  4A5U A;  1YT7 A;  9PAP A;  1JQP A;  3BCN A;  5CVM A;  5CVN B;  3MP2 A;  4MSX A;  3RVX A;  7PCK A;  1QOL A;  1ATK A;  3M99 A;  3V6C A;  1POP A;  3HD3 A;  1AU0 A;  3C0R A;  1GMY A;  3H89 A;  1NPZ A;  2IBI A;  2FT2 A;  2JRI A;  3K8U A;  2AIM A;  2FYE A;  2HXZ A;  3H6S A;  2G8J A;  3IFU A;  2FRQ A;  1PVJ A;  4HXD B;  2OP3 A;  3KWB X;  4BOU A;  1DEU A;  4K7C A;  3S3R A;  3RVW A;  4P6G A;  1YK8 A;  1EF7 A;  1NB3 A;  2DCB A;  2H7J A;  3KWZ A;  3HHA A;  4P6E A;  3TMP A;  1CVZ A;  4IP3 A;  4REZ A;  3BOW A;  1EWM A;  3P5U A;  1EWO A;  4GUA A;  3USV A;  4N79 A;  3O0U A;  1M6D A;  2FO5 A;  2FQ9 A;  4I05 A;  4YVA A;  1SP4 B;  1CQD A;  2J7Q C;  4BOQ A;  1F2A A;  1BP4 A;  4MI7 A;  3PSE A;  5CHT A;  3CH2 X;  2FTD A;  3CH3 X;  3MTN A;  3H8C A;  2YJC A;  1MIR A;  4M0W A;  3H8B A;  4XR7 A;  3BC3 A;  3I06 A;  5JH3 A;  1QDQ A;  2BTW A;  2XU5 A;  2Y5B A;  3MHS A;  3B79 A;  4QRV A;  3CBK A;  4QBB A;  4DMX A;  4MZS A;  2R9M A;  4IUM A;  4N8W A;  2GFO A;  3F5V A;  2AGA A;  3ERV A;  2YJ8 A;  2AUX A;  1STF E;  3QSD A;  1MDW A;  4W5B A;  5A24 A;  3HWN A;  3WXG A;  1AYV A;  5K16 A;  2B1N A;  2VHF A;  4BOZ A;  3IOQ A;  3NHE A;  5CVO B;  4XZX A;  1MHW A;  3QJ3 A;  4BOS A;  4BS5 A;  1F2B A;  4CDE B;  2WBF X;  1KHP A;  2J7Q A;  2HWK A;  2DJG B;  1U9Q X;  4CZW A;  2HHN A;  2R9F A;  2AYO A;  2FE8 A;  2PRE A;  2R6N A;  4RF0 A;  1NQC A;  3O1G A;  1IWD A;  2XU1 A;  3IEJ A;  4ZTB A;  1GCB A;  5EGW A;  1KFX L;  4X6H A;  2G6D A;  4HWY A;  1QMY A;  4RNA A;  5J94 A;  3K24 A;  3BPF A;  4WA6 A;  2OUL A;  4RF1 A;  2NQG A;  1MEM A;  2CIO A;  2ARY A;  1YK7 A;  3OF9 A;  5EZS A;  2GHU A;  2P0R A;  2C0Y A;  2XU3 A;  2JQF R;  1EWL A;  5PAD A;  4Q8H A;  3OQC A;  1ITO A;  2DCD A;  3PRM A;  2F7D A;  2YJ9 A;  2AS8 A;  2JQG R;  3KFQ A;  3IHP A;  2YJ2 A;  2B1M A;  3QT4 A;  2AUZ A;  1MS6 A;  4CDC B;  1CS8 A;  2E03 A;  3OF8 A;  3K9M A;  3MJ5 A;  2PBH A;  3PW3 A;  1PXV A;  1THE A;  4Q8G A;  4WUR A;  3I3T A;  2DC6 A;  3BB7 A;  1BQI A;  3KKU A;  3N3G A;  4PP1 A;  1AIM A;  2FUD A;  3OVZ A;  5F02 A;  1A6R A;  1ZCM A;  4OEL A;  4FK5 A;  5CHV A;  1HUC B;  4D8B A;  3N3K A;  4RKX A;  2E00 A;  1FH0 A;  1AYU A;  4QRG A;  4P16 A;  2R9N A;  2ACT A;  1PAD A;  4R3D A;  5EZQ A;  4PP2 E;  4X6J A;  3H7D A;  1U5I A;  3E9S A;  6PAD A;  1Y4H A;  4I04 A;  2Y6E A;  3F75 A;  1PBH A;  1U9X A;  2DCC A;  4X6I A;  3MTV A;  4YYQ A;  3PRP A;  3IV2 A;  3CBJ A;  4D8E A;  3U8E A;  4BSQ A;  4YV8 A;  3PHU A;  1PPD A;  1GLO A;  1AU3 A;  1TU6 A;  1K3B B;  2ATO A;  3W30 A;  2DC7 A;  1XKG A;  1NB5 A;  2O6X A;  5KO3 A;  1CV8 A;  1PIP A;  1PPO A;  1AEC A;  2BTW B;  4BS6 A;  2HD5 A;  4W4U A;  2DOS A;  1MEG A;  3KW9 A;  2F1G A;  3E1Z B;  1KHQ A;  2AU1 A;  3BPM A;  4CDD B;  3TNX A;  4MM3 B;  1X9Y A;  1YZB A;  2DZY A;  4OW0 A;  1BGO A;  1ME4 A;  2AYN A;  3C9E A;  3S3Q A;  3ZNH A;  1KFU L;  3WXE A;  2VHS A;  1SNK A;  3W31 A;  2FRA A;  3LXS A;  4PT5 A;  2XU4 A;  4G54 A;  4OVZ A;  1VSN A;  1CB5 A;  4W5C A;  4BOP A;  2PAD A;  2DCA A;  1ME3 A;  2NQI A;  3P5V A;  2YJB A;  2Z84 A;  3B21 A;  4N4Z A;  1S4V A;  3BBA A;  3DF0 A;  1F29 A;  3AI8 A;  1YVB A;  3LFY A;  3N4C A;  4I07 A;  2CB5 A;  3RVV A;  1U9W A;  4QH6 A;  2OZ2 A;  1DF0 A;  1YAL A;  3BY4 A;  1EWP A;  2DC8 A;  2JTC A;  3PHX A;  4YYV A;  5FPW A;  1VJV A;  4FIP A;  2DC9 A;  4PAD A;  3HHI A;  2BDZ A;  2NQA A;  1Q6K A;  3PHW A;  4KLB A;  3IUT A;  1QXP A;  3ZUA A;  4OEM A;  1NLJ A;  5EF4 A;  4FJC A;  2UZJ A;  4YYU A;  4DMY A;  4XUI A;  4YYS A;  1KXR A;  3PNR A;  5JZE A;  2BDL A;  2G8E A;  2R9O A;  2E02 A;  1TLO A;  2DJF B;  4OVZ B;  3O65 A;  4YYR A;  4D8I A;  4YYW A;  1PE6 A;  4QRX A;  3WXF A;  4BPV A;  4MZO A;  3P5X A;  2R9C A;  3MOR A; 
#chains in the Genus database with same CATH homology
 2BTW B;  5E6J A;  2J7Q C;  2DOS A;  5EZS A;  4BOQ A;  2BU3 A;  3RNV A;  4MI7 A;  3PSE A;  3OQC A;  3PRM A;  1DKI A;  4MM3 B;  4M0W A;  1YZB A;  4OW0 A;  2BTW A;  3ZNH A;  3MJ5 A;  4IUM A;  3W31 A;  2AGA A;  4WUR A;  4PT5 A;  3BB7 A;  4OVZ A;  4BOZ A;  4BOP A;  2Z84 A;  3B21 A;  4XZX A;  3PT2 A;  3BBA A;  4D8B A;  3TRK A;  4BOS A;  4RKX A;  1UKF A;  4A5U A;  3MP2 A;  4P16 A;  2J7Q A;  4R3D A;  2HWK A;  5EZQ A;  3E9S A;  3BY4 A;  3C0R A;  2JTC A;  2FE8 A;  3PHX A;  2JRI A;  3MTV A;  4RF0 A;  4ZTB A;  3PHW A;  3PRP A;  3IFU A;  4D8E A;  1PVJ A;  4HXD B;  2UZJ A;  4BOU A;  3PHU A;  4RNA A;  3W30 A;  3TMP A;  5JZE A;  4RF1 A;  4IP3 A;  4REZ A;  4OVZ B;  3O65 A;  4D8I A;  5KO3 A;  4GUA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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