The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
171
|
sequence length |
500
|
structure length |
496
|
Chain Sequence |
DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLEDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEIT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Crystal Structure of the Bifunctional Antibiotic Simocyclinone D8, Bound to DNA Gyrase.
pubmed doi rcsb |
| molecule keywords |
DNA GYRASE SUBUNIT A
|
| molecule tags |
Isomerase
|
| source organism |
Escherichia coli
|
| total genus |
171
|
| structure length |
496
|
| sequence length |
500
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
5.99.1.3: Transferred entry: 5.6.2.3. |
| pdb deposition date | 2010-12-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00521 | DNA_topoisoIV | DNA gyrase/topoisomerase IV, subunit A |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Topoisomerase; domain 3 | Topoisomerase, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | Gyrase A; domain 2 | ||
| Alpha Beta | Alpha-Beta Complex | Topoisomerase II; domain 5 | Topoisomerase II, domain 5 |
#chains in the Genus database with same CATH superfamily 1BJT A; 1X75 A; 1WQG A; 4KDD A; 1AB4 A; 1B4B A; 2P5M A; 2Y3P A; 3L4K A; 4G0W A; 2KWA A; 3ORE A; 4G0V A; 4KC6 A; 1ISE A; 3FOE A; 1F9N A; 3LAJ A; 4TMA A; 2XCO A; 4J3N A; 4KB4 A; 5JVO A; 4GFQ A; 1IS1 A; 5CJ9 A; 3LAP A; 4KB2 A; 4ELY A; 2XCR B; 3V4G A; 3OEP A; 4KAW X; 4Z4Q A; 1WQH A; 2XCQ A; 4FM9 A; 3NUH A; 3QX3 A; 2ZFZ A; 1ZVU A; 3L4J A; 1EH1 A; 3FHZ A; 3VA7 A; 4Z53 A; 4CKK A; 1GE9 A; 4ELZ A; 3LPX A; 3CAG A; 3MML B; 1DD5 A; 1EK8 A; 3FOF A; 2PHC B; 4Z3O A; 4CKL A; 4DDQ A; 4G0U A; 2RGR A; 1B4A A; 1XXC A; 3BUE A; 3OPF A; 1XXA A; 1WQF A; 1XXB A; 3ERE D; 1WIH A; 1BGW A; #chains in the Genus database with same CATH topology 3H3V D; 2E2I A; 1WOP A; 2R7Z C; 4P5B A; 2R7Z K; 1O27 A; 3FKI A; 1K83 K; 3GTQ C; 4GFQ A; 2A68 A; 3GTQ K; 4ILD A; 3T02 A; 1WCM A; 2JA5 C; 2JA5 K; 3CQZ C; 1DCP A; 5IOT A; 4A3J C; 3L4J A; 5E68 A; 4C3H C; 3FHZ A; 1X31 C; 3VA7 A; 4A3J K; 1GE9 A; 3S2D C; 4LQY A; 3S2D K; 4XSZ A; 1XZQ A; 4BLB A; 1I6V A; 4AYB D; 2CFA A; 2NVT K; 1AB4 A; 2PMZ D; 1ZXO A; 3H0G A; 4TMA A; 2JA7 A; 1INN A; 3S1M C; 4LLG A; 2A6H A; 4Z4Q A; 5C4J C; 1WQH A; 5C4J K; 1TWF A; 1J6X A; 3T00 A; 2YU9 C; 1JOE A; 2O5J A; 3GTL K; 1UV7 A; 2E2I C; 5IYC K; 2E2I K; 4RMF A; 3GSI A; 1X75 A; 3GTK A; 1VJE A; 2P5M A; 3FKI C; 2NVY A; 3FKI K; 1Y1W A; 4QJV A; 4Y52 C; 1WCM C; 3TFI A; 4Y52 K; 1WCM K; 5IYB C; 5IYB K; 4OIP A; 2ZUE A; 3S2H K; 1XPP A; 1DCH A; 3S15 C; 4QIW L; 3GEH A; 1SFO A; 1J6W A; 1BS2 A; 2ZUF A; 1WQF A; 3S15 K; 1TWA A; 2GSU A; 3H0G C; 2JA7 C; 3H0G K; 2JA7 K; 3L4K A; 1HI9 A; 3ORE A; 4GT9 A; 1ISE A; 1ZBS A; 1YNJ A; 4Q5S A; 2FQO A; 5IOR A; 2O5I A; 4BBS C; 3V4G A; 1O2A A; 1TWF K; 4KAW X; 4BBS K; 5TMF A; 1F93 A; 3A8J A; 3S14 C; 4OIO A; 3S14 K; 4LOW A; 4A3M C; 1EH1 A; 4A3M K; 4WIL A; 3GTP C; 3CAG A; 4A3K C; 4GTL A; 4A3K K; 4Z3O A; 4DDQ A; 4A3F K; 3G4C A; 4KN7 A; 2B63 C; 2NVY C; 3GTK K; 4YFN A; 1Y1W C; 3HOU K; 2B63 K; 2NVY K; 1Y1W K; 5IP7 K; 1WQG A; 1USO A; 3M3Y C; 3M3Y K; 4KC6 A; 3GTM A; 1DCO A; 4KMA A; 2JH3 A; 4MEX A; 3OEP A; 4MEY A; 4M1X A; 1O2B A; 1WOO A; 4JK1 A; 3HKZ L; 2JA6 C; 1SFO C; 4ELZ A; 1SFO K; 4C3J K; 3GTO C; 4CKL A; 4LJZ A; 3GTO K; 3RZO C; 1TWH C; 1XXB A; 1WOS A; 5FLM C; 4LK0 A; 1BJT A; 3GTJ A; 3N0C A; 2E2J K; 3RZD K; 2E2H A; 5HL8 A; 3FOE A; 3WOD A; 2XCO A; 1K83 C; 1O28 A; 5CJ9 A; 4P5A A; 2XCR B; 3K7A C; 3Q3Q A; 4GTE A; 3N0B A; 3SZZ A; 3K7A K; 1PJ7 A; 2PPB A; 1JQW A; 2EBB A; 1ZVU A; 1I3Q C; 2V6T A; 4OIN A; 1I3Q K; 5C44 K; 3IPJ A; 1R9T A; 1USM A; 4A3G C; 1Y1V A; 4A3G K; 2V6U A; 2NVT C; 3GTM K; 1B4B A; 3GTG A; 4XLP A; 2W7V A; 1I6H C; 5JVO A; 1ZYR A; 1RU0 A; 1SMY A; 1I6H K; 4ELY A; 2R92 A; 1EQR A; 3AD7 C; 4YG2 A; 3JST A; 4XLN A; 2NVX A; 4G7O A; 4BY7 C; 4BY7 K; 2NVQ K; 3GTL C; 2PA8 D; 3GTJ K; 5IYC C; 4BLA A; 2E2H C; 3A8K A; 2E2H K; 5C4X K; 4BKW A; 4G0V A; 3BP3 A; 1I50 A; 1TWG A; 5TJ3 A; 3I4N K; 4BBR K; 1VGX A; 1O2F B; 2R93 A; 3S17 C; 3NUH A; 3S17 K; 1R9T K; 5M5Y K; 3A8I A; 4Z53 A; 3S2H C; 1Y1V C; 5C3E C; 1Y1V K; 5C3E K; 3HXA A; 2FQT A; 4YFK A; 1O25 A; 4OIR A; 3GTG C; 3GTG K; 2WAQ L; 3HOY C; 2GSO A; 3HOY K; 3AD9 C; 2R92 C; 2R92 K; 3PO2 C; 3I4M K; 3LAJ A; 3PO2 K; 1IW7 A; 1TWF C; 3AQP A; 3GEI A; 2NVX K; 3QX3 A; 4XCH A; 4A3C K; 3HOX C; 3TFJ A; 3HOX K; 1VRQ C; 4YFX A; 1PJ5 A; 2GAG C; 4A3F C; 4CID A; 1O26 A; 1XXA A; 1WIH A; 3GTK C; 3HOU C; 4GTD A; 5IP7 C; 1I50 C; 3HOW C; 1TWC A; 1TWG C; 1I50 K; 1G51 A; 3T01 A; 3HOW K; 4A3B K; 1TWG K; 4LK1 A; 2R93 C; 4KB4 A; 4G7Z A; 2R93 K; 1L0W A; 1IE0 A; 3BP8 C; 1YX2 A; 4C3I K; 4GTC A; 3AQO A; 2VUM A; 3CQZ A; 5M3M K; 4KM8 A; 4CKK A; 3AH5 A; 4C3J C; 4GZY A; 1TWA C; 4XSX A; 1WSV A; 4WJ4 A; 4PAA A; 1TWA K; 3G4A A; 1PJ6 A; 5D4D A; 1F7U A; 4A3I K; 1XZP B; 2E2J C; 3RZD C; 1IQ0 A; 1F9N A; 2Y0S L; 3HOZ C; 1F7V A; 3HOZ K; 1C0A A; 4FM9 A; 4NOI A; 3DXJ A; 5C44 C; 2WB1 L; 3GIR A; 3S1R C; 4C2M K; 3LPX A; 4LR2 A; 3S1R K; 2YU9 A; 4Y7N C; 1B4A A; 1TWC C; 4Y7N K; 1TWC K; 3S1Q C; 3S1Q K; 2BE5 A; 3GTM C; 4A3D C; 4QIW D; 2D6F C; 1YCL A; 4A3D K; 4GTF A; 2WAQ D; 1IL2 A; 4KMU A; 3LAP A; 4KB2 A; 2VUM C; 3HOV C; 4KN4 A; 1O24 A; 2VUM K; 5L46 A; 3CQZ K; 3HOV K; 1WSR A; 2ZFZ A; 2A69 A; 4C3H K; 4A93 C; 4GTB A; 4A93 K; 4KAR A; 2JA8 C; 2GAH C; 2A6E A; 2NVQ C; 2JA8 K; 3OPF A; 5FJ8 K; 3GTJ C; 5IP9 C; 5IP9 K; 5EGE A; 4ZH4 A; 5C4X C; 4WJ3 M; 1YNN A; 2GSN A; 1BDF A; 3TTG A; 4A3E C; 3GDZ A; 5M5X K; 4A3E K; 3S1M K; 3M4O C; 3I4N C; 1XZQ B; 4BBR C; 3M4O K; 4BY1 C; 2CFA B; 4BY1 K; 3SZY A; 1R9T C; 4BXX C; 1JVI A; 2YU9 K; 4BXX K; 3GTP A; 3H3V L; 1V5V A; 3HKZ D; 5JFE A; 3N3Y A; 2CW0 A; 4P9S A; 4KMH A; 2B63 A; 4G7H A; 1KQ4 A; 3S1N C; 1ZQ1 C; 3I4M C; 3S1N K; 5IOQ A; 3S16 C; 4Q4Z A; 1IS1 A; 3S16 K; 1WOR A; 4KAT A; 3AD8 C; 2NVX C; 2Y0S D; 1HQM A; 5CHP A; 4A3C C; 4QJV B; 1IBA A; 1O29 A; 3EQL A; 4X6A C; 4AYB L; 1DD5 A; 1EK8 A; 4X6A K; 2JA6 A; 3FOF A; 2RGR A; 4C45 A; 2PMZ L; 2WB1 D; 3ERE D; 5EGH A; 3GTO A; 4KMD A; 4A3L C; 1BGW A; 4PAB A; 1TWH A; 4A3L K; 4KDD A; 4OIQ A; 4A3B C; 2P8T A; 1J98 A; 2QPT A; 4O2D A; 2R7Z A; 3ADA C; 1K83 A; 4C3I C; 3GTQ A; 2RH6 A; 2XCQ A; 2PA8 L; 2JA5 A; 4GTA A; 1XZP A; 3GTP K; 2V6S A; 1I3Q A; 5TMC A; 5IYD C; 5M3F K; 2PHC B; 5M5W K; 5IYD K; 1XXC A; 4MQ9 A; 1EFW A; 4A3I C; 2Y3P A; 2KWA A; 4G0W A; 3PO3 C; 4J3N A; 3PO3 K; 1VLO A; 4AH6 A; 1EI6 A; 4FZB A; 1J6V A; 3S0X A; 4KM9 A; 1VH2 A; 3GEE A; 2JA6 K; 4C2M C; 3MML B; 5IOS A; 4G0U A; 3BUE A; 3RZO K; 1TWH K; 5FLM K; 3GTL A; 4KAS A; 3TFH A; #chains in the Genus database with same CATH homology 5EGE A; 2GSO A; 1WQG A; 2GSN A; 2E2I A; 4KC6 A; 4P5B A; 3GTM A; 3LAJ A; 4KMA A; 1O27 A; 3FKI A; 2JH3 A; 4GFQ A; 4ILD A; 3OEP A; 1WCM A; 3AQP A; 2CFA B; 4M1X A; 1O2B A; 5IOT A; 3QX3 A; 3L4J A; 4C3H C; 3FHZ A; 3VA7 A; 1GE9 A; 4ELZ A; 4LQY A; 4CKL A; 3GTP A; 1O26 A; 1XXB A; 1XXA A; 3N3Y A; 1WIH A; 5JFE A; 4BLB A; 4GTD A; 1BJT A; 2CFA A; 4KMH A; 3GTJ A; 1TWC A; 2B63 A; 3N0C A; 1AB4 A; 1KQ4 A; 1ZXO A; 2E2H A; 3FOE A; 3H0G A; 4TMA A; 2XCO A; 4KB4 A; 5IOQ A; 2JA7 A; 1O28 A; 1IS1 A; 5CJ9 A; 4KAT A; 4P5A A; 2XCR B; 3Q3Q A; 4GTE A; 3N0B A; 4Z4Q A; 4GTC A; 1WQH A; 1TWF A; 3AQO A; 5CHP A; 1ZVU A; 2VUM A; 3CQZ A; 4KM8 A; 4CKK A; 1O29 A; 3AH5 A; 1R9T A; 4C3J C; 1DD5 A; 1EK8 A; 2JA6 A; 3FOF A; 2RGR A; 3G4A A; 3ERE D; 1Y1V A; 5EGH A; 3GTO A; 4KMD A; 1BGW A; 1TWH A; 1X75 A; 4KDD A; 3GTK A; 2P5M A; 1B4B A; 2NVY A; 3GTG A; 1Y1W A; 1F9N A; 5JVO A; 4ELY A; 2R92 A; 2R7Z A; 1K83 A; 4C3I C; 3GTQ A; 2RH6 A; 2XCQ A; 4FM9 A; 2JA5 A; 4GTA A; 2NVX A; 3LPX A; 4LR2 A; 1I3Q A; 2PHC B; 2YU9 A; 1B4A A; 1XXC A; 1SFO A; 1WQF A; 1TWA A; 4BLA A; 2GSU A; 4BKW A; 2Y3P A; 3L4K A; 4G0W A; 2KWA A; 3ORE A; 4G0V A; 4GTF A; 1ISE A; 4GT9 A; 1I50 A; 1ZBS A; 4J3N A; 1TWG A; 3LAP A; 4KB2 A; 5TJ3 A; 5IOR A; 3V4G A; 1O2A A; 4KAW X; 2R93 A; 1O24 A; 4FZB A; 3S0X A; 3NUH A; 4KM9 A; 2ZFZ A; 1EH1 A; 4Z53 A; 4GTB A; 4C2M C; 4KAR A; 3CAG A; 3MML B; 5IOS A; 4GTL A; 3OPF A; 4Z3O A; 4DDQ A; 4G0U A; 3BUE A; 3G4C A; 1O25 A; 3GTL A; 4KAS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
